Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glcC and yghO are separated by 6 nucleotides yghO and insH-9 are separated by 34 nucleotides
b2980: glcC - DNA-binding transcriptional dual regulator, glycolate-binding (NCBI), at 3,126,294 to 3,127,058
glcC
b2981: yghO - predicted DNA-binding transcriptional regulator (RefSeq), at 3,127,065 to 3,128,165
yghO
b2982: insH-9 - IS5 transposase and trans-activator (NCBI), at 3,128,200 to 3,129,216
insH-9
Position (kb)
3127
3128
3129 Strain fitness (log2 ratio)
-1
0
1 at 3126.066 kb on - strand at 3126.280 kb on - strand at 3126.282 kb on - strand at 3126.282 kb on - strand at 3126.345 kb on - strand at 3126.396 kb on - strand, within glcC at 3126.427 kb on + strand, within glcC at 3126.510 kb on + strand, within glcC at 3126.598 kb on + strand, within glcC at 3126.626 kb on + strand, within glcC at 3126.740 kb on - strand, within glcC at 3126.753 kb on - strand, within glcC at 3126.865 kb on - strand, within glcC at 3126.889 kb on + strand, within glcC at 3126.926 kb on - strand, within glcC at 3127.086 kb on - strand at 3127.101 kb on - strand at 3127.148 kb on - strand at 3127.169 kb on - strand at 3127.169 kb on - strand at 3127.234 kb on - strand, within yghO at 3127.274 kb on - strand, within yghO at 3127.274 kb on - strand, within yghO at 3127.435 kb on + strand, within yghO at 3127.566 kb on + strand, within yghO at 3127.566 kb on + strand, within yghO at 3127.607 kb on + strand, within yghO at 3127.697 kb on - strand, within yghO at 3127.762 kb on - strand, within yghO at 3127.762 kb on - strand, within yghO at 3127.762 kb on - strand, within yghO at 3127.764 kb on + strand, within yghO at 3127.772 kb on - strand, within yghO at 3127.846 kb on - strand, within yghO at 3127.909 kb on - strand, within yghO at 3127.909 kb on - strand, within yghO at 3127.966 kb on + strand, within yghO at 3128.034 kb on + strand, within yghO at 3128.034 kb on + strand, within yghO at 3128.034 kb on + strand, within yghO
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 3,126,066 - -0.0 3,126,280 - -0.1 3,126,282 - -0.6 3,126,282 - +0.2 3,126,345 - -0.9 3,126,396 - glcC b2980 0.13 -0.2 3,126,427 + glcC b2980 0.17 -0.6 3,126,510 + glcC b2980 0.28 -0.0 3,126,598 + glcC b2980 0.40 +0.5 3,126,626 + glcC b2980 0.43 -0.8 3,126,740 - glcC b2980 0.58 +0.0 3,126,753 - glcC b2980 0.60 +0.3 3,126,865 - glcC b2980 0.75 -1.0 3,126,889 + glcC b2980 0.78 +0.6 3,126,926 - glcC b2980 0.83 +0.2 3,127,086 - +0.1 3,127,101 - +0.2 3,127,148 - -0.5 3,127,169 - +1.0 3,127,169 - +0.6 3,127,234 - yghO b2981 0.15 -0.5 3,127,274 - yghO b2981 0.19 -1.5 3,127,274 - yghO b2981 0.19 +0.2 3,127,435 + yghO b2981 0.34 +0.1 3,127,566 + yghO b2981 0.46 -0.9 3,127,566 + yghO b2981 0.46 -0.3 3,127,607 + yghO b2981 0.49 +0.3 3,127,697 - yghO b2981 0.57 -0.3 3,127,762 - yghO b2981 0.63 +0.7 3,127,762 - yghO b2981 0.63 -1.7 3,127,762 - yghO b2981 0.63 -0.5 3,127,764 + yghO b2981 0.63 +0.1 3,127,772 - yghO b2981 0.64 -0.4 3,127,846 - yghO b2981 0.71 -0.4 3,127,909 - yghO b2981 0.77 -0.7 3,127,909 - yghO b2981 0.77 -0.1 3,127,966 + yghO b2981 0.82 -0.4 3,128,034 + yghO b2981 0.88 -0.2 3,128,034 + yghO b2981 0.88 -0.1 3,128,034 + yghO b2981 0.88 +0.1
Or see this region's nucleotide sequence