Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_665

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_664 and PfGW456L13_665 are separated by 50 nucleotidesPfGW456L13_665 and PfGW456L13_666 are separated by 39 nucleotides PfGW456L13_664 - DNA recombination and repair protein RecF, at 754,915 to 755,988 _664 PfGW456L13_665 - DNA polymerase III beta subunit (EC 2.7.7.7), at 756,039 to 757,142 _665 PfGW456L13_666 - Chromosomal replication initiator protein DnaA, at 757,182 to 758,696 _666 Position (kb) 756 757 758Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 755.045 kb on - strand, within PfGW456L13_664at 755.118 kb on - strand, within PfGW456L13_664at 755.118 kb on - strand, within PfGW456L13_664at 755.122 kb on - strand, within PfGW456L13_664at 755.122 kb on - strand, within PfGW456L13_664at 755.122 kb on - strand, within PfGW456L13_664at 755.122 kb on - strand, within PfGW456L13_664at 755.122 kb on - strand, within PfGW456L13_664at 755.122 kb on - strand, within PfGW456L13_664at 755.122 kb on - strand, within PfGW456L13_664at 755.122 kb on - strand, within PfGW456L13_664at 755.171 kb on - strand, within PfGW456L13_664at 755.275 kb on - strand, within PfGW456L13_664at 755.355 kb on - strand, within PfGW456L13_664at 755.355 kb on - strand, within PfGW456L13_664at 755.355 kb on - strand, within PfGW456L13_664at 755.428 kb on - strand, within PfGW456L13_664at 755.428 kb on - strand, within PfGW456L13_664at 755.430 kb on - strand, within PfGW456L13_664at 755.430 kb on - strand, within PfGW456L13_664at 755.430 kb on - strand, within PfGW456L13_664at 755.430 kb on - strand, within PfGW456L13_664at 755.430 kb on - strand, within PfGW456L13_664at 755.430 kb on - strand, within PfGW456L13_664at 755.430 kb on - strand, within PfGW456L13_664at 755.430 kb on - strand, within PfGW456L13_664at 755.430 kb on - strand, within PfGW456L13_664at 755.512 kb on - strand, within PfGW456L13_664at 755.763 kb on + strand, within PfGW456L13_664at 755.763 kb on + strand, within PfGW456L13_664at 755.764 kb on - strand, within PfGW456L13_664at 755.764 kb on - strand, within PfGW456L13_664at 755.775 kb on + strand, within PfGW456L13_664at 755.775 kb on + strand, within PfGW456L13_664at 755.776 kb on - strand, within PfGW456L13_664at 755.809 kb on + strand, within PfGW456L13_664at 755.809 kb on + strand, within PfGW456L13_664at 755.809 kb on + strand, within PfGW456L13_664at 755.810 kb on - strand, within PfGW456L13_664at 755.815 kb on - strand, within PfGW456L13_664at 755.832 kb on - strand, within PfGW456L13_664at 755.933 kb on + strandat 755.940 kb on + strandat 755.940 kb on + strandat 755.940 kb on + strandat 755.940 kb on + strandat 755.941 kb on - strandat 755.941 kb on - strandat 756.010 kb on + strandat 756.010 kb on + strandat 756.010 kb on + strandat 756.010 kb on + strandat 756.010 kb on + strandat 756.010 kb on + strandat 756.011 kb on - strandat 756.011 kb on - strandat 756.011 kb on - strandat 756.011 kb on - strandat 756.020 kb on + strandat 756.020 kb on + strandat 756.020 kb on + strandat 756.020 kb on + strandat 756.021 kb on - strandat 756.021 kb on - strandat 756.021 kb on - strandat 756.021 kb on - strandat 756.021 kb on - strandat 756.021 kb on - strandat 756.021 kb on - strandat 756.040 kb on + strandat 756.040 kb on + strandat 756.041 kb on - strandat 757.161 kb on - strandat 757.165 kb on - strandat 757.165 kb on - strandat 757.165 kb on - strandat 757.165 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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755,045 - PfGW456L13_664 0.12 -1.3
755,118 - PfGW456L13_664 0.19 -0.7
755,118 - PfGW456L13_664 0.19 -0.8
755,122 - PfGW456L13_664 0.19 -1.0
755,122 - PfGW456L13_664 0.19 -0.3
755,122 - PfGW456L13_664 0.19 -0.4
755,122 - PfGW456L13_664 0.19 -0.2
755,122 - PfGW456L13_664 0.19 -0.1
755,122 - PfGW456L13_664 0.19 -0.6
755,122 - PfGW456L13_664 0.19 -0.4
755,122 - PfGW456L13_664 0.19 -0.6
755,171 - PfGW456L13_664 0.24 -1.0
755,275 - PfGW456L13_664 0.34 +0.3
755,355 - PfGW456L13_664 0.41 -0.2
755,355 - PfGW456L13_664 0.41 -0.8
755,355 - PfGW456L13_664 0.41 -1.0
755,428 - PfGW456L13_664 0.48 +0.4
755,428 - PfGW456L13_664 0.48 +1.0
755,430 - PfGW456L13_664 0.48 +0.2
755,430 - PfGW456L13_664 0.48 +0.0
755,430 - PfGW456L13_664 0.48 -0.3
755,430 - PfGW456L13_664 0.48 +0.4
755,430 - PfGW456L13_664 0.48 -0.2
755,430 - PfGW456L13_664 0.48 -0.3
755,430 - PfGW456L13_664 0.48 -0.3
755,430 - PfGW456L13_664 0.48 +0.4
755,430 - PfGW456L13_664 0.48 -1.7
755,512 - PfGW456L13_664 0.56 -1.1
755,763 + PfGW456L13_664 0.79 +0.6
755,763 + PfGW456L13_664 0.79 +0.7
755,764 - PfGW456L13_664 0.79 -1.5
755,764 - PfGW456L13_664 0.79 +0.3
755,775 + PfGW456L13_664 0.80 -0.3
755,775 + PfGW456L13_664 0.80 +0.6
755,776 - PfGW456L13_664 0.80 -0.1
755,809 + PfGW456L13_664 0.83 +0.4
755,809 + PfGW456L13_664 0.83 +0.3
755,809 + PfGW456L13_664 0.83 +0.4
755,810 - PfGW456L13_664 0.83 -1.7
755,815 - PfGW456L13_664 0.84 +0.1
755,832 - PfGW456L13_664 0.85 -1.0
755,933 + +0.6
755,940 + -2.1
755,940 + -0.5
755,940 + -2.6
755,940 + -0.6
755,941 - +0.7
755,941 - -0.2
756,010 + +0.3
756,010 + -0.0
756,010 + -0.5
756,010 + +0.5
756,010 + -0.6
756,010 + -0.4
756,011 - -0.3
756,011 - -0.8
756,011 - -0.5
756,011 - +0.2
756,020 + -1.1
756,020 + +0.1
756,020 + +0.3
756,020 + -0.8
756,021 - +0.1
756,021 - -0.2
756,021 - -0.0
756,021 - +1.6
756,021 - -0.2
756,021 - -1.4
756,021 - -0.1
756,040 + -0.1
756,040 + +1.1
756,041 - -0.9
757,161 - -0.6
757,165 - +1.8
757,165 - -0.1
757,165 - -2.9
757,165 - +0.1

Or see this region's nucleotide sequence