Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS01210

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS01205 and PFLU_RS01210 are separated by 3 nucleotidesPFLU_RS01210 and PFLU_RS01215 overlap by 1 nucleotides PFLU_RS01205: PFLU_RS01205 - L-cystine ABC transporter ATP-binding protein YecC, at 267,257 to 268,003 _RS01205 PFLU_RS01210: PFLU_RS01210 - cystine ABC transporter permease, at 268,007 to 268,672 _RS01210 PFLU_RS01215: PFLU_RS01215 - cystine ABC transporter substrate-binding protein, at 268,672 to 269,466 _RS01215 Position (kb) 268 269Strain fitness (log2 ratio) -2 -1 0 1 2at 267.065 kb on - strandat 267.065 kb on - strandat 267.097 kb on - strandat 267.097 kb on - strandat 267.097 kb on - strandat 267.097 kb on - strandat 267.146 kb on + strandat 267.147 kb on - strandat 267.255 kb on + strandat 267.255 kb on + strandat 267.255 kb on + strandat 267.255 kb on + strandat 267.255 kb on + strandat 267.255 kb on + strandat 267.256 kb on - strandat 267.256 kb on - strandat 267.256 kb on - strandat 267.256 kb on - strandat 267.256 kb on - strandat 267.256 kb on - strandat 267.957 kb on - strandat 268.086 kb on + strand, within PFLU_RS01210at 268.107 kb on + strand, within PFLU_RS01210at 268.107 kb on + strand, within PFLU_RS01210at 268.107 kb on + strand, within PFLU_RS01210at 268.107 kb on + strand, within PFLU_RS01210at 268.107 kb on + strand, within PFLU_RS01210at 268.107 kb on + strand, within PFLU_RS01210at 268.107 kb on + strand, within PFLU_RS01210at 268.107 kb on + strand, within PFLU_RS01210at 268.107 kb on + strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.214 kb on - strand, within PFLU_RS01210at 268.446 kb on + strand, within PFLU_RS01210at 268.446 kb on + strand, within PFLU_RS01210at 268.446 kb on + strand, within PFLU_RS01210at 268.446 kb on + strand, within PFLU_RS01210at 268.446 kb on + strand, within PFLU_RS01210at 268.446 kb on + strand, within PFLU_RS01210at 268.447 kb on - strand, within PFLU_RS01210at 268.447 kb on - strand, within PFLU_RS01210at 268.449 kb on + strand, within PFLU_RS01210at 268.449 kb on + strand, within PFLU_RS01210at 268.449 kb on + strand, within PFLU_RS01210at 268.449 kb on + strand, within PFLU_RS01210at 268.449 kb on + strand, within PFLU_RS01210at 268.450 kb on - strand, within PFLU_RS01210at 268.450 kb on - strand, within PFLU_RS01210at 268.450 kb on - strand, within PFLU_RS01210at 268.450 kb on - strand, within PFLU_RS01210at 268.450 kb on - strand, within PFLU_RS01210at 268.466 kb on + strand, within PFLU_RS01210at 268.467 kb on - strand, within PFLU_RS01210at 268.467 kb on - strand, within PFLU_RS01210at 268.467 kb on - strand, within PFLU_RS01210at 268.500 kb on + strand, within PFLU_RS01210at 268.500 kb on + strand, within PFLU_RS01210at 268.500 kb on + strand, within PFLU_RS01210at 268.500 kb on + strand, within PFLU_RS01210at 268.501 kb on - strand, within PFLU_RS01210at 268.501 kb on - strand, within PFLU_RS01210at 268.501 kb on - strand, within PFLU_RS01210at 268.501 kb on - strand, within PFLU_RS01210at 268.501 kb on - strand, within PFLU_RS01210at 268.501 kb on - strand, within PFLU_RS01210at 268.501 kb on - strand, within PFLU_RS01210at 268.501 kb on - strand, within PFLU_RS01210at 268.501 kb on - strand, within PFLU_RS01210at 268.598 kb on - strand, within PFLU_RS01210at 268.611 kb on + strandat 268.611 kb on + strandat 268.611 kb on + strandat 268.611 kb on + strandat 268.612 kb on - strandat 268.612 kb on - strandat 268.612 kb on - strandat 268.612 kb on - strandat 268.614 kb on + strandat 268.673 kb on + strandat 268.697 kb on + strandat 268.698 kb on - strandat 268.797 kb on + strand, within PFLU_RS01215at 268.943 kb on + strand, within PFLU_RS01215at 268.943 kb on + strand, within PFLU_RS01215at 268.943 kb on + strand, within PFLU_RS01215at 268.943 kb on + strand, within PFLU_RS01215at 268.943 kb on + strand, within PFLU_RS01215at 268.943 kb on + strand, within PFLU_RS01215at 268.943 kb on + strand, within PFLU_RS01215at 268.944 kb on - strand, within PFLU_RS01215at 268.944 kb on - strand, within PFLU_RS01215at 268.944 kb on - strand, within PFLU_RS01215at 268.944 kb on - strand, within PFLU_RS01215at 268.944 kb on - strand, within PFLU_RS01215at 268.944 kb on - strand, within PFLU_RS01215at 268.944 kb on - strand, within PFLU_RS01215at 268.944 kb on - strand, within PFLU_RS01215at 268.944 kb on - strand, within PFLU_RS01215at 268.944 kb on - strand, within PFLU_RS01215at 268.991 kb on + strand, within PFLU_RS01215at 268.991 kb on + strand, within PFLU_RS01215at 268.991 kb on + strand, within PFLU_RS01215at 268.992 kb on - strand, within PFLU_RS01215at 268.992 kb on - strand, within PFLU_RS01215at 268.992 kb on - strand, within PFLU_RS01215at 269.099 kb on + strand, within PFLU_RS01215at 269.099 kb on + strand, within PFLU_RS01215at 269.099 kb on + strand, within PFLU_RS01215at 269.099 kb on + strand, within PFLU_RS01215at 269.099 kb on + strand, within PFLU_RS01215at 269.100 kb on - strand, within PFLU_RS01215at 269.100 kb on - strand, within PFLU_RS01215at 269.100 kb on - strand, within PFLU_RS01215at 269.100 kb on - strand, within PFLU_RS01215at 269.100 kb on - strand, within PFLU_RS01215at 269.100 kb on - strand, within PFLU_RS01215at 269.100 kb on - strand, within PFLU_RS01215at 269.100 kb on - strand, within PFLU_RS01215at 269.100 kb on - strand, within PFLU_RS01215at 269.100 kb on - strand, within PFLU_RS01215at 269.100 kb on - strand, within PFLU_RS01215at 269.117 kb on + strand, within PFLU_RS01215at 269.117 kb on + strand, within PFLU_RS01215at 269.118 kb on - strand, within PFLU_RS01215at 269.118 kb on - strand, within PFLU_RS01215at 269.118 kb on - strand, within PFLU_RS01215at 269.318 kb on + strand, within PFLU_RS01215at 269.319 kb on - strand, within PFLU_RS01215at 269.319 kb on - strand, within PFLU_RS01215at 269.452 kb on + strandat 269.452 kb on + strandat 269.460 kb on + strandat 269.460 kb on + strandat 269.460 kb on + strandat 269.460 kb on + strandat 269.460 kb on + strandat 269.460 kb on + strandat 269.461 kb on - strandat 269.461 kb on - strandat 269.461 kb on - strandat 269.461 kb on - strandat 269.461 kb on - strandat 269.461 kb on - strandat 269.461 kb on - strandat 269.461 kb on - strandat 269.461 kb on - strandat 269.461 kb on - strandat 269.461 kb on - strandat 269.487 kb on - strandat 269.487 kb on - strandat 269.512 kb on + strandat 269.512 kb on + strandat 269.513 kb on - strandat 269.513 kb on - strandat 269.513 kb on - strandat 269.518 kb on + strandat 269.519 kb on - strandat 269.553 kb on - strandat 269.565 kb on + strandat 269.566 kb on - strandat 269.566 kb on - strandat 269.638 kb on + strandat 269.638 kb on + strandat 269.638 kb on + strandat 269.638 kb on + strandat 269.638 kb on + strandat 269.638 kb on + strandat 269.638 kb on + strandat 269.638 kb on + strandat 269.639 kb on - strandat 269.639 kb on - strandat 269.639 kb on - strandat 269.639 kb on - strandat 269.639 kb on - strandat 269.639 kb on - strandat 269.639 kb on - strandat 269.639 kb on - strandat 269.639 kb on - strandat 269.639 kb on - strandat 269.639 kb on - strandat 269.639 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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267,065 - -0.3
267,065 - -0.7
267,097 - -1.6
267,097 - +0.2
267,097 - +0.6
267,097 - -0.8
267,146 + +1.2
267,147 - -0.1
267,255 + -0.7
267,255 + +0.3
267,255 + -1.0
267,255 + +0.8
267,255 + +0.7
267,255 + -0.1
267,256 - -0.3
267,256 - +0.0
267,256 - +0.7
267,256 - +0.2
267,256 - +0.5
267,256 - +0.3
267,957 - +1.4
268,086 + PFLU_RS01210 0.12 +0.4
268,107 + PFLU_RS01210 0.15 +0.3
268,107 + PFLU_RS01210 0.15 +0.7
268,107 + PFLU_RS01210 0.15 -1.0
268,107 + PFLU_RS01210 0.15 -0.2
268,107 + PFLU_RS01210 0.15 +0.3
268,107 + PFLU_RS01210 0.15 +0.3
268,107 + PFLU_RS01210 0.15 +1.2
268,107 + PFLU_RS01210 0.15 +0.5
268,107 + PFLU_RS01210 0.15 +0.0
268,108 - PFLU_RS01210 0.15 -0.7
268,108 - PFLU_RS01210 0.15 -0.7
268,108 - PFLU_RS01210 0.15 -0.2
268,108 - PFLU_RS01210 0.15 -0.5
268,108 - PFLU_RS01210 0.15 +2.3
268,108 - PFLU_RS01210 0.15 +0.3
268,108 - PFLU_RS01210 0.15 +0.4
268,108 - PFLU_RS01210 0.15 -1.3
268,108 - PFLU_RS01210 0.15 -0.1
268,108 - PFLU_RS01210 0.15 +1.5
268,108 - PFLU_RS01210 0.15 +1.7
268,108 - PFLU_RS01210 0.15 +0.4
268,108 - PFLU_RS01210 0.15 -0.3
268,214 - PFLU_RS01210 0.31 +0.4
268,446 + PFLU_RS01210 0.66 -0.5
268,446 + PFLU_RS01210 0.66 -0.3
268,446 + PFLU_RS01210 0.66 -0.1
268,446 + PFLU_RS01210 0.66 -0.6
268,446 + PFLU_RS01210 0.66 +0.6
268,446 + PFLU_RS01210 0.66 -0.2
268,447 - PFLU_RS01210 0.66 +0.4
268,447 - PFLU_RS01210 0.66 +0.0
268,449 + PFLU_RS01210 0.66 +0.4
268,449 + PFLU_RS01210 0.66 +0.3
268,449 + PFLU_RS01210 0.66 +0.0
268,449 + PFLU_RS01210 0.66 +1.5
268,449 + PFLU_RS01210 0.66 +1.0
268,450 - PFLU_RS01210 0.67 -0.3
268,450 - PFLU_RS01210 0.67 -0.9
268,450 - PFLU_RS01210 0.67 +0.9
268,450 - PFLU_RS01210 0.67 +0.9
268,450 - PFLU_RS01210 0.67 +0.2
268,466 + PFLU_RS01210 0.69 -0.0
268,467 - PFLU_RS01210 0.69 -0.2
268,467 - PFLU_RS01210 0.69 +0.3
268,467 - PFLU_RS01210 0.69 -0.7
268,500 + PFLU_RS01210 0.74 +0.8
268,500 + PFLU_RS01210 0.74 +0.1
268,500 + PFLU_RS01210 0.74 -0.6
268,500 + PFLU_RS01210 0.74 -0.8
268,501 - PFLU_RS01210 0.74 +2.0
268,501 - PFLU_RS01210 0.74 +0.5
268,501 - PFLU_RS01210 0.74 -0.2
268,501 - PFLU_RS01210 0.74 -0.5
268,501 - PFLU_RS01210 0.74 -0.5
268,501 - PFLU_RS01210 0.74 +1.0
268,501 - PFLU_RS01210 0.74 -0.5
268,501 - PFLU_RS01210 0.74 +1.1
268,501 - PFLU_RS01210 0.74 +0.3
268,598 - PFLU_RS01210 0.89 +0.8
268,611 + -0.1
268,611 + -0.3
268,611 + -0.5
268,611 + -1.3
268,612 - -0.8
268,612 - +0.6
268,612 - -0.4
268,612 - +0.6
268,614 + +2.1
268,673 + -0.3
268,697 + -2.3
268,698 - -0.6
268,797 + PFLU_RS01215 0.16 +0.6
268,943 + PFLU_RS01215 0.34 -1.1
268,943 + PFLU_RS01215 0.34 +0.7
268,943 + PFLU_RS01215 0.34 +0.2
268,943 + PFLU_RS01215 0.34 +2.3
268,943 + PFLU_RS01215 0.34 -2.7
268,943 + PFLU_RS01215 0.34 -1.3
268,943 + PFLU_RS01215 0.34 +0.2
268,944 - PFLU_RS01215 0.34 +1.2
268,944 - PFLU_RS01215 0.34 -0.3
268,944 - PFLU_RS01215 0.34 -1.3
268,944 - PFLU_RS01215 0.34 +0.6
268,944 - PFLU_RS01215 0.34 +1.0
268,944 - PFLU_RS01215 0.34 -0.3
268,944 - PFLU_RS01215 0.34 +0.4
268,944 - PFLU_RS01215 0.34 -0.0
268,944 - PFLU_RS01215 0.34 -1.2
268,944 - PFLU_RS01215 0.34 +0.7
268,991 + PFLU_RS01215 0.40 -0.4
268,991 + PFLU_RS01215 0.40 -0.3
268,991 + PFLU_RS01215 0.40 -0.1
268,992 - PFLU_RS01215 0.40 -1.0
268,992 - PFLU_RS01215 0.40 +1.9
268,992 - PFLU_RS01215 0.40 +0.7
269,099 + PFLU_RS01215 0.54 +0.4
269,099 + PFLU_RS01215 0.54 -1.1
269,099 + PFLU_RS01215 0.54 -0.5
269,099 + PFLU_RS01215 0.54 +0.6
269,099 + PFLU_RS01215 0.54 +0.1
269,100 - PFLU_RS01215 0.54 +0.5
269,100 - PFLU_RS01215 0.54 +0.9
269,100 - PFLU_RS01215 0.54 -1.3
269,100 - PFLU_RS01215 0.54 -1.4
269,100 - PFLU_RS01215 0.54 +0.3
269,100 - PFLU_RS01215 0.54 +0.7
269,100 - PFLU_RS01215 0.54 -0.9
269,100 - PFLU_RS01215 0.54 -1.1
269,100 - PFLU_RS01215 0.54 -0.2
269,100 - PFLU_RS01215 0.54 -1.2
269,100 - PFLU_RS01215 0.54 +0.2
269,117 + PFLU_RS01215 0.56 +0.0
269,117 + PFLU_RS01215 0.56 +0.6
269,118 - PFLU_RS01215 0.56 +0.0
269,118 - PFLU_RS01215 0.56 -2.3
269,118 - PFLU_RS01215 0.56 +0.0
269,318 + PFLU_RS01215 0.81 +0.4
269,319 - PFLU_RS01215 0.81 -0.4
269,319 - PFLU_RS01215 0.81 -1.7
269,452 + -0.4
269,452 + +0.7
269,460 + +0.1
269,460 + -1.1
269,460 + +0.5
269,460 + +1.0
269,460 + +0.3
269,460 + +0.7
269,461 - +0.5
269,461 - -0.1
269,461 - -1.0
269,461 - -0.8
269,461 - +1.3
269,461 - -0.2
269,461 - -1.2
269,461 - -0.0
269,461 - +1.2
269,461 - -0.6
269,461 - -0.0
269,487 - +0.6
269,487 - -0.3
269,512 + +0.1
269,512 + +0.5
269,513 - +0.4
269,513 - +0.3
269,513 - -1.6
269,518 + +0.1
269,519 - -0.9
269,553 - +1.2
269,565 + +1.1
269,566 - -1.9
269,566 - +0.5
269,638 + -2.0
269,638 + +1.5
269,638 + -0.7
269,638 + -0.3
269,638 + +0.3
269,638 + -0.3
269,638 + -1.4
269,638 + +0.9
269,639 - +0.7
269,639 - +1.1
269,639 - -0.7
269,639 - +0.1
269,639 - +1.1
269,639 - +1.1
269,639 - -1.6
269,639 - -0.6
269,639 - -0.0
269,639 - +0.9
269,639 - -0.7
269,639 - -1.0

Or see this region's nucleotide sequence