Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS08850

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS08840 and PFLU_RS08845 are separated by 31 nucleotidesPFLU_RS08845 and PFLU_RS08850 are separated by 34 nucleotidesPFLU_RS08850 and PFLU_RS08855 overlap by 11 nucleotides PFLU_RS08840: PFLU_RS08840 - ion transporter, at 1,959,704 to 1,960,528 _RS08840 PFLU_RS08845: PFLU_RS08845 - urea transporter, at 1,960,560 to 1,961,435 _RS08845 PFLU_RS08850: PFLU_RS08850 - pyruvate kinase, at 1,961,470 to 1,962,885 _RS08850 PFLU_RS08855: PFLU_RS08855 - glycerate kinase, at 1,962,875 to 1,964,155 _RS08855 Position (kb) 1961 1962 1963Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1960.494 kb on + strandat 1960.494 kb on + strandat 1960.495 kb on - strandat 1960.495 kb on - strandat 1960.528 kb on + strandat 1960.528 kb on + strandat 1960.528 kb on + strandat 1960.528 kb on + strandat 1960.529 kb on - strandat 1960.529 kb on - strandat 1960.529 kb on - strandat 1960.529 kb on - strandat 1960.561 kb on + strandat 1960.562 kb on - strandat 1960.775 kb on + strand, within PFLU_RS08845at 1960.777 kb on + strand, within PFLU_RS08845at 1960.777 kb on + strand, within PFLU_RS08845at 1960.778 kb on - strand, within PFLU_RS08845at 1960.864 kb on - strand, within PFLU_RS08845at 1961.031 kb on + strand, within PFLU_RS08845at 1961.032 kb on - strand, within PFLU_RS08845at 1961.061 kb on - strand, within PFLU_RS08845at 1961.062 kb on + strand, within PFLU_RS08845at 1961.062 kb on + strand, within PFLU_RS08845at 1961.062 kb on + strand, within PFLU_RS08845at 1961.063 kb on - strand, within PFLU_RS08845at 1961.063 kb on - strand, within PFLU_RS08845at 1961.063 kb on - strand, within PFLU_RS08845at 1961.063 kb on - strand, within PFLU_RS08845at 1961.212 kb on + strand, within PFLU_RS08845at 1961.212 kb on + strand, within PFLU_RS08845at 1961.212 kb on + strand, within PFLU_RS08845at 1961.212 kb on + strand, within PFLU_RS08845at 1961.212 kb on + strand, within PFLU_RS08845at 1961.212 kb on + strand, within PFLU_RS08845at 1961.212 kb on + strand, within PFLU_RS08845at 1961.212 kb on + strand, within PFLU_RS08845at 1961.212 kb on + strand, within PFLU_RS08845at 1961.212 kb on + strand, within PFLU_RS08845at 1961.212 kb on + strand, within PFLU_RS08845at 1961.212 kb on + strand, within PFLU_RS08845at 1961.212 kb on + strand, within PFLU_RS08845at 1961.213 kb on - strand, within PFLU_RS08845at 1961.213 kb on - strand, within PFLU_RS08845at 1961.213 kb on - strand, within PFLU_RS08845at 1961.213 kb on - strand, within PFLU_RS08845at 1961.213 kb on - strand, within PFLU_RS08845at 1961.213 kb on - strand, within PFLU_RS08845at 1961.213 kb on - strand, within PFLU_RS08845at 1961.213 kb on - strand, within PFLU_RS08845at 1961.213 kb on - strand, within PFLU_RS08845at 1961.213 kb on - strand, within PFLU_RS08845at 1961.213 kb on - strand, within PFLU_RS08845at 1961.213 kb on - strand, within PFLU_RS08845at 1961.213 kb on - strand, within PFLU_RS08845at 1961.213 kb on - strand, within PFLU_RS08845at 1961.213 kb on - strand, within PFLU_RS08845at 1961.213 kb on - strand, within PFLU_RS08845at 1961.213 kb on - strand, within PFLU_RS08845at 1961.213 kb on - strand, within PFLU_RS08845at 1961.213 kb on - strand, within PFLU_RS08845at 1961.216 kb on + strand, within PFLU_RS08845at 1961.216 kb on + strand, within PFLU_RS08845at 1961.216 kb on + strand, within PFLU_RS08845at 1961.216 kb on + strand, within PFLU_RS08845at 1961.216 kb on + strand, within PFLU_RS08845at 1961.216 kb on + strand, within PFLU_RS08845at 1961.216 kb on + strand, within PFLU_RS08845at 1961.216 kb on + strand, within PFLU_RS08845at 1961.216 kb on + strand, within PFLU_RS08845at 1961.216 kb on + strand, within PFLU_RS08845at 1961.216 kb on + strand, within PFLU_RS08845at 1961.216 kb on + strand, within PFLU_RS08845at 1961.216 kb on + strand, within PFLU_RS08845at 1961.216 kb on + strand, within PFLU_RS08845at 1961.217 kb on - strand, within PFLU_RS08845at 1961.217 kb on - strand, within PFLU_RS08845at 1961.217 kb on - strand, within PFLU_RS08845at 1961.217 kb on - strand, within PFLU_RS08845at 1961.217 kb on - strand, within PFLU_RS08845at 1961.217 kb on - strand, within PFLU_RS08845at 1961.217 kb on - strand, within PFLU_RS08845at 1961.217 kb on - strand, within PFLU_RS08845at 1961.217 kb on - strand, within PFLU_RS08845at 1961.217 kb on - strand, within PFLU_RS08845at 1961.217 kb on - strand, within PFLU_RS08845at 1961.217 kb on - strand, within PFLU_RS08845at 1961.217 kb on - strand, within PFLU_RS08845at 1961.217 kb on - strand, within PFLU_RS08845at 1961.217 kb on - strand, within PFLU_RS08845at 1961.217 kb on - strand, within PFLU_RS08845at 1961.218 kb on + strand, within PFLU_RS08845at 1961.218 kb on + strand, within PFLU_RS08845at 1961.218 kb on + strand, within PFLU_RS08845at 1961.219 kb on - strand, within PFLU_RS08845at 1961.219 kb on - strand, within PFLU_RS08845at 1961.219 kb on - strand, within PFLU_RS08845at 1961.449 kb on - strandat 1961.471 kb on + strandat 1961.471 kb on + strandat 1961.471 kb on + strandat 1961.471 kb on + strandat 1961.471 kb on + strandat 1961.471 kb on + strandat 1961.471 kb on + strandat 1961.472 kb on - strandat 1961.472 kb on - strandat 1961.472 kb on - strandat 1961.476 kb on + strandat 1961.476 kb on + strandat 1961.476 kb on + strandat 1961.477 kb on - strandat 1961.759 kb on + strand, within PFLU_RS08850at 1961.759 kb on + strand, within PFLU_RS08850at 1961.760 kb on - strand, within PFLU_RS08850at 1961.760 kb on - strand, within PFLU_RS08850at 1961.760 kb on - strand, within PFLU_RS08850at 1961.771 kb on - strand, within PFLU_RS08850at 1961.873 kb on + strand, within PFLU_RS08850at 1961.874 kb on - strand, within PFLU_RS08850at 1961.936 kb on + strand, within PFLU_RS08850at 1962.010 kb on - strand, within PFLU_RS08850at 1962.498 kb on + strand, within PFLU_RS08850at 1962.622 kb on + strand, within PFLU_RS08850at 1962.790 kb on - strandat 1962.790 kb on - strandat 1962.985 kb on - strandat 1963.044 kb on + strand, within PFLU_RS08855at 1963.119 kb on + strand, within PFLU_RS08855at 1963.120 kb on - strand, within PFLU_RS08855at 1963.614 kb on + strand, within PFLU_RS08855at 1963.614 kb on + strand, within PFLU_RS08855at 1963.614 kb on + strand, within PFLU_RS08855at 1963.614 kb on + strand, within PFLU_RS08855at 1963.614 kb on + strand, within PFLU_RS08855at 1963.614 kb on + strand, within PFLU_RS08855at 1963.615 kb on - strand, within PFLU_RS08855at 1963.615 kb on - strand, within PFLU_RS08855at 1963.615 kb on - strand, within PFLU_RS08855at 1963.615 kb on - strand, within PFLU_RS08855at 1963.615 kb on - strand, within PFLU_RS08855at 1963.615 kb on - strand, within PFLU_RS08855at 1963.615 kb on - strand, within PFLU_RS08855at 1963.620 kb on + strand, within PFLU_RS08855at 1963.620 kb on + strand, within PFLU_RS08855at 1963.620 kb on + strand, within PFLU_RS08855at 1963.620 kb on + strand, within PFLU_RS08855at 1963.620 kb on + strand, within PFLU_RS08855at 1963.620 kb on + strand, within PFLU_RS08855at 1963.620 kb on + strand, within PFLU_RS08855at 1963.620 kb on + strand, within PFLU_RS08855at 1963.620 kb on + strand, within PFLU_RS08855at 1963.620 kb on + strand, within PFLU_RS08855at 1963.620 kb on + strand, within PFLU_RS08855at 1963.621 kb on - strand, within PFLU_RS08855at 1963.621 kb on - strand, within PFLU_RS08855at 1963.621 kb on - strand, within PFLU_RS08855at 1963.621 kb on - strand, within PFLU_RS08855at 1963.621 kb on - strand, within PFLU_RS08855

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,960,494 + +0.3
1,960,494 + +0.0
1,960,495 - -1.2
1,960,495 - +0.5
1,960,528 + +1.2
1,960,528 + -0.2
1,960,528 + +2.8
1,960,528 + +0.1
1,960,529 - +0.4
1,960,529 - +0.6
1,960,529 - +0.0
1,960,529 - +0.3
1,960,561 + +1.3
1,960,562 - -0.1
1,960,775 + PFLU_RS08845 0.25 -0.3
1,960,777 + PFLU_RS08845 0.25 +0.5
1,960,777 + PFLU_RS08845 0.25 -0.5
1,960,778 - PFLU_RS08845 0.25 +0.5
1,960,864 - PFLU_RS08845 0.35 -2.1
1,961,031 + PFLU_RS08845 0.54 -0.0
1,961,032 - PFLU_RS08845 0.54 +0.5
1,961,061 - PFLU_RS08845 0.57 -0.0
1,961,062 + PFLU_RS08845 0.57 +0.0
1,961,062 + PFLU_RS08845 0.57 +0.6
1,961,062 + PFLU_RS08845 0.57 +0.4
1,961,063 - PFLU_RS08845 0.57 -0.1
1,961,063 - PFLU_RS08845 0.57 +0.5
1,961,063 - PFLU_RS08845 0.57 +0.2
1,961,063 - PFLU_RS08845 0.57 +0.4
1,961,212 + PFLU_RS08845 0.74 -0.7
1,961,212 + PFLU_RS08845 0.74 +0.0
1,961,212 + PFLU_RS08845 0.74 +1.2
1,961,212 + PFLU_RS08845 0.74 -0.8
1,961,212 + PFLU_RS08845 0.74 -0.2
1,961,212 + PFLU_RS08845 0.74 +0.1
1,961,212 + PFLU_RS08845 0.74 -1.9
1,961,212 + PFLU_RS08845 0.74 -0.4
1,961,212 + PFLU_RS08845 0.74 +1.3
1,961,212 + PFLU_RS08845 0.74 +0.1
1,961,212 + PFLU_RS08845 0.74 +0.0
1,961,212 + PFLU_RS08845 0.74 -0.9
1,961,212 + PFLU_RS08845 0.74 +0.6
1,961,213 - PFLU_RS08845 0.75 +0.4
1,961,213 - PFLU_RS08845 0.75 -1.2
1,961,213 - PFLU_RS08845 0.75 +0.9
1,961,213 - PFLU_RS08845 0.75 +0.2
1,961,213 - PFLU_RS08845 0.75 +0.9
1,961,213 - PFLU_RS08845 0.75 -0.3
1,961,213 - PFLU_RS08845 0.75 +1.5
1,961,213 - PFLU_RS08845 0.75 -1.1
1,961,213 - PFLU_RS08845 0.75 +0.5
1,961,213 - PFLU_RS08845 0.75 +0.9
1,961,213 - PFLU_RS08845 0.75 +0.9
1,961,213 - PFLU_RS08845 0.75 -1.0
1,961,213 - PFLU_RS08845 0.75 -1.7
1,961,213 - PFLU_RS08845 0.75 -1.3
1,961,213 - PFLU_RS08845 0.75 -2.2
1,961,213 - PFLU_RS08845 0.75 +0.3
1,961,213 - PFLU_RS08845 0.75 +0.6
1,961,213 - PFLU_RS08845 0.75 -0.9
1,961,213 - PFLU_RS08845 0.75 +0.4
1,961,216 + PFLU_RS08845 0.75 +0.1
1,961,216 + PFLU_RS08845 0.75 +1.2
1,961,216 + PFLU_RS08845 0.75 +0.1
1,961,216 + PFLU_RS08845 0.75 -0.3
1,961,216 + PFLU_RS08845 0.75 +0.7
1,961,216 + PFLU_RS08845 0.75 +0.3
1,961,216 + PFLU_RS08845 0.75 -1.6
1,961,216 + PFLU_RS08845 0.75 -0.5
1,961,216 + PFLU_RS08845 0.75 -0.8
1,961,216 + PFLU_RS08845 0.75 -0.1
1,961,216 + PFLU_RS08845 0.75 +0.7
1,961,216 + PFLU_RS08845 0.75 -0.5
1,961,216 + PFLU_RS08845 0.75 +1.0
1,961,216 + PFLU_RS08845 0.75 +0.8
1,961,217 - PFLU_RS08845 0.75 -0.7
1,961,217 - PFLU_RS08845 0.75 +0.6
1,961,217 - PFLU_RS08845 0.75 +0.3
1,961,217 - PFLU_RS08845 0.75 +0.2
1,961,217 - PFLU_RS08845 0.75 +0.9
1,961,217 - PFLU_RS08845 0.75 +1.3
1,961,217 - PFLU_RS08845 0.75 +0.7
1,961,217 - PFLU_RS08845 0.75 -0.7
1,961,217 - PFLU_RS08845 0.75 +0.4
1,961,217 - PFLU_RS08845 0.75 +1.2
1,961,217 - PFLU_RS08845 0.75 +0.9
1,961,217 - PFLU_RS08845 0.75 +0.3
1,961,217 - PFLU_RS08845 0.75 -1.4
1,961,217 - PFLU_RS08845 0.75 -2.4
1,961,217 - PFLU_RS08845 0.75 +0.3
1,961,217 - PFLU_RS08845 0.75 -0.1
1,961,218 + PFLU_RS08845 0.75 +0.6
1,961,218 + PFLU_RS08845 0.75 +1.1
1,961,218 + PFLU_RS08845 0.75 -0.4
1,961,219 - PFLU_RS08845 0.75 -1.5
1,961,219 - PFLU_RS08845 0.75 -2.3
1,961,219 - PFLU_RS08845 0.75 +0.4
1,961,449 - +0.5
1,961,471 + -0.2
1,961,471 + -1.0
1,961,471 + +0.7
1,961,471 + +0.3
1,961,471 + +0.7
1,961,471 + +0.2
1,961,471 + -0.2
1,961,472 - -1.1
1,961,472 - -0.1
1,961,472 - -0.4
1,961,476 + +0.9
1,961,476 + +0.8
1,961,476 + +0.1
1,961,477 - +0.8
1,961,759 + PFLU_RS08850 0.20 +1.4
1,961,759 + PFLU_RS08850 0.20 -0.5
1,961,760 - PFLU_RS08850 0.20 +1.2
1,961,760 - PFLU_RS08850 0.20 +0.4
1,961,760 - PFLU_RS08850 0.20 +0.0
1,961,771 - PFLU_RS08850 0.21 +0.9
1,961,873 + PFLU_RS08850 0.28 +0.4
1,961,874 - PFLU_RS08850 0.29 -0.2
1,961,936 + PFLU_RS08850 0.33 +0.2
1,962,010 - PFLU_RS08850 0.38 +0.8
1,962,498 + PFLU_RS08850 0.73 -0.6
1,962,622 + PFLU_RS08850 0.81 +1.1
1,962,790 - +0.6
1,962,790 - -0.3
1,962,985 - -0.3
1,963,044 + PFLU_RS08855 0.13 -0.3
1,963,119 + PFLU_RS08855 0.19 -0.7
1,963,120 - PFLU_RS08855 0.19 -0.1
1,963,614 + PFLU_RS08855 0.58 +0.6
1,963,614 + PFLU_RS08855 0.58 -2.2
1,963,614 + PFLU_RS08855 0.58 +0.5
1,963,614 + PFLU_RS08855 0.58 +0.4
1,963,614 + PFLU_RS08855 0.58 +1.2
1,963,614 + PFLU_RS08855 0.58 -1.6
1,963,615 - PFLU_RS08855 0.58 +0.3
1,963,615 - PFLU_RS08855 0.58 +0.9
1,963,615 - PFLU_RS08855 0.58 -0.6
1,963,615 - PFLU_RS08855 0.58 -0.7
1,963,615 - PFLU_RS08855 0.58 -0.8
1,963,615 - PFLU_RS08855 0.58 +0.0
1,963,615 - PFLU_RS08855 0.58 +0.3
1,963,620 + PFLU_RS08855 0.58 -0.7
1,963,620 + PFLU_RS08855 0.58 -0.7
1,963,620 + PFLU_RS08855 0.58 -1.5
1,963,620 + PFLU_RS08855 0.58 +1.3
1,963,620 + PFLU_RS08855 0.58 -0.9
1,963,620 + PFLU_RS08855 0.58 -0.5
1,963,620 + PFLU_RS08855 0.58 +0.2
1,963,620 + PFLU_RS08855 0.58 -2.0
1,963,620 + PFLU_RS08855 0.58 +0.8
1,963,620 + PFLU_RS08855 0.58 +0.7
1,963,620 + PFLU_RS08855 0.58 -0.1
1,963,621 - PFLU_RS08855 0.58 -0.4
1,963,621 - PFLU_RS08855 0.58 -1.5
1,963,621 - PFLU_RS08855 0.58 -0.4
1,963,621 - PFLU_RS08855 0.58 +0.6
1,963,621 - PFLU_RS08855 0.58 -1.0

Or see this region's nucleotide sequence