Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS28560

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS28555 and PFLU_RS28560 are separated by 242 nucleotidesPFLU_RS28560 and PFLU_RS28565 are separated by 61 nucleotidesPFLU_RS28565 and PFLU_RS28570 are separated by 69 nucleotides PFLU_RS28555: PFLU_RS28555 - hypothetical protein, at 6,353,585 to 6,354,643 _RS28555 PFLU_RS28560: PFLU_RS28560 - L-cystine transporter, at 6,354,886 to 6,356,277 _RS28560 PFLU_RS28565: PFLU_RS28565 - dihydrofolate reductase, at 6,356,339 to 6,356,884 _RS28565 PFLU_RS28570: PFLU_RS28570 - DUF2868 domain-containing protein, at 6,356,954 to 6,358,333 _RS28570 Position (kb) 6354 6355 6356 6357Strain fitness (log2 ratio) -2 -1 0 1 2at 6353.903 kb on + strand, within PFLU_RS28555at 6353.903 kb on + strand, within PFLU_RS28555at 6353.904 kb on - strand, within PFLU_RS28555at 6353.904 kb on - strand, within PFLU_RS28555at 6353.904 kb on - strand, within PFLU_RS28555at 6353.922 kb on + strand, within PFLU_RS28555at 6353.922 kb on + strand, within PFLU_RS28555at 6353.923 kb on - strand, within PFLU_RS28555at 6353.923 kb on - strand, within PFLU_RS28555at 6353.923 kb on - strand, within PFLU_RS28555at 6353.923 kb on - strand, within PFLU_RS28555at 6354.024 kb on + strand, within PFLU_RS28555at 6354.024 kb on + strand, within PFLU_RS28555at 6354.024 kb on + strand, within PFLU_RS28555at 6354.025 kb on - strand, within PFLU_RS28555at 6354.025 kb on - strand, within PFLU_RS28555at 6354.025 kb on - strand, within PFLU_RS28555at 6354.025 kb on - strand, within PFLU_RS28555at 6354.025 kb on - strand, within PFLU_RS28555at 6354.025 kb on - strand, within PFLU_RS28555at 6354.030 kb on + strand, within PFLU_RS28555at 6354.030 kb on + strand, within PFLU_RS28555at 6354.030 kb on + strand, within PFLU_RS28555at 6354.030 kb on + strand, within PFLU_RS28555at 6354.030 kb on + strand, within PFLU_RS28555at 6354.030 kb on + strand, within PFLU_RS28555at 6354.031 kb on - strand, within PFLU_RS28555at 6354.031 kb on - strand, within PFLU_RS28555at 6354.031 kb on - strand, within PFLU_RS28555at 6354.031 kb on - strand, within PFLU_RS28555at 6354.087 kb on + strand, within PFLU_RS28555at 6354.087 kb on + strand, within PFLU_RS28555at 6354.087 kb on + strand, within PFLU_RS28555at 6354.087 kb on + strand, within PFLU_RS28555at 6354.087 kb on + strand, within PFLU_RS28555at 6354.087 kb on + strand, within PFLU_RS28555at 6354.087 kb on + strand, within PFLU_RS28555at 6354.087 kb on + strand, within PFLU_RS28555at 6354.087 kb on + strand, within PFLU_RS28555at 6354.087 kb on + strand, within PFLU_RS28555at 6354.087 kb on + strand, within PFLU_RS28555at 6354.087 kb on + strand, within PFLU_RS28555at 6354.087 kb on + strand, within PFLU_RS28555at 6354.087 kb on + strand, within PFLU_RS28555at 6354.087 kb on + strand, within PFLU_RS28555at 6354.088 kb on - strand, within PFLU_RS28555at 6354.088 kb on - strand, within PFLU_RS28555at 6354.088 kb on - strand, within PFLU_RS28555at 6354.088 kb on - strand, within PFLU_RS28555at 6354.088 kb on - strand, within PFLU_RS28555at 6354.088 kb on - strand, within PFLU_RS28555at 6354.088 kb on - strand, within PFLU_RS28555at 6354.088 kb on - strand, within PFLU_RS28555at 6354.088 kb on - strand, within PFLU_RS28555at 6354.088 kb on - strand, within PFLU_RS28555at 6354.088 kb on - strand, within PFLU_RS28555at 6354.088 kb on - strand, within PFLU_RS28555at 6354.088 kb on - strand, within PFLU_RS28555at 6354.088 kb on - strand, within PFLU_RS28555at 6354.088 kb on - strand, within PFLU_RS28555at 6354.088 kb on - strand, within PFLU_RS28555at 6354.088 kb on - strand, within PFLU_RS28555at 6354.088 kb on - strand, within PFLU_RS28555at 6354.120 kb on + strand, within PFLU_RS28555at 6354.193 kb on - strand, within PFLU_RS28555at 6354.193 kb on - strand, within PFLU_RS28555at 6354.327 kb on + strand, within PFLU_RS28555at 6354.327 kb on + strand, within PFLU_RS28555at 6354.327 kb on + strand, within PFLU_RS28555at 6354.327 kb on + strand, within PFLU_RS28555at 6354.327 kb on + strand, within PFLU_RS28555at 6354.327 kb on + strand, within PFLU_RS28555at 6354.327 kb on + strand, within PFLU_RS28555at 6354.327 kb on + strand, within PFLU_RS28555at 6354.328 kb on - strand, within PFLU_RS28555at 6354.328 kb on - strand, within PFLU_RS28555at 6354.328 kb on - strand, within PFLU_RS28555at 6354.328 kb on - strand, within PFLU_RS28555at 6354.328 kb on - strand, within PFLU_RS28555at 6354.328 kb on - strand, within PFLU_RS28555at 6354.328 kb on - strand, within PFLU_RS28555at 6354.328 kb on - strand, within PFLU_RS28555at 6354.328 kb on - strand, within PFLU_RS28555at 6354.328 kb on - strand, within PFLU_RS28555at 6354.328 kb on - strand, within PFLU_RS28555at 6354.328 kb on - strand, within PFLU_RS28555at 6354.328 kb on - strand, within PFLU_RS28555at 6354.328 kb on - strand, within PFLU_RS28555at 6354.328 kb on - strand, within PFLU_RS28555at 6354.328 kb on - strand, within PFLU_RS28555at 6354.330 kb on + strand, within PFLU_RS28555at 6354.330 kb on + strand, within PFLU_RS28555at 6354.330 kb on + strand, within PFLU_RS28555at 6354.331 kb on - strand, within PFLU_RS28555at 6354.331 kb on - strand, within PFLU_RS28555at 6354.331 kb on - strand, within PFLU_RS28555at 6354.331 kb on - strand, within PFLU_RS28555at 6354.331 kb on - strand, within PFLU_RS28555at 6354.350 kb on - strand, within PFLU_RS28555at 6354.350 kb on - strand, within PFLU_RS28555at 6354.376 kb on + strand, within PFLU_RS28555at 6354.376 kb on + strand, within PFLU_RS28555at 6354.376 kb on + strand, within PFLU_RS28555at 6354.376 kb on + strand, within PFLU_RS28555at 6354.376 kb on + strand, within PFLU_RS28555at 6354.376 kb on + strand, within PFLU_RS28555at 6354.376 kb on + strand, within PFLU_RS28555at 6354.377 kb on - strand, within PFLU_RS28555at 6354.377 kb on - strand, within PFLU_RS28555at 6354.432 kb on + strand, within PFLU_RS28555at 6354.432 kb on + strand, within PFLU_RS28555at 6354.432 kb on + strand, within PFLU_RS28555at 6354.432 kb on + strand, within PFLU_RS28555at 6354.432 kb on + strand, within PFLU_RS28555at 6354.433 kb on - strand, within PFLU_RS28555at 6354.433 kb on - strand, within PFLU_RS28555at 6354.433 kb on - strand, within PFLU_RS28555at 6354.433 kb on - strand, within PFLU_RS28555at 6354.433 kb on - strand, within PFLU_RS28555at 6354.433 kb on - strand, within PFLU_RS28555at 6354.433 kb on - strand, within PFLU_RS28555at 6354.433 kb on - strand, within PFLU_RS28555at 6354.433 kb on - strand, within PFLU_RS28555at 6354.499 kb on + strand, within PFLU_RS28555at 6354.624 kb on - strandat 6354.643 kb on + strandat 6354.644 kb on - strandat 6354.718 kb on + strandat 6354.765 kb on + strandat 6354.802 kb on + strandat 6354.812 kb on + strandat 6354.812 kb on + strandat 6354.813 kb on - strandat 6354.825 kb on + strandat 6354.825 kb on + strandat 6354.826 kb on - strandat 6354.911 kb on + strandat 6354.911 kb on + strandat 6354.912 kb on - strandat 6354.912 kb on - strandat 6354.912 kb on - strandat 6355.036 kb on + strand, within PFLU_RS28560at 6355.036 kb on + strand, within PFLU_RS28560at 6355.099 kb on + strand, within PFLU_RS28560at 6355.100 kb on - strand, within PFLU_RS28560at 6355.103 kb on + strand, within PFLU_RS28560at 6355.103 kb on + strand, within PFLU_RS28560at 6355.103 kb on + strand, within PFLU_RS28560at 6355.103 kb on + strand, within PFLU_RS28560at 6355.103 kb on + strand, within PFLU_RS28560at 6355.103 kb on + strand, within PFLU_RS28560at 6355.103 kb on + strand, within PFLU_RS28560at 6355.103 kb on + strand, within PFLU_RS28560at 6355.104 kb on - strand, within PFLU_RS28560at 6355.104 kb on - strand, within PFLU_RS28560at 6355.104 kb on - strand, within PFLU_RS28560at 6355.104 kb on - strand, within PFLU_RS28560at 6355.104 kb on - strand, within PFLU_RS28560at 6355.104 kb on - strand, within PFLU_RS28560at 6355.104 kb on - strand, within PFLU_RS28560at 6355.104 kb on - strand, within PFLU_RS28560at 6355.104 kb on - strand, within PFLU_RS28560at 6355.137 kb on - strand, within PFLU_RS28560at 6355.345 kb on + strand, within PFLU_RS28560at 6355.345 kb on + strand, within PFLU_RS28560at 6355.346 kb on - strand, within PFLU_RS28560at 6355.600 kb on + strand, within PFLU_RS28560at 6355.687 kb on + strand, within PFLU_RS28560at 6355.687 kb on + strand, within PFLU_RS28560at 6355.688 kb on - strand, within PFLU_RS28560at 6355.688 kb on - strand, within PFLU_RS28560at 6355.688 kb on - strand, within PFLU_RS28560at 6356.084 kb on + strand, within PFLU_RS28560at 6356.084 kb on + strand, within PFLU_RS28560at 6356.085 kb on - strand, within PFLU_RS28560at 6356.278 kb on + strandat 6356.896 kb on + strandat 6357.000 kb on + strandat 6357.001 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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6,353,903 + PFLU_RS28555 0.30 +0.0
6,353,903 + PFLU_RS28555 0.30 -0.8
6,353,904 - PFLU_RS28555 0.30 -1.1
6,353,904 - PFLU_RS28555 0.30 +0.5
6,353,904 - PFLU_RS28555 0.30 -1.0
6,353,922 + PFLU_RS28555 0.32 -2.2
6,353,922 + PFLU_RS28555 0.32 +1.5
6,353,923 - PFLU_RS28555 0.32 -0.7
6,353,923 - PFLU_RS28555 0.32 +0.2
6,353,923 - PFLU_RS28555 0.32 +1.1
6,353,923 - PFLU_RS28555 0.32 +0.3
6,354,024 + PFLU_RS28555 0.41 -0.5
6,354,024 + PFLU_RS28555 0.41 +0.9
6,354,024 + PFLU_RS28555 0.41 +0.1
6,354,025 - PFLU_RS28555 0.42 -0.7
6,354,025 - PFLU_RS28555 0.42 -2.0
6,354,025 - PFLU_RS28555 0.42 +0.5
6,354,025 - PFLU_RS28555 0.42 -1.0
6,354,025 - PFLU_RS28555 0.42 +0.4
6,354,025 - PFLU_RS28555 0.42 -0.4
6,354,030 + PFLU_RS28555 0.42 -0.0
6,354,030 + PFLU_RS28555 0.42 +0.8
6,354,030 + PFLU_RS28555 0.42 +1.8
6,354,030 + PFLU_RS28555 0.42 +0.4
6,354,030 + PFLU_RS28555 0.42 +0.6
6,354,030 + PFLU_RS28555 0.42 +1.4
6,354,031 - PFLU_RS28555 0.42 +0.7
6,354,031 - PFLU_RS28555 0.42 +0.2
6,354,031 - PFLU_RS28555 0.42 -0.5
6,354,031 - PFLU_RS28555 0.42 -0.2
6,354,087 + PFLU_RS28555 0.47 -1.8
6,354,087 + PFLU_RS28555 0.47 -0.3
6,354,087 + PFLU_RS28555 0.47 +1.5
6,354,087 + PFLU_RS28555 0.47 -1.9
6,354,087 + PFLU_RS28555 0.47 +0.0
6,354,087 + PFLU_RS28555 0.47 -2.5
6,354,087 + PFLU_RS28555 0.47 +0.7
6,354,087 + PFLU_RS28555 0.47 +1.0
6,354,087 + PFLU_RS28555 0.47 +0.6
6,354,087 + PFLU_RS28555 0.47 +0.6
6,354,087 + PFLU_RS28555 0.47 +0.8
6,354,087 + PFLU_RS28555 0.47 +0.5
6,354,087 + PFLU_RS28555 0.47 -1.5
6,354,087 + PFLU_RS28555 0.47 -0.8
6,354,087 + PFLU_RS28555 0.47 -0.3
6,354,088 - PFLU_RS28555 0.47 -0.2
6,354,088 - PFLU_RS28555 0.47 +0.6
6,354,088 - PFLU_RS28555 0.47 +0.4
6,354,088 - PFLU_RS28555 0.47 +0.3
6,354,088 - PFLU_RS28555 0.47 -0.1
6,354,088 - PFLU_RS28555 0.47 +0.4
6,354,088 - PFLU_RS28555 0.47 +0.3
6,354,088 - PFLU_RS28555 0.47 +0.5
6,354,088 - PFLU_RS28555 0.47 +0.3
6,354,088 - PFLU_RS28555 0.47 +1.7
6,354,088 - PFLU_RS28555 0.47 +1.1
6,354,088 - PFLU_RS28555 0.47 +0.1
6,354,088 - PFLU_RS28555 0.47 -0.2
6,354,088 - PFLU_RS28555 0.47 -1.5
6,354,088 - PFLU_RS28555 0.47 -0.7
6,354,088 - PFLU_RS28555 0.47 +1.6
6,354,088 - PFLU_RS28555 0.47 -1.2
6,354,088 - PFLU_RS28555 0.47 +0.9
6,354,120 + PFLU_RS28555 0.51 +0.8
6,354,193 - PFLU_RS28555 0.57 -1.3
6,354,193 - PFLU_RS28555 0.57 +1.6
6,354,327 + PFLU_RS28555 0.70 +0.3
6,354,327 + PFLU_RS28555 0.70 -0.3
6,354,327 + PFLU_RS28555 0.70 +0.7
6,354,327 + PFLU_RS28555 0.70 +1.2
6,354,327 + PFLU_RS28555 0.70 -0.1
6,354,327 + PFLU_RS28555 0.70 +0.6
6,354,327 + PFLU_RS28555 0.70 -0.2
6,354,327 + PFLU_RS28555 0.70 +0.0
6,354,328 - PFLU_RS28555 0.70 +0.0
6,354,328 - PFLU_RS28555 0.70 +0.2
6,354,328 - PFLU_RS28555 0.70 -0.8
6,354,328 - PFLU_RS28555 0.70 +0.8
6,354,328 - PFLU_RS28555 0.70 +0.5
6,354,328 - PFLU_RS28555 0.70 -0.1
6,354,328 - PFLU_RS28555 0.70 +0.8
6,354,328 - PFLU_RS28555 0.70 -0.7
6,354,328 - PFLU_RS28555 0.70 +1.1
6,354,328 - PFLU_RS28555 0.70 +0.6
6,354,328 - PFLU_RS28555 0.70 +0.9
6,354,328 - PFLU_RS28555 0.70 -1.7
6,354,328 - PFLU_RS28555 0.70 +1.8
6,354,328 - PFLU_RS28555 0.70 -2.2
6,354,328 - PFLU_RS28555 0.70 +0.5
6,354,328 - PFLU_RS28555 0.70 -1.0
6,354,330 + PFLU_RS28555 0.70 -1.5
6,354,330 + PFLU_RS28555 0.70 -2.2
6,354,330 + PFLU_RS28555 0.70 -0.0
6,354,331 - PFLU_RS28555 0.70 -0.8
6,354,331 - PFLU_RS28555 0.70 -0.1
6,354,331 - PFLU_RS28555 0.70 +0.8
6,354,331 - PFLU_RS28555 0.70 +0.8
6,354,331 - PFLU_RS28555 0.70 +0.6
6,354,350 - PFLU_RS28555 0.72 -1.1
6,354,350 - PFLU_RS28555 0.72 +1.5
6,354,376 + PFLU_RS28555 0.75 +0.8
6,354,376 + PFLU_RS28555 0.75 +0.6
6,354,376 + PFLU_RS28555 0.75 +1.7
6,354,376 + PFLU_RS28555 0.75 +0.2
6,354,376 + PFLU_RS28555 0.75 +0.1
6,354,376 + PFLU_RS28555 0.75 +0.8
6,354,376 + PFLU_RS28555 0.75 -1.4
6,354,377 - PFLU_RS28555 0.75 +0.9
6,354,377 - PFLU_RS28555 0.75 -1.4
6,354,432 + PFLU_RS28555 0.80 +1.5
6,354,432 + PFLU_RS28555 0.80 +0.1
6,354,432 + PFLU_RS28555 0.80 -1.0
6,354,432 + PFLU_RS28555 0.80 -0.4
6,354,432 + PFLU_RS28555 0.80 -0.3
6,354,433 - PFLU_RS28555 0.80 -0.6
6,354,433 - PFLU_RS28555 0.80 -0.9
6,354,433 - PFLU_RS28555 0.80 +0.8
6,354,433 - PFLU_RS28555 0.80 +0.1
6,354,433 - PFLU_RS28555 0.80 -2.1
6,354,433 - PFLU_RS28555 0.80 -0.1
6,354,433 - PFLU_RS28555 0.80 +0.9
6,354,433 - PFLU_RS28555 0.80 +1.4
6,354,433 - PFLU_RS28555 0.80 +0.3
6,354,499 + PFLU_RS28555 0.86 +0.8
6,354,624 - -0.2
6,354,643 + -1.9
6,354,644 - +0.6
6,354,718 + -1.6
6,354,765 + +1.3
6,354,802 + -0.7
6,354,812 + -0.6
6,354,812 + +0.8
6,354,813 - -0.5
6,354,825 + +1.0
6,354,825 + -0.4
6,354,826 - -0.2
6,354,911 + -2.1
6,354,911 + -0.4
6,354,912 - +0.9
6,354,912 - -0.7
6,354,912 - +0.8
6,355,036 + PFLU_RS28560 0.11 +1.0
6,355,036 + PFLU_RS28560 0.11 -0.7
6,355,099 + PFLU_RS28560 0.15 -1.4
6,355,100 - PFLU_RS28560 0.15 +0.3
6,355,103 + PFLU_RS28560 0.16 +0.7
6,355,103 + PFLU_RS28560 0.16 +0.2
6,355,103 + PFLU_RS28560 0.16 -0.2
6,355,103 + PFLU_RS28560 0.16 +0.3
6,355,103 + PFLU_RS28560 0.16 +0.9
6,355,103 + PFLU_RS28560 0.16 +0.2
6,355,103 + PFLU_RS28560 0.16 -1.0
6,355,103 + PFLU_RS28560 0.16 -0.1
6,355,104 - PFLU_RS28560 0.16 -0.4
6,355,104 - PFLU_RS28560 0.16 +0.9
6,355,104 - PFLU_RS28560 0.16 -0.8
6,355,104 - PFLU_RS28560 0.16 +1.5
6,355,104 - PFLU_RS28560 0.16 +0.1
6,355,104 - PFLU_RS28560 0.16 +0.8
6,355,104 - PFLU_RS28560 0.16 -0.3
6,355,104 - PFLU_RS28560 0.16 -0.7
6,355,104 - PFLU_RS28560 0.16 +1.8
6,355,137 - PFLU_RS28560 0.18 -0.7
6,355,345 + PFLU_RS28560 0.33 +0.4
6,355,345 + PFLU_RS28560 0.33 -0.5
6,355,346 - PFLU_RS28560 0.33 -1.5
6,355,600 + PFLU_RS28560 0.51 -1.1
6,355,687 + PFLU_RS28560 0.58 -1.4
6,355,687 + PFLU_RS28560 0.58 -1.1
6,355,688 - PFLU_RS28560 0.58 +0.8
6,355,688 - PFLU_RS28560 0.58 -1.1
6,355,688 - PFLU_RS28560 0.58 +0.9
6,356,084 + PFLU_RS28560 0.86 +0.3
6,356,084 + PFLU_RS28560 0.86 +0.9
6,356,085 - PFLU_RS28560 0.86 +0.4
6,356,278 + +0.3
6,356,896 + -0.2
6,357,000 + +0.7
6,357,001 - +0.1

Or see this region's nucleotide sequence