Strain Fitness in Escherichia coli BW25113 around b3355

Experiment: D-Ribose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Ribose (C)
3,481,574	+	yheT	b3353	0.34	+0.4
3,481,574	-	yheT	b3353	0.34	-1.1
3,481,574	-	yheT	b3353	0.34	+0.1
3,481,578	+	yheT	b3353	0.35	-0.6
3,481,613	+	yheT	b3353	0.38	+0.2
3,481,613	+	yheT	b3353	0.38	-0.5
3,481,690	+	yheT	b3353	0.46	-0.5
3,481,690	+	yheT	b3353	0.46	-0.2
3,481,695	-	yheT	b3353	0.46	-0.3
3,481,764	-	yheT	b3353	0.53	+0.1
3,481,827	+	yheT	b3353	0.59	-0.3
3,481,865	+	yheT	b3353	0.63	+0.8
3,481,865	+	yheT	b3353	0.63	+0.2
3,481,970	+	yheT	b3353	0.73	+1.0
3,481,990	+	yheT	b3353	0.75	+0.5
3,481,990	+	yheT	b3353	0.75	-1.1
3,481,997	+	yheT	b3353	0.76	-0.5
3,481,997	+	yheT	b3353	0.76	+0.6
3,481,997	+	yheT	b3353	0.76	+0.3
3,481,997	+	yheT	b3353	0.76	+0.4
3,481,997	+	yheT	b3353	0.76	+0.9
3,482,005	-	yheT	b3353	0.76	-0.3
3,482,005	-	yheT	b3353	0.76	+0.7
3,482,005	-	yheT	b3353	0.76	+0.8
3,482,005	-	yheT	b3353	0.76	-1.0
3,482,017	-	yheT	b3353	0.78	-0.6
3,482,017	-	yheT	b3353	0.78	-0.8
3,482,021	-	yheT	b3353	0.78	+0.4
3,482,021	-	yheT	b3353	0.78	-1.2
3,482,041	+	yheT	b3353	0.80	+0.8
3,482,051	+	yheT	b3353	0.81	+0.4
3,482,051	+	yheT	b3353	0.81	-1.8
3,482,051	+	yheT	b3353	0.81	+1.3
3,482,109	-	yheT	b3353	0.87	+0.3
3,482,109	-	yheT	b3353	0.87	+2.0
3,482,127	-	yheT	b3353	0.88	-0.1
3,482,151	-				-1.2
3,482,181	+				-0.7
3,482,196	-				+0.2
3,482,196	-				+0.2
3,482,210	-				-0.1
3,482,210	-				-0.2
3,482,211	-				-0.4
3,482,253	-				-0.4
3,482,263	-	yheU	b3354	0.11	-0.2
3,482,380	+	yheU	b3354	0.64	+0.1
3,482,380	-	yheU	b3354	0.64	-1.8
3,482,388	-	yheU	b3354	0.68	-1.7
3,482,388	-	yheU	b3354	0.68	-2.2
3,482,398	+	yheU	b3354	0.72	-1.2
3,482,401	-	yheU	b3354	0.74	-2.4
3,482,408	+	yheU	b3354	0.77	-1.2
3,482,411	-	yheU	b3354	0.78	-0.5
3,482,411	-	yheU	b3354	0.78	-1.1
3,482,411	-	yheU	b3354	0.78	-1.1
3,482,416	-	yheU	b3354	0.80	-1.5
3,482,422	+	yheU	b3354	0.83	+0.1
3,482,466	-				-1.9
3,482,611	-	prkB	b3355	0.11	-2.5
3,482,626	-	prkB	b3355	0.13	-1.3
3,482,629	-	prkB	b3355	0.13	-1.9
3,482,646	+	prkB	b3355	0.15	-3.8
3,482,654	-	prkB	b3355	0.16	-1.4
3,482,654	-	prkB	b3355	0.16	-3.4
3,482,654	-	prkB	b3355	0.16	-2.7
3,482,770	+	prkB	b3355	0.30	-2.6
3,482,775	+	prkB	b3355	0.30	-2.5
3,482,783	-	prkB	b3355	0.31	-2.2
3,482,783	-	prkB	b3355	0.31	-1.3
3,482,853	-	prkB	b3355	0.39	-1.8
3,482,853	-	prkB	b3355	0.39	-1.4
3,482,890	-	prkB	b3355	0.43	-1.7
3,482,890	-	prkB	b3355	0.43	-1.7
3,482,897	+	prkB	b3355	0.44	-2.4
3,482,902	+	prkB	b3355	0.45	-1.8
3,482,902	+	prkB	b3355	0.45	-4.1
3,482,922	-	prkB	b3355	0.47	-1.4
3,482,922	-	prkB	b3355	0.47	-1.7
3,482,923	+	prkB	b3355	0.47	-3.1
3,482,931	+	prkB	b3355	0.48	-1.2
3,482,931	+	prkB	b3355	0.48	-2.6
3,482,939	-	prkB	b3355	0.49	-2.3
3,482,939	-	prkB	b3355	0.49	-3.6
3,482,947	+	prkB	b3355	0.50	-2.8
3,482,947	+	prkB	b3355	0.50	-0.9
3,482,974	-	prkB	b3355	0.53	-0.9
3,482,977	+	prkB	b3355	0.53	-3.7
3,482,979	-	prkB	b3355	0.54	-2.9
3,482,979	-	prkB	b3355	0.54	-4.3
3,482,992	-	prkB	b3355	0.55	-1.4
3,482,992	-	prkB	b3355	0.55	-1.9
3,483,033	+	prkB	b3355	0.60	-3.8
3,483,046	+	prkB	b3355	0.61	-1.4
3,483,053	+	prkB	b3355	0.62	-1.6
3,483,061	-	prkB	b3355	0.63	-3.3
3,483,061	-	prkB	b3355	0.63	-3.6
3,483,066	-	prkB	b3355	0.64	-0.9
3,483,068	+	prkB	b3355	0.64	-2.4
3,483,095	-	prkB	b3355	0.67	-1.6
3,483,142	-	prkB	b3355	0.72	-1.5
3,483,203	-	prkB	b3355	0.79	-3.0
3,483,218	+	prkB	b3355	0.81	-2.1
3,483,226	-	prkB	b3355	0.82	-2.0
3,483,237	+	prkB	b3355	0.83	-1.9
3,483,237	+	prkB	b3355	0.83	-1.1
3,483,242	+	prkB	b3355	0.84	-1.4
3,483,242	+	prkB	b3355	0.84	-2.4
3,483,256	+	prkB	b3355	0.86	-1.6
3,483,286	+	prkB	b3355	0.89	-2.3
3,483,337	-				-2.9
3,483,337	-				-0.7
3,483,452	+				+1.3
3,483,452	+				+0.3
3,483,452	+				-1.5
3,483,454	+				+0.7
3,483,454	+				+0.2
3,483,458	-				-0.7
3,483,462	+				+0.3
3,483,472	-				-0.2
3,483,472	-				-0.3
3,483,488	+	yhfA	b3356	0.13	+0.7
3,483,528	-	yhfA	b3356	0.23	-1.2
3,483,685	-	yhfA	b3356	0.61	+1.3
3,483,722	+	yhfA	b3356	0.71	-0.9
3,483,741	+	yhfA	b3356	0.75	+0.4
3,483,763	-	yhfA	b3356	0.81	-0.7
3,483,763	-	yhfA	b3356	0.81	+0.5
3,483,780	+	yhfA	b3356	0.85	-0.0
3,483,856	-				-0.2
3,483,944	-				-0.5
3,483,944	-				-0.9
3,483,962	+				-0.1
3,483,970	+				+0.5
3,483,982	-				-0.1
3,484,008	+				+0.7
3,484,008	+				-0.1
3,484,015	+				+0.1
3,484,030	+				-0.6
3,484,035	+				+0.3
3,484,060	-				-1.7
3,484,069	+				-0.4
3,484,083	+				-0.8
3,484,118	+				+1.2