Strain Fitness in Variovorax sp. OAS795 around ABID97_RS04485

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS04480 and ABID97_RS04485 are separated by 217 nucleotidesABID97_RS04485 and ABID97_RS04490 are separated by 318 nucleotidesABID97_RS04490 and ABID97_RS04495 are separated by 183 nucleotides ABID97_RS04480: ABID97_RS04480 - magnesium/cobalt transporter CorA, at 928,141 to 929,127 _RS04480 ABID97_RS04485: ABID97_RS04485 - ATP-dependent helicase, at 929,345 to 931,462 _RS04485 ABID97_RS04490: ABID97_RS04490 - ribosome-associated translation inhibitor RaiA, at 931,781 to 932,110 _RS04490 ABID97_RS04495: ABID97_RS04495 - PTS sugar transporter subunit IIA, at 932,294 to 932,761 _RS04495 Position (kb) 929 930 931 932Strain fitness (log2 ratio) -2 -1 0 1 2 3at 928.644 kb on - strand, within ABID97_RS04480at 928.671 kb on - strand, within ABID97_RS04480at 928.925 kb on + strand, within ABID97_RS04480at 928.925 kb on + strand, within ABID97_RS04480at 928.925 kb on + strand, within ABID97_RS04480at 928.926 kb on - strand, within ABID97_RS04480at 928.988 kb on + strand, within ABID97_RS04480at 928.989 kb on - strand, within ABID97_RS04480at 929.282 kb on + strandat 929.282 kb on + strandat 929.327 kb on + strandat 929.327 kb on + strandat 929.328 kb on - strandat 929.328 kb on - strandat 929.328 kb on - strandat 929.742 kb on - strand, within ABID97_RS04485at 929.886 kb on - strand, within ABID97_RS04485at 929.886 kb on - strand, within ABID97_RS04485at 929.990 kb on + strand, within ABID97_RS04485at 930.026 kb on + strand, within ABID97_RS04485at 930.027 kb on - strand, within ABID97_RS04485at 930.045 kb on - strand, within ABID97_RS04485at 930.045 kb on - strand, within ABID97_RS04485at 930.123 kb on - strand, within ABID97_RS04485at 930.218 kb on + strand, within ABID97_RS04485at 930.219 kb on - strand, within ABID97_RS04485at 930.219 kb on - strand, within ABID97_RS04485at 930.240 kb on + strand, within ABID97_RS04485at 930.240 kb on + strand, within ABID97_RS04485at 930.241 kb on - strand, within ABID97_RS04485at 930.241 kb on - strand, within ABID97_RS04485at 930.244 kb on + strand, within ABID97_RS04485at 930.245 kb on - strand, within ABID97_RS04485at 930.245 kb on - strand, within ABID97_RS04485at 930.309 kb on - strand, within ABID97_RS04485at 930.590 kb on + strand, within ABID97_RS04485at 930.590 kb on + strand, within ABID97_RS04485at 930.837 kb on - strand, within ABID97_RS04485at 930.899 kb on + strand, within ABID97_RS04485at 930.900 kb on - strand, within ABID97_RS04485at 930.923 kb on + strand, within ABID97_RS04485at 930.924 kb on - strand, within ABID97_RS04485at 931.080 kb on - strand, within ABID97_RS04485at 931.080 kb on - strand, within ABID97_RS04485at 931.080 kb on - strand, within ABID97_RS04485at 931.217 kb on + strand, within ABID97_RS04485at 931.217 kb on + strand, within ABID97_RS04485at 931.217 kb on + strand, within ABID97_RS04485at 931.217 kb on + strand, within ABID97_RS04485at 931.218 kb on - strand, within ABID97_RS04485at 931.218 kb on - strand, within ABID97_RS04485at 931.274 kb on + strandat 931.274 kb on + strandat 931.274 kb on + strandat 931.274 kb on + strandat 931.274 kb on + strandat 931.275 kb on - strandat 931.275 kb on - strandat 931.275 kb on - strandat 931.313 kb on + strandat 931.314 kb on - strandat 931.563 kb on + strandat 931.563 kb on + strandat 931.564 kb on - strandat 931.564 kb on - strandat 931.575 kb on - strandat 931.653 kb on + strandat 931.653 kb on + strandat 931.653 kb on + strandat 931.654 kb on - strandat 931.835 kb on + strand, within ABID97_RS04490at 931.836 kb on - strand, within ABID97_RS04490at 931.836 kb on - strand, within ABID97_RS04490at 932.006 kb on + strand, within ABID97_RS04490at 932.006 kb on + strand, within ABID97_RS04490at 932.006 kb on + strand, within ABID97_RS04490at 932.006 kb on + strand, within ABID97_RS04490at 932.006 kb on + strand, within ABID97_RS04490at 932.007 kb on - strand, within ABID97_RS04490at 932.007 kb on - strand, within ABID97_RS04490at 932.108 kb on + strandat 932.108 kb on + strandat 932.109 kb on - strandat 932.109 kb on - strandat 932.109 kb on - strandat 932.109 kb on - strandat 932.109 kb on - strandat 932.109 kb on - strandat 932.109 kb on - strandat 932.233 kb on + strandat 932.270 kb on + strandat 932.270 kb on + strandat 932.270 kb on + strandat 932.271 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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928,644 - ABID97_RS04480 0.51 -2.4
928,671 - ABID97_RS04480 0.54 -2.0
928,925 + ABID97_RS04480 0.79 -0.6
928,925 + ABID97_RS04480 0.79 +0.1
928,925 + ABID97_RS04480 0.79 -0.4
928,926 - ABID97_RS04480 0.80 +1.0
928,988 + ABID97_RS04480 0.86 +3.0
928,989 - ABID97_RS04480 0.86 -1.0
929,282 + -0.3
929,282 + -0.7
929,327 + +0.5
929,327 + +0.6
929,328 - -0.0
929,328 - +0.3
929,328 - -0.6
929,742 - ABID97_RS04485 0.19 -0.0
929,886 - ABID97_RS04485 0.26 +0.7
929,886 - ABID97_RS04485 0.26 -0.0
929,990 + ABID97_RS04485 0.30 -0.5
930,026 + ABID97_RS04485 0.32 +1.4
930,027 - ABID97_RS04485 0.32 +1.0
930,045 - ABID97_RS04485 0.33 -0.8
930,045 - ABID97_RS04485 0.33 +0.6
930,123 - ABID97_RS04485 0.37 -0.4
930,218 + ABID97_RS04485 0.41 +0.7
930,219 - ABID97_RS04485 0.41 -0.2
930,219 - ABID97_RS04485 0.41 +0.1
930,240 + ABID97_RS04485 0.42 -0.4
930,240 + ABID97_RS04485 0.42 +0.3
930,241 - ABID97_RS04485 0.42 -0.6
930,241 - ABID97_RS04485 0.42 -0.5
930,244 + ABID97_RS04485 0.42 -0.2
930,245 - ABID97_RS04485 0.42 -1.0
930,245 - ABID97_RS04485 0.42 -1.0
930,309 - ABID97_RS04485 0.46 -0.4
930,590 + ABID97_RS04485 0.59 -0.3
930,590 + ABID97_RS04485 0.59 +0.1
930,837 - ABID97_RS04485 0.70 -0.1
930,899 + ABID97_RS04485 0.73 -1.0
930,900 - ABID97_RS04485 0.73 -0.3
930,923 + ABID97_RS04485 0.75 -0.3
930,924 - ABID97_RS04485 0.75 -0.5
931,080 - ABID97_RS04485 0.82 -0.1
931,080 - ABID97_RS04485 0.82 -0.3
931,080 - ABID97_RS04485 0.82 +0.2
931,217 + ABID97_RS04485 0.88 +1.5
931,217 + ABID97_RS04485 0.88 -0.2
931,217 + ABID97_RS04485 0.88 +0.3
931,217 + ABID97_RS04485 0.88 +1.3
931,218 - ABID97_RS04485 0.88 +0.1
931,218 - ABID97_RS04485 0.88 -0.3
931,274 + +0.0
931,274 + +0.0
931,274 + -0.0
931,274 + +0.9
931,274 + -0.2
931,275 - -0.9
931,275 - -0.1
931,275 - -0.2
931,313 + +0.1
931,314 - -0.0
931,563 + +0.0
931,563 + -0.8
931,564 - -0.3
931,564 - +0.0
931,575 - +0.4
931,653 + +0.6
931,653 + +0.1
931,653 + +0.7
931,654 - +0.5
931,835 + ABID97_RS04490 0.16 -0.1
931,836 - ABID97_RS04490 0.17 -0.2
931,836 - ABID97_RS04490 0.17 +0.1
932,006 + ABID97_RS04490 0.68 +0.0
932,006 + ABID97_RS04490 0.68 -1.0
932,006 + ABID97_RS04490 0.68 +0.1
932,006 + ABID97_RS04490 0.68 +0.2
932,006 + ABID97_RS04490 0.68 -0.5
932,007 - ABID97_RS04490 0.68 -0.4
932,007 - ABID97_RS04490 0.68 -2.2
932,108 + +0.1
932,108 + +0.6
932,109 - -0.2
932,109 - -0.5
932,109 - +0.4
932,109 - +0.1
932,109 - -0.3
932,109 - +0.8
932,109 - -0.0
932,233 + +2.0
932,270 + -1.1
932,270 + +0.6
932,270 + +0.4
932,271 - -0.0

Or see this region's nucleotide sequence