Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS06045

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS06040 and PFLU_RS06045 overlap by 4 nucleotidesPFLU_RS06045 and PFLU_RS06050 overlap by 4 nucleotides PFLU_RS06040: PFLU_RS06040 - chemotaxis protein CheR, at 1,354,401 to 1,355,660 _RS06040 PFLU_RS06045: PFLU_RS06045 - purine-binding chemotaxis protein CheW, at 1,355,657 to 1,356,355 _RS06045 PFLU_RS06050: PFLU_RS06050 - hybrid sensor histidine kinase/response regulator, at 1,356,352 to 1,358,619 _RS06050 Position (kb) 1355 1356 1357Strain fitness (log2 ratio) -2 -1 0 1 2at 1354.697 kb on + strand, within PFLU_RS06040at 1354.735 kb on - strand, within PFLU_RS06040at 1354.735 kb on - strand, within PFLU_RS06040at 1354.790 kb on - strand, within PFLU_RS06040at 1354.790 kb on - strand, within PFLU_RS06040at 1354.790 kb on - strand, within PFLU_RS06040at 1354.903 kb on - strand, within PFLU_RS06040at 1355.002 kb on - strand, within PFLU_RS06040at 1355.035 kb on - strand, within PFLU_RS06040at 1355.222 kb on + strand, within PFLU_RS06040at 1355.223 kb on - strand, within PFLU_RS06040at 1355.223 kb on - strand, within PFLU_RS06040at 1355.223 kb on - strand, within PFLU_RS06040at 1355.273 kb on + strand, within PFLU_RS06040at 1355.274 kb on - strand, within PFLU_RS06040at 1355.274 kb on - strand, within PFLU_RS06040at 1355.312 kb on - strand, within PFLU_RS06040at 1355.325 kb on - strand, within PFLU_RS06040at 1355.415 kb on + strand, within PFLU_RS06040at 1355.415 kb on + strand, within PFLU_RS06040at 1355.416 kb on - strand, within PFLU_RS06040at 1355.416 kb on - strand, within PFLU_RS06040at 1355.416 kb on - strand, within PFLU_RS06040at 1355.416 kb on - strand, within PFLU_RS06040at 1355.416 kb on - strand, within PFLU_RS06040at 1355.416 kb on - strand, within PFLU_RS06040at 1355.452 kb on - strand, within PFLU_RS06040at 1355.505 kb on + strand, within PFLU_RS06040at 1355.505 kb on + strand, within PFLU_RS06040at 1355.506 kb on - strand, within PFLU_RS06040at 1355.506 kb on - strand, within PFLU_RS06040at 1355.523 kb on + strand, within PFLU_RS06040at 1355.523 kb on + strand, within PFLU_RS06040at 1355.523 kb on + strand, within PFLU_RS06040at 1355.523 kb on + strand, within PFLU_RS06040at 1355.523 kb on + strand, within PFLU_RS06040at 1355.524 kb on - strand, within PFLU_RS06040at 1355.524 kb on - strand, within PFLU_RS06040at 1355.524 kb on - strand, within PFLU_RS06040at 1355.524 kb on - strand, within PFLU_RS06040at 1355.524 kb on - strand, within PFLU_RS06040at 1355.662 kb on + strandat 1355.662 kb on + strandat 1355.662 kb on + strandat 1355.662 kb on + strandat 1355.663 kb on - strandat 1355.663 kb on - strandat 1355.759 kb on - strand, within PFLU_RS06045at 1355.773 kb on - strand, within PFLU_RS06045at 1355.810 kb on + strand, within PFLU_RS06045at 1355.811 kb on - strand, within PFLU_RS06045at 1355.953 kb on + strand, within PFLU_RS06045at 1355.953 kb on + strand, within PFLU_RS06045at 1356.276 kb on + strand, within PFLU_RS06045at 1356.276 kb on + strand, within PFLU_RS06045at 1356.276 kb on + strand, within PFLU_RS06045at 1356.276 kb on + strand, within PFLU_RS06045at 1356.276 kb on + strand, within PFLU_RS06045at 1356.276 kb on + strand, within PFLU_RS06045at 1356.277 kb on - strand, within PFLU_RS06045at 1356.277 kb on - strand, within PFLU_RS06045at 1356.277 kb on - strand, within PFLU_RS06045at 1356.277 kb on - strand, within PFLU_RS06045at 1356.277 kb on - strand, within PFLU_RS06045at 1356.605 kb on - strand, within PFLU_RS06050at 1356.605 kb on - strand, within PFLU_RS06050at 1356.605 kb on - strand, within PFLU_RS06050at 1356.605 kb on - strand, within PFLU_RS06050at 1356.605 kb on - strand, within PFLU_RS06050at 1356.621 kb on + strand, within PFLU_RS06050at 1356.621 kb on + strand, within PFLU_RS06050at 1356.621 kb on + strand, within PFLU_RS06050at 1356.621 kb on + strand, within PFLU_RS06050at 1356.622 kb on - strand, within PFLU_RS06050at 1356.622 kb on - strand, within PFLU_RS06050at 1356.706 kb on + strand, within PFLU_RS06050at 1356.706 kb on + strand, within PFLU_RS06050at 1356.707 kb on - strand, within PFLU_RS06050at 1356.707 kb on - strand, within PFLU_RS06050at 1356.707 kb on - strand, within PFLU_RS06050at 1356.707 kb on - strand, within PFLU_RS06050at 1356.882 kb on - strand, within PFLU_RS06050at 1356.965 kb on - strand, within PFLU_RS06050at 1357.186 kb on + strand, within PFLU_RS06050at 1357.186 kb on + strand, within PFLU_RS06050at 1357.186 kb on + strand, within PFLU_RS06050at 1357.186 kb on + strand, within PFLU_RS06050at 1357.186 kb on + strand, within PFLU_RS06050at 1357.186 kb on + strand, within PFLU_RS06050at 1357.186 kb on + strand, within PFLU_RS06050at 1357.186 kb on + strand, within PFLU_RS06050at 1357.186 kb on + strand, within PFLU_RS06050at 1357.186 kb on + strand, within PFLU_RS06050at 1357.186 kb on + strand, within PFLU_RS06050at 1357.186 kb on + strand, within PFLU_RS06050at 1357.186 kb on + strand, within PFLU_RS06050at 1357.186 kb on + strand, within PFLU_RS06050at 1357.186 kb on + strand, within PFLU_RS06050at 1357.187 kb on - strand, within PFLU_RS06050at 1357.187 kb on - strand, within PFLU_RS06050at 1357.187 kb on - strand, within PFLU_RS06050at 1357.187 kb on - strand, within PFLU_RS06050at 1357.187 kb on - strand, within PFLU_RS06050at 1357.187 kb on - strand, within PFLU_RS06050at 1357.187 kb on - strand, within PFLU_RS06050at 1357.187 kb on - strand, within PFLU_RS06050at 1357.187 kb on - strand, within PFLU_RS06050at 1357.187 kb on - strand, within PFLU_RS06050at 1357.187 kb on - strand, within PFLU_RS06050at 1357.187 kb on - strand, within PFLU_RS06050at 1357.187 kb on - strand, within PFLU_RS06050at 1357.187 kb on - strand, within PFLU_RS06050at 1357.187 kb on - strand, within PFLU_RS06050at 1357.187 kb on - strand, within PFLU_RS06050at 1357.229 kb on + strand, within PFLU_RS06050at 1357.229 kb on + strand, within PFLU_RS06050at 1357.229 kb on + strand, within PFLU_RS06050at 1357.229 kb on + strand, within PFLU_RS06050at 1357.229 kb on + strand, within PFLU_RS06050at 1357.229 kb on + strand, within PFLU_RS06050at 1357.230 kb on - strand, within PFLU_RS06050at 1357.230 kb on - strand, within PFLU_RS06050at 1357.230 kb on - strand, within PFLU_RS06050at 1357.230 kb on - strand, within PFLU_RS06050at 1357.230 kb on - strand, within PFLU_RS06050at 1357.331 kb on + strand, within PFLU_RS06050at 1357.332 kb on - strand, within PFLU_RS06050at 1357.332 kb on - strand, within PFLU_RS06050

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,354,697 + PFLU_RS06040 0.23 -1.3
1,354,735 - PFLU_RS06040 0.27 +1.4
1,354,735 - PFLU_RS06040 0.27 -0.6
1,354,790 - PFLU_RS06040 0.31 +1.1
1,354,790 - PFLU_RS06040 0.31 +1.5
1,354,790 - PFLU_RS06040 0.31 +0.9
1,354,903 - PFLU_RS06040 0.40 +1.6
1,355,002 - PFLU_RS06040 0.48 -1.0
1,355,035 - PFLU_RS06040 0.50 -0.2
1,355,222 + PFLU_RS06040 0.65 -1.4
1,355,223 - PFLU_RS06040 0.65 -0.6
1,355,223 - PFLU_RS06040 0.65 -0.5
1,355,223 - PFLU_RS06040 0.65 +1.4
1,355,273 + PFLU_RS06040 0.69 +0.2
1,355,274 - PFLU_RS06040 0.69 -0.1
1,355,274 - PFLU_RS06040 0.69 +1.7
1,355,312 - PFLU_RS06040 0.72 +1.1
1,355,325 - PFLU_RS06040 0.73 -0.8
1,355,415 + PFLU_RS06040 0.80 +0.0
1,355,415 + PFLU_RS06040 0.80 +0.3
1,355,416 - PFLU_RS06040 0.81 +0.3
1,355,416 - PFLU_RS06040 0.81 +0.7
1,355,416 - PFLU_RS06040 0.81 -0.9
1,355,416 - PFLU_RS06040 0.81 -0.1
1,355,416 - PFLU_RS06040 0.81 -0.6
1,355,416 - PFLU_RS06040 0.81 +1.5
1,355,452 - PFLU_RS06040 0.83 -1.1
1,355,505 + PFLU_RS06040 0.88 +0.7
1,355,505 + PFLU_RS06040 0.88 +0.9
1,355,506 - PFLU_RS06040 0.88 -0.6
1,355,506 - PFLU_RS06040 0.88 -0.8
1,355,523 + PFLU_RS06040 0.89 +0.4
1,355,523 + PFLU_RS06040 0.89 +0.2
1,355,523 + PFLU_RS06040 0.89 -0.7
1,355,523 + PFLU_RS06040 0.89 -0.1
1,355,523 + PFLU_RS06040 0.89 +0.5
1,355,524 - PFLU_RS06040 0.89 -1.0
1,355,524 - PFLU_RS06040 0.89 +0.2
1,355,524 - PFLU_RS06040 0.89 +1.4
1,355,524 - PFLU_RS06040 0.89 -2.4
1,355,524 - PFLU_RS06040 0.89 +0.5
1,355,662 + -0.4
1,355,662 + +1.6
1,355,662 + -0.5
1,355,662 + +0.7
1,355,663 - +0.3
1,355,663 - +0.3
1,355,759 - PFLU_RS06045 0.15 +0.6
1,355,773 - PFLU_RS06045 0.17 +0.7
1,355,810 + PFLU_RS06045 0.22 +1.3
1,355,811 - PFLU_RS06045 0.22 -0.1
1,355,953 + PFLU_RS06045 0.42 +0.4
1,355,953 + PFLU_RS06045 0.42 +0.0
1,356,276 + PFLU_RS06045 0.89 +0.8
1,356,276 + PFLU_RS06045 0.89 -0.4
1,356,276 + PFLU_RS06045 0.89 +1.5
1,356,276 + PFLU_RS06045 0.89 +0.7
1,356,276 + PFLU_RS06045 0.89 +0.7
1,356,276 + PFLU_RS06045 0.89 +0.5
1,356,277 - PFLU_RS06045 0.89 -1.4
1,356,277 - PFLU_RS06045 0.89 +0.3
1,356,277 - PFLU_RS06045 0.89 -2.1
1,356,277 - PFLU_RS06045 0.89 +0.6
1,356,277 - PFLU_RS06045 0.89 +0.3
1,356,605 - PFLU_RS06050 0.11 +0.3
1,356,605 - PFLU_RS06050 0.11 +0.6
1,356,605 - PFLU_RS06050 0.11 -2.3
1,356,605 - PFLU_RS06050 0.11 +0.5
1,356,605 - PFLU_RS06050 0.11 -0.3
1,356,621 + PFLU_RS06050 0.12 +1.2
1,356,621 + PFLU_RS06050 0.12 -1.5
1,356,621 + PFLU_RS06050 0.12 -1.1
1,356,621 + PFLU_RS06050 0.12 +0.1
1,356,622 - PFLU_RS06050 0.12 +0.3
1,356,622 - PFLU_RS06050 0.12 -1.7
1,356,706 + PFLU_RS06050 0.16 -2.1
1,356,706 + PFLU_RS06050 0.16 -1.2
1,356,707 - PFLU_RS06050 0.16 +2.4
1,356,707 - PFLU_RS06050 0.16 +0.2
1,356,707 - PFLU_RS06050 0.16 +1.4
1,356,707 - PFLU_RS06050 0.16 -1.3
1,356,882 - PFLU_RS06050 0.23 +0.2
1,356,965 - PFLU_RS06050 0.27 +1.1
1,357,186 + PFLU_RS06050 0.37 +1.1
1,357,186 + PFLU_RS06050 0.37 +0.1
1,357,186 + PFLU_RS06050 0.37 -0.1
1,357,186 + PFLU_RS06050 0.37 -0.7
1,357,186 + PFLU_RS06050 0.37 +1.3
1,357,186 + PFLU_RS06050 0.37 -0.6
1,357,186 + PFLU_RS06050 0.37 -0.3
1,357,186 + PFLU_RS06050 0.37 -0.4
1,357,186 + PFLU_RS06050 0.37 -1.9
1,357,186 + PFLU_RS06050 0.37 -0.7
1,357,186 + PFLU_RS06050 0.37 -0.5
1,357,186 + PFLU_RS06050 0.37 +0.4
1,357,186 + PFLU_RS06050 0.37 -0.7
1,357,186 + PFLU_RS06050 0.37 -1.0
1,357,186 + PFLU_RS06050 0.37 +0.1
1,357,187 - PFLU_RS06050 0.37 -0.3
1,357,187 - PFLU_RS06050 0.37 +1.7
1,357,187 - PFLU_RS06050 0.37 -1.0
1,357,187 - PFLU_RS06050 0.37 +1.4
1,357,187 - PFLU_RS06050 0.37 +0.5
1,357,187 - PFLU_RS06050 0.37 +0.8
1,357,187 - PFLU_RS06050 0.37 -0.5
1,357,187 - PFLU_RS06050 0.37 -0.3
1,357,187 - PFLU_RS06050 0.37 -0.9
1,357,187 - PFLU_RS06050 0.37 +0.4
1,357,187 - PFLU_RS06050 0.37 +0.7
1,357,187 - PFLU_RS06050 0.37 +0.6
1,357,187 - PFLU_RS06050 0.37 +0.1
1,357,187 - PFLU_RS06050 0.37 -2.6
1,357,187 - PFLU_RS06050 0.37 +0.2
1,357,187 - PFLU_RS06050 0.37 +0.9
1,357,229 + PFLU_RS06050 0.39 -1.9
1,357,229 + PFLU_RS06050 0.39 +1.0
1,357,229 + PFLU_RS06050 0.39 +0.1
1,357,229 + PFLU_RS06050 0.39 -0.8
1,357,229 + PFLU_RS06050 0.39 -0.0
1,357,229 + PFLU_RS06050 0.39 +0.3
1,357,230 - PFLU_RS06050 0.39 +0.0
1,357,230 - PFLU_RS06050 0.39 +0.9
1,357,230 - PFLU_RS06050 0.39 +0.2
1,357,230 - PFLU_RS06050 0.39 +1.2
1,357,230 - PFLU_RS06050 0.39 +0.4
1,357,331 + PFLU_RS06050 0.43 -1.0
1,357,332 - PFLU_RS06050 0.43 -1.5
1,357,332 - PFLU_RS06050 0.43 +0.2

Or see this region's nucleotide sequence