Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS05530

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS05525 and PFLU_RS05530 overlap by 4 nucleotidesPFLU_RS05530 and PFLU_RS05535 are separated by 5 nucleotidesPFLU_RS05535 and PFLU_RS05540 are separated by 51 nucleotides PFLU_RS05525: PFLU_RS05525 - response regulator, at 1,245,018 to 1,246,343 _RS05525 PFLU_RS05530: PFLU_RS05530 - NUDIX domain-containing protein, at 1,246,340 to 1,246,756 _RS05530 PFLU_RS05535: PFLU_RS05535 - GNAT family N-acetyltransferase, at 1,246,762 to 1,247,268 _RS05535 PFLU_RS05540: PFLU_RS05540 - LysR family transcriptional regulator, at 1,247,320 to 1,248,237 _RS05540 Position (kb) 1246 1247Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1245.348 kb on + strand, within PFLU_RS05525at 1245.349 kb on - strand, within PFLU_RS05525at 1245.349 kb on - strand, within PFLU_RS05525at 1245.349 kb on - strand, within PFLU_RS05525at 1245.349 kb on - strand, within PFLU_RS05525at 1245.537 kb on + strand, within PFLU_RS05525at 1245.558 kb on + strand, within PFLU_RS05525at 1245.558 kb on + strand, within PFLU_RS05525at 1245.558 kb on + strand, within PFLU_RS05525at 1245.558 kb on + strand, within PFLU_RS05525at 1245.558 kb on + strand, within PFLU_RS05525at 1245.558 kb on + strand, within PFLU_RS05525at 1245.559 kb on - strand, within PFLU_RS05525at 1245.654 kb on + strand, within PFLU_RS05525at 1245.655 kb on - strand, within PFLU_RS05525at 1245.717 kb on + strand, within PFLU_RS05525at 1245.718 kb on - strand, within PFLU_RS05525at 1245.718 kb on - strand, within PFLU_RS05525at 1245.718 kb on - strand, within PFLU_RS05525at 1245.718 kb on - strand, within PFLU_RS05525at 1245.891 kb on + strand, within PFLU_RS05525at 1245.891 kb on + strand, within PFLU_RS05525at 1245.891 kb on + strand, within PFLU_RS05525at 1245.892 kb on - strand, within PFLU_RS05525at 1245.892 kb on - strand, within PFLU_RS05525at 1245.892 kb on - strand, within PFLU_RS05525at 1246.035 kb on + strand, within PFLU_RS05525at 1246.035 kb on + strand, within PFLU_RS05525at 1246.035 kb on + strand, within PFLU_RS05525at 1246.035 kb on + strand, within PFLU_RS05525at 1246.035 kb on + strand, within PFLU_RS05525at 1246.035 kb on + strand, within PFLU_RS05525at 1246.036 kb on - strand, within PFLU_RS05525at 1246.036 kb on - strand, within PFLU_RS05525at 1246.036 kb on - strand, within PFLU_RS05525at 1246.036 kb on - strand, within PFLU_RS05525at 1246.047 kb on + strand, within PFLU_RS05525at 1246.047 kb on + strand, within PFLU_RS05525at 1246.048 kb on - strand, within PFLU_RS05525at 1246.048 kb on - strand, within PFLU_RS05525at 1246.048 kb on - strand, within PFLU_RS05525at 1246.063 kb on - strand, within PFLU_RS05525at 1246.190 kb on + strand, within PFLU_RS05525at 1246.190 kb on + strand, within PFLU_RS05525at 1246.190 kb on + strand, within PFLU_RS05525at 1246.190 kb on + strand, within PFLU_RS05525at 1246.191 kb on - strand, within PFLU_RS05525at 1246.191 kb on - strand, within PFLU_RS05525at 1246.191 kb on - strand, within PFLU_RS05525at 1246.296 kb on + strandat 1246.308 kb on - strandat 1246.308 kb on - strandat 1246.316 kb on - strandat 1246.351 kb on + strandat 1246.351 kb on + strandat 1246.351 kb on + strandat 1246.351 kb on + strandat 1246.351 kb on + strandat 1246.352 kb on - strandat 1246.352 kb on - strandat 1246.352 kb on - strandat 1246.352 kb on - strandat 1246.354 kb on + strandat 1246.407 kb on + strand, within PFLU_RS05530at 1246.407 kb on + strand, within PFLU_RS05530at 1246.407 kb on + strand, within PFLU_RS05530at 1246.407 kb on + strand, within PFLU_RS05530at 1246.407 kb on + strand, within PFLU_RS05530at 1246.407 kb on + strand, within PFLU_RS05530at 1246.407 kb on + strand, within PFLU_RS05530at 1246.407 kb on + strand, within PFLU_RS05530at 1246.408 kb on - strand, within PFLU_RS05530at 1246.408 kb on - strand, within PFLU_RS05530at 1246.408 kb on - strand, within PFLU_RS05530at 1246.408 kb on - strand, within PFLU_RS05530at 1246.408 kb on - strand, within PFLU_RS05530at 1246.408 kb on - strand, within PFLU_RS05530at 1246.408 kb on - strand, within PFLU_RS05530at 1246.408 kb on - strand, within PFLU_RS05530at 1246.408 kb on - strand, within PFLU_RS05530at 1246.538 kb on + strand, within PFLU_RS05530at 1246.653 kb on + strand, within PFLU_RS05530at 1246.653 kb on + strand, within PFLU_RS05530at 1246.654 kb on - strand, within PFLU_RS05530at 1246.654 kb on - strand, within PFLU_RS05530at 1246.654 kb on - strand, within PFLU_RS05530at 1246.727 kb on + strandat 1246.761 kb on + strandat 1246.761 kb on + strandat 1246.761 kb on + strandat 1246.762 kb on - strandat 1246.976 kb on - strand, within PFLU_RS05535at 1247.019 kb on + strand, within PFLU_RS05535at 1247.019 kb on + strand, within PFLU_RS05535at 1247.019 kb on + strand, within PFLU_RS05535at 1247.020 kb on - strand, within PFLU_RS05535at 1247.020 kb on - strand, within PFLU_RS05535at 1247.020 kb on - strand, within PFLU_RS05535at 1247.020 kb on - strand, within PFLU_RS05535at 1247.023 kb on + strand, within PFLU_RS05535at 1247.023 kb on + strand, within PFLU_RS05535at 1247.023 kb on + strand, within PFLU_RS05535at 1247.023 kb on + strand, within PFLU_RS05535at 1247.023 kb on + strand, within PFLU_RS05535at 1247.023 kb on + strand, within PFLU_RS05535at 1247.023 kb on + strand, within PFLU_RS05535at 1247.023 kb on + strand, within PFLU_RS05535at 1247.023 kb on + strand, within PFLU_RS05535at 1247.023 kb on + strand, within PFLU_RS05535at 1247.023 kb on + strand, within PFLU_RS05535at 1247.023 kb on + strand, within PFLU_RS05535at 1247.023 kb on + strand, within PFLU_RS05535at 1247.023 kb on + strand, within PFLU_RS05535at 1247.023 kb on + strand, within PFLU_RS05535at 1247.023 kb on + strand, within PFLU_RS05535at 1247.023 kb on + strand, within PFLU_RS05535at 1247.023 kb on + strand, within PFLU_RS05535at 1247.023 kb on + strand, within PFLU_RS05535at 1247.024 kb on - strand, within PFLU_RS05535at 1247.024 kb on - strand, within PFLU_RS05535at 1247.024 kb on - strand, within PFLU_RS05535at 1247.024 kb on - strand, within PFLU_RS05535at 1247.024 kb on - strand, within PFLU_RS05535at 1247.024 kb on - strand, within PFLU_RS05535at 1247.024 kb on - strand, within PFLU_RS05535at 1247.024 kb on - strand, within PFLU_RS05535at 1247.024 kb on - strand, within PFLU_RS05535at 1247.024 kb on - strand, within PFLU_RS05535at 1247.024 kb on - strand, within PFLU_RS05535at 1247.162 kb on - strand, within PFLU_RS05535at 1247.162 kb on - strand, within PFLU_RS05535at 1247.185 kb on + strand, within PFLU_RS05535at 1247.185 kb on + strand, within PFLU_RS05535at 1247.186 kb on - strand, within PFLU_RS05535at 1247.186 kb on - strand, within PFLU_RS05535at 1247.224 kb on + strandat 1247.224 kb on + strandat 1247.224 kb on + strandat 1247.225 kb on - strandat 1247.225 kb on - strandat 1247.225 kb on - strandat 1247.269 kb on + strandat 1247.391 kb on + strandat 1247.391 kb on + strandat 1247.391 kb on + strandat 1247.391 kb on + strandat 1247.392 kb on - strandat 1247.392 kb on - strandat 1247.392 kb on - strandat 1247.393 kb on + strandat 1247.393 kb on + strandat 1247.393 kb on + strandat 1247.393 kb on + strandat 1247.393 kb on + strandat 1247.393 kb on + strandat 1247.394 kb on - strandat 1247.394 kb on - strandat 1247.394 kb on - strandat 1247.394 kb on - strandat 1247.429 kb on + strand, within PFLU_RS05540at 1247.429 kb on + strand, within PFLU_RS05540at 1247.429 kb on + strand, within PFLU_RS05540at 1247.429 kb on + strand, within PFLU_RS05540at 1247.430 kb on - strand, within PFLU_RS05540at 1247.430 kb on - strand, within PFLU_RS05540at 1247.430 kb on - strand, within PFLU_RS05540at 1247.492 kb on + strand, within PFLU_RS05540at 1247.492 kb on + strand, within PFLU_RS05540at 1247.492 kb on + strand, within PFLU_RS05540at 1247.492 kb on + strand, within PFLU_RS05540at 1247.493 kb on - strand, within PFLU_RS05540at 1247.696 kb on + strand, within PFLU_RS05540at 1247.696 kb on + strand, within PFLU_RS05540at 1247.696 kb on + strand, within PFLU_RS05540at 1247.696 kb on + strand, within PFLU_RS05540at 1247.696 kb on + strand, within PFLU_RS05540at 1247.696 kb on + strand, within PFLU_RS05540at 1247.696 kb on + strand, within PFLU_RS05540at 1247.696 kb on + strand, within PFLU_RS05540at 1247.696 kb on + strand, within PFLU_RS05540at 1247.697 kb on - strand, within PFLU_RS05540at 1247.697 kb on - strand, within PFLU_RS05540at 1247.697 kb on - strand, within PFLU_RS05540at 1247.697 kb on - strand, within PFLU_RS05540at 1247.697 kb on - strand, within PFLU_RS05540at 1247.697 kb on - strand, within PFLU_RS05540at 1247.697 kb on - strand, within PFLU_RS05540at 1247.697 kb on - strand, within PFLU_RS05540at 1247.747 kb on + strand, within PFLU_RS05540at 1247.747 kb on + strand, within PFLU_RS05540at 1247.747 kb on + strand, within PFLU_RS05540at 1247.747 kb on + strand, within PFLU_RS05540at 1247.747 kb on + strand, within PFLU_RS05540at 1247.748 kb on - strand, within PFLU_RS05540at 1247.748 kb on - strand, within PFLU_RS05540at 1247.748 kb on - strand, within PFLU_RS05540at 1247.748 kb on - strand, within PFLU_RS05540at 1247.748 kb on - strand, within PFLU_RS05540at 1247.748 kb on - strand, within PFLU_RS05540at 1247.748 kb on - strand, within PFLU_RS05540at 1247.748 kb on - strand, within PFLU_RS05540

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,245,348 + PFLU_RS05525 0.25 +0.3
1,245,349 - PFLU_RS05525 0.25 -0.1
1,245,349 - PFLU_RS05525 0.25 -2.1
1,245,349 - PFLU_RS05525 0.25 +0.7
1,245,349 - PFLU_RS05525 0.25 +1.3
1,245,537 + PFLU_RS05525 0.39 -0.2
1,245,558 + PFLU_RS05525 0.41 -0.7
1,245,558 + PFLU_RS05525 0.41 +0.1
1,245,558 + PFLU_RS05525 0.41 +0.3
1,245,558 + PFLU_RS05525 0.41 -0.4
1,245,558 + PFLU_RS05525 0.41 -0.9
1,245,558 + PFLU_RS05525 0.41 -0.1
1,245,559 - PFLU_RS05525 0.41 -1.3
1,245,654 + PFLU_RS05525 0.48 -0.3
1,245,655 - PFLU_RS05525 0.48 +0.1
1,245,717 + PFLU_RS05525 0.53 +1.1
1,245,718 - PFLU_RS05525 0.53 +0.0
1,245,718 - PFLU_RS05525 0.53 -0.4
1,245,718 - PFLU_RS05525 0.53 +0.4
1,245,718 - PFLU_RS05525 0.53 +0.2
1,245,891 + PFLU_RS05525 0.66 -0.8
1,245,891 + PFLU_RS05525 0.66 +0.1
1,245,891 + PFLU_RS05525 0.66 -0.2
1,245,892 - PFLU_RS05525 0.66 -1.4
1,245,892 - PFLU_RS05525 0.66 -0.5
1,245,892 - PFLU_RS05525 0.66 -0.3
1,246,035 + PFLU_RS05525 0.77 -0.6
1,246,035 + PFLU_RS05525 0.77 +0.8
1,246,035 + PFLU_RS05525 0.77 +0.3
1,246,035 + PFLU_RS05525 0.77 -0.7
1,246,035 + PFLU_RS05525 0.77 -0.8
1,246,035 + PFLU_RS05525 0.77 -2.3
1,246,036 - PFLU_RS05525 0.77 +0.6
1,246,036 - PFLU_RS05525 0.77 -1.6
1,246,036 - PFLU_RS05525 0.77 +0.1
1,246,036 - PFLU_RS05525 0.77 +0.3
1,246,047 + PFLU_RS05525 0.78 -0.6
1,246,047 + PFLU_RS05525 0.78 +0.4
1,246,048 - PFLU_RS05525 0.78 -0.2
1,246,048 - PFLU_RS05525 0.78 -0.8
1,246,048 - PFLU_RS05525 0.78 -2.2
1,246,063 - PFLU_RS05525 0.79 -0.4
1,246,190 + PFLU_RS05525 0.88 +0.3
1,246,190 + PFLU_RS05525 0.88 +0.1
1,246,190 + PFLU_RS05525 0.88 -0.1
1,246,190 + PFLU_RS05525 0.88 -0.6
1,246,191 - PFLU_RS05525 0.88 -0.0
1,246,191 - PFLU_RS05525 0.88 +0.8
1,246,191 - PFLU_RS05525 0.88 -0.4
1,246,296 + +0.8
1,246,308 - +0.0
1,246,308 - +0.9
1,246,316 - +0.2
1,246,351 + +0.4
1,246,351 + -0.9
1,246,351 + +0.7
1,246,351 + -1.6
1,246,351 + +0.4
1,246,352 - -1.0
1,246,352 - +1.1
1,246,352 - +2.9
1,246,352 - +0.7
1,246,354 + +0.4
1,246,407 + PFLU_RS05530 0.16 +0.1
1,246,407 + PFLU_RS05530 0.16 -0.8
1,246,407 + PFLU_RS05530 0.16 +0.9
1,246,407 + PFLU_RS05530 0.16 -0.3
1,246,407 + PFLU_RS05530 0.16 +0.2
1,246,407 + PFLU_RS05530 0.16 +0.7
1,246,407 + PFLU_RS05530 0.16 +0.8
1,246,407 + PFLU_RS05530 0.16 -2.9
1,246,408 - PFLU_RS05530 0.16 -1.1
1,246,408 - PFLU_RS05530 0.16 +0.7
1,246,408 - PFLU_RS05530 0.16 +0.5
1,246,408 - PFLU_RS05530 0.16 +1.0
1,246,408 - PFLU_RS05530 0.16 +1.5
1,246,408 - PFLU_RS05530 0.16 -0.4
1,246,408 - PFLU_RS05530 0.16 +0.6
1,246,408 - PFLU_RS05530 0.16 +0.3
1,246,408 - PFLU_RS05530 0.16 -1.2
1,246,538 + PFLU_RS05530 0.47 -0.5
1,246,653 + PFLU_RS05530 0.75 +0.3
1,246,653 + PFLU_RS05530 0.75 +0.5
1,246,654 - PFLU_RS05530 0.75 -0.5
1,246,654 - PFLU_RS05530 0.75 -2.2
1,246,654 - PFLU_RS05530 0.75 +0.6
1,246,727 + +0.6
1,246,761 + -1.6
1,246,761 + -0.1
1,246,761 + +0.1
1,246,762 - -1.4
1,246,976 - PFLU_RS05535 0.42 +0.9
1,247,019 + PFLU_RS05535 0.51 +0.4
1,247,019 + PFLU_RS05535 0.51 +1.5
1,247,019 + PFLU_RS05535 0.51 -0.9
1,247,020 - PFLU_RS05535 0.51 -0.4
1,247,020 - PFLU_RS05535 0.51 +0.3
1,247,020 - PFLU_RS05535 0.51 -0.0
1,247,020 - PFLU_RS05535 0.51 +1.3
1,247,023 + PFLU_RS05535 0.51 +0.6
1,247,023 + PFLU_RS05535 0.51 +0.1
1,247,023 + PFLU_RS05535 0.51 +0.4
1,247,023 + PFLU_RS05535 0.51 +0.2
1,247,023 + PFLU_RS05535 0.51 -1.3
1,247,023 + PFLU_RS05535 0.51 -0.8
1,247,023 + PFLU_RS05535 0.51 -1.7
1,247,023 + PFLU_RS05535 0.51 -0.1
1,247,023 + PFLU_RS05535 0.51 +0.4
1,247,023 + PFLU_RS05535 0.51 +0.0
1,247,023 + PFLU_RS05535 0.51 +0.6
1,247,023 + PFLU_RS05535 0.51 -1.7
1,247,023 + PFLU_RS05535 0.51 +0.4
1,247,023 + PFLU_RS05535 0.51 +0.3
1,247,023 + PFLU_RS05535 0.51 +0.6
1,247,023 + PFLU_RS05535 0.51 +0.1
1,247,023 + PFLU_RS05535 0.51 +1.1
1,247,023 + PFLU_RS05535 0.51 -0.9
1,247,023 + PFLU_RS05535 0.51 -0.2
1,247,024 - PFLU_RS05535 0.52 -0.6
1,247,024 - PFLU_RS05535 0.52 -0.6
1,247,024 - PFLU_RS05535 0.52 +0.7
1,247,024 - PFLU_RS05535 0.52 +0.1
1,247,024 - PFLU_RS05535 0.52 -0.7
1,247,024 - PFLU_RS05535 0.52 +0.5
1,247,024 - PFLU_RS05535 0.52 -1.3
1,247,024 - PFLU_RS05535 0.52 -0.2
1,247,024 - PFLU_RS05535 0.52 +1.3
1,247,024 - PFLU_RS05535 0.52 +0.3
1,247,024 - PFLU_RS05535 0.52 -0.6
1,247,162 - PFLU_RS05535 0.79 -0.0
1,247,162 - PFLU_RS05535 0.79 +0.3
1,247,185 + PFLU_RS05535 0.83 -0.6
1,247,185 + PFLU_RS05535 0.83 -0.9
1,247,186 - PFLU_RS05535 0.84 +0.5
1,247,186 - PFLU_RS05535 0.84 -0.4
1,247,224 + -1.0
1,247,224 + -2.5
1,247,224 + +0.7
1,247,225 - +1.1
1,247,225 - +0.9
1,247,225 - -1.2
1,247,269 + -0.6
1,247,391 + -0.2
1,247,391 + -2.1
1,247,391 + -0.7
1,247,391 + -0.9
1,247,392 - -0.7
1,247,392 - -1.7
1,247,392 - -0.3
1,247,393 + -1.1
1,247,393 + -0.2
1,247,393 + -1.3
1,247,393 + +0.3
1,247,393 + -4.0
1,247,393 + +0.4
1,247,394 - -0.5
1,247,394 - -1.1
1,247,394 - -0.5
1,247,394 - -1.3
1,247,429 + PFLU_RS05540 0.12 -1.0
1,247,429 + PFLU_RS05540 0.12 +0.9
1,247,429 + PFLU_RS05540 0.12 +0.7
1,247,429 + PFLU_RS05540 0.12 -0.2
1,247,430 - PFLU_RS05540 0.12 -1.2
1,247,430 - PFLU_RS05540 0.12 -1.0
1,247,430 - PFLU_RS05540 0.12 +1.0
1,247,492 + PFLU_RS05540 0.19 -0.9
1,247,492 + PFLU_RS05540 0.19 +0.2
1,247,492 + PFLU_RS05540 0.19 -0.1
1,247,492 + PFLU_RS05540 0.19 -0.2
1,247,493 - PFLU_RS05540 0.19 +0.5
1,247,696 + PFLU_RS05540 0.41 -0.3
1,247,696 + PFLU_RS05540 0.41 -3.1
1,247,696 + PFLU_RS05540 0.41 -0.6
1,247,696 + PFLU_RS05540 0.41 -0.0
1,247,696 + PFLU_RS05540 0.41 -1.3
1,247,696 + PFLU_RS05540 0.41 +0.1
1,247,696 + PFLU_RS05540 0.41 -1.0
1,247,696 + PFLU_RS05540 0.41 -0.1
1,247,696 + PFLU_RS05540 0.41 +1.6
1,247,697 - PFLU_RS05540 0.41 +0.3
1,247,697 - PFLU_RS05540 0.41 -0.2
1,247,697 - PFLU_RS05540 0.41 -0.4
1,247,697 - PFLU_RS05540 0.41 -0.4
1,247,697 - PFLU_RS05540 0.41 +0.8
1,247,697 - PFLU_RS05540 0.41 -1.3
1,247,697 - PFLU_RS05540 0.41 -1.3
1,247,697 - PFLU_RS05540 0.41 +1.1
1,247,747 + PFLU_RS05540 0.47 -2.5
1,247,747 + PFLU_RS05540 0.47 +0.3
1,247,747 + PFLU_RS05540 0.47 -0.9
1,247,747 + PFLU_RS05540 0.47 -1.5
1,247,747 + PFLU_RS05540 0.47 -0.9
1,247,748 - PFLU_RS05540 0.47 -1.1
1,247,748 - PFLU_RS05540 0.47 +0.8
1,247,748 - PFLU_RS05540 0.47 +0.2
1,247,748 - PFLU_RS05540 0.47 -0.3
1,247,748 - PFLU_RS05540 0.47 -0.1
1,247,748 - PFLU_RS05540 0.47 -0.0
1,247,748 - PFLU_RS05540 0.47 +0.6
1,247,748 - PFLU_RS05540 0.47 +0.7

Or see this region's nucleotide sequence