Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS17965 and ABID97_RS17970 overlap by 4 nucleotides ABID97_RS17970 and ABID97_RS17975 are separated by 15 nucleotides ABID97_RS17975 and ABID97_RS17980 are separated by 3 nucleotides ABID97_RS17980 and ABID97_RS17985 are separated by 41 nucleotides
ABID97_RS17965: ABID97_RS17965 - YbgC/FadM family acyl-CoA thioesterase, at 3,712,157 to 3,712,615
_RS17965
ABID97_RS17970: ABID97_RS17970 - protein TolQ, at 3,712,612 to 3,713,334
_RS17970
ABID97_RS17975: ABID97_RS17975 - biopolymer transporter ExbD, at 3,713,350 to 3,713,787
_RS17975
ABID97_RS17980: ABID97_RS17980 - cell envelope integrity protein TolA, at 3,713,791 to 3,714,711
_RS17980
ABID97_RS17985: ABID97_RS17985 - DNA polymerase III subunit alpha, at 3,714,753 to 3,718,271
_RS17985
Position (kb) 3713
3714 Strain fitness (log2 ratio) -2
-1
0
1 at 3712.422 kb on + strand, within ABID97_RS17965 at 3712.562 kb on - strand, within ABID97_RS17965 at 3712.562 kb on - strand, within ABID97_RS17965 at 3712.730 kb on - strand, within ABID97_RS17970 at 3712.883 kb on - strand, within ABID97_RS17970 at 3713.029 kb on + strand, within ABID97_RS17970 at 3713.239 kb on + strand, within ABID97_RS17970 at 3713.239 kb on + strand, within ABID97_RS17970 at 3713.240 kb on - strand, within ABID97_RS17970 at 3713.699 kb on - strand, within ABID97_RS17975 at 3713.785 kb on + strand at 3713.785 kb on + strand at 3713.786 kb on - strand at 3713.786 kb on - strand at 3713.786 kb on - strand at 3713.786 kb on - strand at 3713.786 kb on - strand at 3714.448 kb on + strand, within ABID97_RS17980
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 3,712,422 + ABID97_RS17965 0.58 +0.0 3,712,562 - ABID97_RS17965 0.88 +0.1 3,712,562 - ABID97_RS17965 0.88 -0.1 3,712,730 - ABID97_RS17970 0.16 -0.5 3,712,883 - ABID97_RS17970 0.37 -1.3 3,713,029 + ABID97_RS17970 0.58 -1.2 3,713,239 + ABID97_RS17970 0.87 -1.9 3,713,239 + ABID97_RS17970 0.87 -1.2 3,713,240 - ABID97_RS17970 0.87 -1.2 3,713,699 - ABID97_RS17975 0.80 -0.0 3,713,785 + -0.3 3,713,785 + -0.3 3,713,786 - -1.4 3,713,786 - -1.1 3,713,786 - -0.2 3,713,786 - -1.3 3,713,786 - -0.9 3,714,448 + ABID97_RS17980 0.71 -2.1
Or see this region's nucleotide sequence