Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02290

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02280 and ABID97_RS02285 are separated by 67 nucleotidesABID97_RS02285 and ABID97_RS02290 are separated by 37 nucleotidesABID97_RS02290 and ABID97_RS02295 are separated by 15 nucleotidesABID97_RS02295 and ABID97_RS02300 are separated by 8 nucleotides ABID97_RS02280: ABID97_RS02280 - helix-turn-helix domain-containing protein, at 460,266 to 460,751 _RS02280 ABID97_RS02285: ABID97_RS02285 - response regulator transcription factor, at 460,819 to 461,493 _RS02285 ABID97_RS02290: ABID97_RS02290 - sensor histidine kinase N-terminal domain-containing protein, at 461,531 to 462,976 _RS02290 ABID97_RS02295: ABID97_RS02295 - sporulation protein, at 462,992 to 463,198 _RS02295 ABID97_RS02300: ABID97_RS02300 - biotin--[acetyl-CoA-carboxylase] ligase, at 463,207 to 464,028 _RS02300 Position (kb) 461 462 463Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 460.718 kb on - strandat 460.737 kb on + strandat 460.737 kb on + strandat 460.738 kb on - strandat 460.738 kb on - strandat 460.738 kb on - strandat 460.738 kb on - strandat 460.738 kb on - strandat 460.738 kb on - strandat 460.738 kb on - strandat 460.738 kb on - strandat 460.738 kb on - strandat 460.739 kb on + strandat 460.739 kb on + strandat 460.739 kb on + strandat 460.739 kb on + strandat 460.739 kb on + strandat 460.739 kb on + strandat 460.740 kb on - strandat 460.740 kb on - strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 461.006 kb on + strand, within ABID97_RS02285at 461.007 kb on - strand, within ABID97_RS02285at 461.007 kb on - strand, within ABID97_RS02285at 461.007 kb on - strand, within ABID97_RS02285at 461.007 kb on - strand, within ABID97_RS02285at 461.007 kb on - strand, within ABID97_RS02285at 461.113 kb on + strand, within ABID97_RS02285at 461.113 kb on + strand, within ABID97_RS02285at 461.113 kb on + strand, within ABID97_RS02285at 461.113 kb on + strand, within ABID97_RS02285at 461.113 kb on + strand, within ABID97_RS02285at 461.113 kb on + strand, within ABID97_RS02285at 461.114 kb on - strand, within ABID97_RS02285at 461.114 kb on - strand, within ABID97_RS02285at 461.114 kb on - strand, within ABID97_RS02285at 461.114 kb on - strand, within ABID97_RS02285at 461.114 kb on - strand, within ABID97_RS02285at 461.114 kb on - strand, within ABID97_RS02285at 461.221 kb on + strand, within ABID97_RS02285at 461.222 kb on - strand, within ABID97_RS02285at 461.222 kb on - strand, within ABID97_RS02285at 461.398 kb on + strand, within ABID97_RS02285at 461.398 kb on + strand, within ABID97_RS02285at 461.398 kb on + strand, within ABID97_RS02285at 461.398 kb on + strand, within ABID97_RS02285at 461.398 kb on + strand, within ABID97_RS02285at 461.398 kb on + strand, within ABID97_RS02285at 461.398 kb on + strand, within ABID97_RS02285at 461.399 kb on - strand, within ABID97_RS02285at 461.399 kb on - strand, within ABID97_RS02285at 461.399 kb on - strand, within ABID97_RS02285at 461.399 kb on - strand, within ABID97_RS02285at 461.399 kb on - strand, within ABID97_RS02285at 461.399 kb on - strand, within ABID97_RS02285at 461.468 kb on - strandat 461.684 kb on + strand, within ABID97_RS02290at 461.684 kb on + strand, within ABID97_RS02290at 461.685 kb on - strand, within ABID97_RS02290at 461.795 kb on + strand, within ABID97_RS02290at 461.795 kb on + strand, within ABID97_RS02290at 461.795 kb on + strand, within ABID97_RS02290at 461.795 kb on + strand, within ABID97_RS02290at 461.795 kb on + strand, within ABID97_RS02290at 461.795 kb on + strand, within ABID97_RS02290at 461.795 kb on + strand, within ABID97_RS02290at 461.796 kb on - strand, within ABID97_RS02290at 461.798 kb on + strand, within ABID97_RS02290at 461.798 kb on + strand, within ABID97_RS02290at 461.798 kb on + strand, within ABID97_RS02290at 461.798 kb on + strand, within ABID97_RS02290at 461.799 kb on - strand, within ABID97_RS02290at 461.799 kb on - strand, within ABID97_RS02290at 461.799 kb on - strand, within ABID97_RS02290at 461.799 kb on - strand, within ABID97_RS02290at 462.563 kb on + strand, within ABID97_RS02290at 462.662 kb on + strand, within ABID97_RS02290at 462.662 kb on + strand, within ABID97_RS02290at 462.662 kb on + strand, within ABID97_RS02290at 462.663 kb on - strand, within ABID97_RS02290at 462.663 kb on - strand, within ABID97_RS02290at 462.663 kb on - strand, within ABID97_RS02290at 462.806 kb on + strand, within ABID97_RS02290at 462.806 kb on + strand, within ABID97_RS02290at 462.807 kb on - strand, within ABID97_RS02290at 462.807 kb on - strand, within ABID97_RS02290at 462.807 kb on - strand, within ABID97_RS02290at 463.150 kb on - strand, within ABID97_RS02295

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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460,718 - +0.0
460,737 + +0.7
460,737 + +0.2
460,738 - +0.9
460,738 - +0.2
460,738 - +0.4
460,738 - -0.4
460,738 - +0.4
460,738 - +0.3
460,738 - -0.0
460,738 - +0.6
460,738 - -0.3
460,739 + -0.3
460,739 + -0.1
460,739 + +0.2
460,739 + +0.9
460,739 + +0.0
460,739 + +0.1
460,740 - -0.7
460,740 - -0.8
460,769 + -0.1
460,769 + -0.3
460,769 + -0.2
460,769 + -0.8
460,769 + -0.3
460,769 + -0.1
460,769 + +0.1
460,769 + +0.3
460,769 + -0.3
460,769 + -0.3
460,769 + +0.2
460,769 + -0.0
460,769 + -0.3
460,769 + -0.3
460,769 + -1.1
460,769 + -0.2
460,770 - -3.3
460,770 - -5.1
460,770 - -3.4
460,770 - -3.6
460,770 - +0.4
460,770 - -3.1
460,770 - -3.1
460,770 - -3.8
460,770 - -4.7
460,770 - +1.0
460,770 - -1.6
460,770 - -3.7
460,770 - -3.4
460,770 - -2.8
460,770 - -2.9
460,770 - -4.1
460,770 - -5.2
460,770 - -2.5
460,770 - -3.3
460,770 - -4.7
461,006 + ABID97_RS02285 0.28 -3.5
461,007 - ABID97_RS02285 0.28 -4.0
461,007 - ABID97_RS02285 0.28 -4.7
461,007 - ABID97_RS02285 0.28 -2.4
461,007 - ABID97_RS02285 0.28 -0.3
461,007 - ABID97_RS02285 0.28 -4.0
461,113 + ABID97_RS02285 0.44 -4.5
461,113 + ABID97_RS02285 0.44 -4.7
461,113 + ABID97_RS02285 0.44 -4.9
461,113 + ABID97_RS02285 0.44 -6.7
461,113 + ABID97_RS02285 0.44 -5.5
461,113 + ABID97_RS02285 0.44 -3.3
461,114 - ABID97_RS02285 0.44 -3.3
461,114 - ABID97_RS02285 0.44 -3.6
461,114 - ABID97_RS02285 0.44 -2.9
461,114 - ABID97_RS02285 0.44 -3.3
461,114 - ABID97_RS02285 0.44 -4.2
461,114 - ABID97_RS02285 0.44 -5.1
461,221 + ABID97_RS02285 0.60 -3.5
461,222 - ABID97_RS02285 0.60 -3.8
461,222 - ABID97_RS02285 0.60 -4.1
461,398 + ABID97_RS02285 0.86 -4.2
461,398 + ABID97_RS02285 0.86 -4.8
461,398 + ABID97_RS02285 0.86 -4.2
461,398 + ABID97_RS02285 0.86 -4.2
461,398 + ABID97_RS02285 0.86 -3.1
461,398 + ABID97_RS02285 0.86 -3.8
461,398 + ABID97_RS02285 0.86 -4.2
461,399 - ABID97_RS02285 0.86 -3.1
461,399 - ABID97_RS02285 0.86 +0.4
461,399 - ABID97_RS02285 0.86 -2.8
461,399 - ABID97_RS02285 0.86 -4.5
461,399 - ABID97_RS02285 0.86 -3.8
461,399 - ABID97_RS02285 0.86 -5.4
461,468 - -2.1
461,684 + ABID97_RS02290 0.11 -4.3
461,684 + ABID97_RS02290 0.11 -5.5
461,685 - ABID97_RS02290 0.11 -4.1
461,795 + ABID97_RS02290 0.18 -4.0
461,795 + ABID97_RS02290 0.18 -1.0
461,795 + ABID97_RS02290 0.18 -2.8
461,795 + ABID97_RS02290 0.18 -3.5
461,795 + ABID97_RS02290 0.18 -3.6
461,795 + ABID97_RS02290 0.18 -4.9
461,795 + ABID97_RS02290 0.18 -3.9
461,796 - ABID97_RS02290 0.18 -3.9
461,798 + ABID97_RS02290 0.18 -3.5
461,798 + ABID97_RS02290 0.18 -3.1
461,798 + ABID97_RS02290 0.18 -4.5
461,798 + ABID97_RS02290 0.18 -0.6
461,799 - ABID97_RS02290 0.19 -3.3
461,799 - ABID97_RS02290 0.19 -5.0
461,799 - ABID97_RS02290 0.19 -1.1
461,799 - ABID97_RS02290 0.19 -4.8
462,563 + ABID97_RS02290 0.71 -4.4
462,662 + ABID97_RS02290 0.78 -5.4
462,662 + ABID97_RS02290 0.78 -4.1
462,662 + ABID97_RS02290 0.78 -2.6
462,663 - ABID97_RS02290 0.78 -1.4
462,663 - ABID97_RS02290 0.78 -3.8
462,663 - ABID97_RS02290 0.78 -4.5
462,806 + ABID97_RS02290 0.88 -5.1
462,806 + ABID97_RS02290 0.88 -4.8
462,807 - ABID97_RS02290 0.88 -2.9
462,807 - ABID97_RS02290 0.88 -3.7
462,807 - ABID97_RS02290 0.88 -1.1
463,150 - ABID97_RS02295 0.76 +0.5

Or see this region's nucleotide sequence