Strain Fitness in Pseudomonas sp. RS175 around PFR28_04320

Experiment: D-Fructose carbon 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04319 and PFR28_04320 are separated by 74 nucleotidesPFR28_04320 and PFR28_04321 overlap by 4 nucleotides PFR28_04319: PFR28_04319 - 2-octaprenylphenol hydroxylase, at 4,927,556 to 4,928,779 _04319 PFR28_04320: PFR28_04320 - 2-octaprenyl-6-methoxyphenol hydroxylase, at 4,928,854 to 4,930,053 _04320 PFR28_04321: PFR28_04321 - Xaa-Pro aminopeptidase, at 4,930,050 to 4,931,384 _04321 Position (kb) 4928 4929 4930 4931Strain fitness (log2 ratio) -2 -1 0 1 2at 4928.857 kb on + strandat 4928.857 kb on + strandat 4928.857 kb on + strandat 4928.857 kb on + strandat 4928.857 kb on + strandat 4928.858 kb on - strandat 4928.858 kb on - strandat 4928.858 kb on - strandat 4930.110 kb on + strandat 4930.110 kb on + strandat 4930.110 kb on + strandat 4930.110 kb on + strandat 4930.110 kb on + strandat 4930.110 kb on + strandat 4930.111 kb on - strandat 4930.111 kb on - strandat 4930.111 kb on - strandat 4930.197 kb on + strand, within PFR28_04321at 4930.198 kb on - strand, within PFR28_04321at 4930.222 kb on + strand, within PFR28_04321at 4930.222 kb on + strand, within PFR28_04321at 4930.222 kb on + strand, within PFR28_04321at 4930.222 kb on + strand, within PFR28_04321at 4930.222 kb on + strand, within PFR28_04321at 4930.222 kb on + strand, within PFR28_04321at 4930.222 kb on + strand, within PFR28_04321at 4930.222 kb on + strand, within PFR28_04321at 4930.222 kb on + strand, within PFR28_04321at 4930.222 kb on + strand, within PFR28_04321at 4930.222 kb on + strand, within PFR28_04321at 4930.223 kb on - strand, within PFR28_04321at 4930.223 kb on - strand, within PFR28_04321at 4930.223 kb on - strand, within PFR28_04321at 4930.223 kb on - strand, within PFR28_04321at 4930.223 kb on - strand, within PFR28_04321at 4930.223 kb on - strand, within PFR28_04321at 4930.223 kb on - strand, within PFR28_04321at 4930.223 kb on - strand, within PFR28_04321at 4930.223 kb on - strand, within PFR28_04321at 4930.223 kb on - strand, within PFR28_04321at 4930.296 kb on + strand, within PFR28_04321at 4930.296 kb on + strand, within PFR28_04321at 4930.296 kb on + strand, within PFR28_04321at 4930.296 kb on + strand, within PFR28_04321at 4930.296 kb on + strand, within PFR28_04321at 4930.296 kb on + strand, within PFR28_04321at 4930.296 kb on + strand, within PFR28_04321at 4930.297 kb on - strand, within PFR28_04321at 4930.297 kb on - strand, within PFR28_04321at 4930.297 kb on - strand, within PFR28_04321at 4930.297 kb on - strand, within PFR28_04321at 4930.297 kb on - strand, within PFR28_04321at 4930.297 kb on - strand, within PFR28_04321at 4930.340 kb on + strand, within PFR28_04321at 4930.340 kb on + strand, within PFR28_04321at 4930.340 kb on + strand, within PFR28_04321at 4930.340 kb on + strand, within PFR28_04321at 4930.340 kb on + strand, within PFR28_04321at 4930.341 kb on - strand, within PFR28_04321at 4930.341 kb on - strand, within PFR28_04321at 4930.341 kb on - strand, within PFR28_04321at 4930.341 kb on - strand, within PFR28_04321at 4930.341 kb on - strand, within PFR28_04321at 4930.341 kb on - strand, within PFR28_04321at 4930.341 kb on - strand, within PFR28_04321at 4930.342 kb on + strand, within PFR28_04321at 4930.342 kb on + strand, within PFR28_04321at 4930.342 kb on + strand, within PFR28_04321at 4930.342 kb on + strand, within PFR28_04321at 4930.342 kb on + strand, within PFR28_04321at 4930.342 kb on + strand, within PFR28_04321at 4930.342 kb on + strand, within PFR28_04321at 4930.342 kb on + strand, within PFR28_04321at 4930.342 kb on + strand, within PFR28_04321at 4930.342 kb on + strand, within PFR28_04321at 4930.342 kb on + strand, within PFR28_04321at 4930.342 kb on + strand, within PFR28_04321at 4930.342 kb on + strand, within PFR28_04321at 4930.342 kb on + strand, within PFR28_04321at 4930.342 kb on + strand, within PFR28_04321at 4930.342 kb on + strand, within PFR28_04321at 4930.342 kb on + strand, within PFR28_04321at 4930.342 kb on + strand, within PFR28_04321at 4930.342 kb on + strand, within PFR28_04321at 4930.342 kb on + strand, within PFR28_04321at 4930.342 kb on + strand, within PFR28_04321at 4930.342 kb on + strand, within PFR28_04321at 4930.342 kb on + strand, within PFR28_04321at 4930.343 kb on - strand, within PFR28_04321at 4930.343 kb on - strand, within PFR28_04321at 4930.343 kb on - strand, within PFR28_04321at 4930.343 kb on - strand, within PFR28_04321at 4930.343 kb on - strand, within PFR28_04321at 4930.343 kb on - strand, within PFR28_04321at 4930.343 kb on - strand, within PFR28_04321at 4930.343 kb on - strand, within PFR28_04321at 4930.343 kb on - strand, within PFR28_04321at 4930.343 kb on - strand, within PFR28_04321at 4930.343 kb on - strand, within PFR28_04321at 4930.343 kb on - strand, within PFR28_04321at 4930.343 kb on - strand, within PFR28_04321at 4930.343 kb on - strand, within PFR28_04321at 4930.343 kb on - strand, within PFR28_04321at 4930.343 kb on - strand, within PFR28_04321at 4930.343 kb on - strand, within PFR28_04321at 4930.343 kb on - strand, within PFR28_04321at 4930.343 kb on - strand, within PFR28_04321at 4930.343 kb on - strand, within PFR28_04321at 4930.343 kb on - strand, within PFR28_04321at 4930.354 kb on + strand, within PFR28_04321at 4930.355 kb on - strand, within PFR28_04321at 4930.516 kb on + strand, within PFR28_04321at 4930.517 kb on - strand, within PFR28_04321at 4930.517 kb on - strand, within PFR28_04321at 4930.517 kb on - strand, within PFR28_04321at 4930.582 kb on + strand, within PFR28_04321at 4930.582 kb on + strand, within PFR28_04321at 4930.582 kb on + strand, within PFR28_04321at 4930.582 kb on + strand, within PFR28_04321at 4930.583 kb on - strand, within PFR28_04321at 4930.583 kb on - strand, within PFR28_04321at 4930.583 kb on - strand, within PFR28_04321at 4930.583 kb on - strand, within PFR28_04321at 4930.583 kb on - strand, within PFR28_04321at 4930.655 kb on - strand, within PFR28_04321at 4930.655 kb on - strand, within PFR28_04321at 4930.699 kb on + strand, within PFR28_04321at 4930.700 kb on - strand, within PFR28_04321at 4930.700 kb on - strand, within PFR28_04321at 4930.736 kb on - strand, within PFR28_04321at 4930.759 kb on + strand, within PFR28_04321at 4930.759 kb on + strand, within PFR28_04321at 4930.759 kb on + strand, within PFR28_04321at 4930.760 kb on - strand, within PFR28_04321at 4930.760 kb on - strand, within PFR28_04321at 4930.760 kb on - strand, within PFR28_04321at 4930.765 kb on + strand, within PFR28_04321at 4930.765 kb on + strand, within PFR28_04321at 4930.766 kb on - strand, within PFR28_04321at 4930.859 kb on + strand, within PFR28_04321at 4930.860 kb on - strand, within PFR28_04321at 4930.860 kb on - strand, within PFR28_04321at 4930.860 kb on - strand, within PFR28_04321at 4930.861 kb on + strand, within PFR28_04321at 4931.002 kb on + strand, within PFR28_04321at 4931.003 kb on - strand, within PFR28_04321at 4931.022 kb on + strand, within PFR28_04321at 4931.022 kb on + strand, within PFR28_04321at 4931.022 kb on + strand, within PFR28_04321at 4931.022 kb on + strand, within PFR28_04321at 4931.022 kb on + strand, within PFR28_04321at 4931.023 kb on - strand, within PFR28_04321at 4931.023 kb on - strand, within PFR28_04321at 4931.023 kb on - strand, within PFR28_04321at 4931.023 kb on - strand, within PFR28_04321at 4931.023 kb on - strand, within PFR28_04321at 4931.023 kb on - strand, within PFR28_04321at 4931.023 kb on - strand, within PFR28_04321at 4931.023 kb on - strand, within PFR28_04321at 4931.023 kb on - strand, within PFR28_04321at 4931.023 kb on - strand, within PFR28_04321at 4931.023 kb on - strand, within PFR28_04321at 4931.023 kb on - strand, within PFR28_04321at 4931.023 kb on - strand, within PFR28_04321at 4931.023 kb on - strand, within PFR28_04321

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose carbon 10 mM
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4,928,857 + -0.4
4,928,857 + -1.6
4,928,857 + +2.5
4,928,857 + -0.1
4,928,857 + -0.1
4,928,858 - -1.8
4,928,858 - +0.2
4,928,858 - +0.0
4,930,110 + +0.2
4,930,110 + -0.6
4,930,110 + -1.2
4,930,110 + +0.2
4,930,110 + -2.5
4,930,110 + -0.3
4,930,111 - +0.6
4,930,111 - -1.5
4,930,111 - -1.6
4,930,197 + PFR28_04321 0.11 +1.2
4,930,198 - PFR28_04321 0.11 +0.5
4,930,222 + PFR28_04321 0.13 -0.2
4,930,222 + PFR28_04321 0.13 -1.4
4,930,222 + PFR28_04321 0.13 +0.8
4,930,222 + PFR28_04321 0.13 +0.3
4,930,222 + PFR28_04321 0.13 -1.1
4,930,222 + PFR28_04321 0.13 +0.3
4,930,222 + PFR28_04321 0.13 +1.0
4,930,222 + PFR28_04321 0.13 -0.4
4,930,222 + PFR28_04321 0.13 -0.8
4,930,222 + PFR28_04321 0.13 +1.8
4,930,222 + PFR28_04321 0.13 +0.1
4,930,223 - PFR28_04321 0.13 +0.4
4,930,223 - PFR28_04321 0.13 -0.1
4,930,223 - PFR28_04321 0.13 +0.3
4,930,223 - PFR28_04321 0.13 -0.7
4,930,223 - PFR28_04321 0.13 -0.3
4,930,223 - PFR28_04321 0.13 -0.7
4,930,223 - PFR28_04321 0.13 -0.2
4,930,223 - PFR28_04321 0.13 -0.6
4,930,223 - PFR28_04321 0.13 -0.5
4,930,223 - PFR28_04321 0.13 +0.5
4,930,296 + PFR28_04321 0.18 +1.8
4,930,296 + PFR28_04321 0.18 -0.5
4,930,296 + PFR28_04321 0.18 -0.5
4,930,296 + PFR28_04321 0.18 +1.4
4,930,296 + PFR28_04321 0.18 +0.8
4,930,296 + PFR28_04321 0.18 +1.2
4,930,296 + PFR28_04321 0.18 +0.6
4,930,297 - PFR28_04321 0.19 -0.5
4,930,297 - PFR28_04321 0.19 -0.8
4,930,297 - PFR28_04321 0.19 -0.2
4,930,297 - PFR28_04321 0.19 -0.3
4,930,297 - PFR28_04321 0.19 +0.2
4,930,297 - PFR28_04321 0.19 +0.6
4,930,340 + PFR28_04321 0.22 +0.8
4,930,340 + PFR28_04321 0.22 -0.5
4,930,340 + PFR28_04321 0.22 +0.2
4,930,340 + PFR28_04321 0.22 +0.0
4,930,340 + PFR28_04321 0.22 +0.0
4,930,341 - PFR28_04321 0.22 +0.0
4,930,341 - PFR28_04321 0.22 -0.3
4,930,341 - PFR28_04321 0.22 -0.4
4,930,341 - PFR28_04321 0.22 +1.6
4,930,341 - PFR28_04321 0.22 -0.7
4,930,341 - PFR28_04321 0.22 -0.1
4,930,341 - PFR28_04321 0.22 -0.2
4,930,342 + PFR28_04321 0.22 +0.2
4,930,342 + PFR28_04321 0.22 -2.1
4,930,342 + PFR28_04321 0.22 +0.6
4,930,342 + PFR28_04321 0.22 +0.1
4,930,342 + PFR28_04321 0.22 -0.5
4,930,342 + PFR28_04321 0.22 -0.0
4,930,342 + PFR28_04321 0.22 -0.1
4,930,342 + PFR28_04321 0.22 -0.2
4,930,342 + PFR28_04321 0.22 +0.4
4,930,342 + PFR28_04321 0.22 +0.8
4,930,342 + PFR28_04321 0.22 +0.8
4,930,342 + PFR28_04321 0.22 +0.9
4,930,342 + PFR28_04321 0.22 +0.1
4,930,342 + PFR28_04321 0.22 -1.4
4,930,342 + PFR28_04321 0.22 -0.5
4,930,342 + PFR28_04321 0.22 +0.1
4,930,342 + PFR28_04321 0.22 +0.8
4,930,342 + PFR28_04321 0.22 -1.2
4,930,342 + PFR28_04321 0.22 +0.7
4,930,342 + PFR28_04321 0.22 -0.2
4,930,342 + PFR28_04321 0.22 -1.2
4,930,342 + PFR28_04321 0.22 +0.2
4,930,342 + PFR28_04321 0.22 -0.3
4,930,343 - PFR28_04321 0.22 -0.5
4,930,343 - PFR28_04321 0.22 -0.4
4,930,343 - PFR28_04321 0.22 +1.2
4,930,343 - PFR28_04321 0.22 +0.4
4,930,343 - PFR28_04321 0.22 +0.6
4,930,343 - PFR28_04321 0.22 -0.4
4,930,343 - PFR28_04321 0.22 +0.8
4,930,343 - PFR28_04321 0.22 +0.2
4,930,343 - PFR28_04321 0.22 +0.2
4,930,343 - PFR28_04321 0.22 -0.2
4,930,343 - PFR28_04321 0.22 -0.4
4,930,343 - PFR28_04321 0.22 -0.1
4,930,343 - PFR28_04321 0.22 +0.5
4,930,343 - PFR28_04321 0.22 -0.9
4,930,343 - PFR28_04321 0.22 +0.7
4,930,343 - PFR28_04321 0.22 +0.5
4,930,343 - PFR28_04321 0.22 -0.7
4,930,343 - PFR28_04321 0.22 +0.1
4,930,343 - PFR28_04321 0.22 -0.5
4,930,343 - PFR28_04321 0.22 -0.8
4,930,343 - PFR28_04321 0.22 +1.0
4,930,354 + PFR28_04321 0.23 +0.3
4,930,355 - PFR28_04321 0.23 +0.2
4,930,516 + PFR28_04321 0.35 -0.5
4,930,517 - PFR28_04321 0.35 -1.2
4,930,517 - PFR28_04321 0.35 -1.9
4,930,517 - PFR28_04321 0.35 -0.2
4,930,582 + PFR28_04321 0.40 +0.2
4,930,582 + PFR28_04321 0.40 -0.4
4,930,582 + PFR28_04321 0.40 -0.2
4,930,582 + PFR28_04321 0.40 +0.0
4,930,583 - PFR28_04321 0.40 +0.8
4,930,583 - PFR28_04321 0.40 +0.3
4,930,583 - PFR28_04321 0.40 -1.0
4,930,583 - PFR28_04321 0.40 -0.0
4,930,583 - PFR28_04321 0.40 -0.4
4,930,655 - PFR28_04321 0.45 +0.5
4,930,655 - PFR28_04321 0.45 -1.3
4,930,699 + PFR28_04321 0.49 -0.3
4,930,700 - PFR28_04321 0.49 +0.2
4,930,700 - PFR28_04321 0.49 +0.0
4,930,736 - PFR28_04321 0.51 +0.5
4,930,759 + PFR28_04321 0.53 -0.1
4,930,759 + PFR28_04321 0.53 +0.6
4,930,759 + PFR28_04321 0.53 +0.4
4,930,760 - PFR28_04321 0.53 +0.2
4,930,760 - PFR28_04321 0.53 +0.4
4,930,760 - PFR28_04321 0.53 -0.1
4,930,765 + PFR28_04321 0.54 -0.1
4,930,765 + PFR28_04321 0.54 -0.2
4,930,766 - PFR28_04321 0.54 +0.9
4,930,859 + PFR28_04321 0.61 +0.2
4,930,860 - PFR28_04321 0.61 +0.2
4,930,860 - PFR28_04321 0.61 -0.6
4,930,860 - PFR28_04321 0.61 -0.7
4,930,861 + PFR28_04321 0.61 -0.8
4,931,002 + PFR28_04321 0.71 -0.4
4,931,003 - PFR28_04321 0.71 +0.1
4,931,022 + PFR28_04321 0.73 -0.5
4,931,022 + PFR28_04321 0.73 -0.2
4,931,022 + PFR28_04321 0.73 +0.2
4,931,022 + PFR28_04321 0.73 -0.5
4,931,022 + PFR28_04321 0.73 +0.1
4,931,023 - PFR28_04321 0.73 -0.3
4,931,023 - PFR28_04321 0.73 +0.9
4,931,023 - PFR28_04321 0.73 +0.2
4,931,023 - PFR28_04321 0.73 -1.1
4,931,023 - PFR28_04321 0.73 +0.4
4,931,023 - PFR28_04321 0.73 -0.5
4,931,023 - PFR28_04321 0.73 +1.3
4,931,023 - PFR28_04321 0.73 -0.6
4,931,023 - PFR28_04321 0.73 +0.4
4,931,023 - PFR28_04321 0.73 +0.1
4,931,023 - PFR28_04321 0.73 -0.6
4,931,023 - PFR28_04321 0.73 +0.4
4,931,023 - PFR28_04321 0.73 +0.3
4,931,023 - PFR28_04321 0.73 -0.0

Or see this region's nucleotide sequence