Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS00780

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS00770 and PFLU_RS00775 are separated by 25 nucleotidesPFLU_RS00775 and PFLU_RS00780 are separated by 144 nucleotidesPFLU_RS00780 and PFLU_RS00785 are separated by 39 nucleotidesPFLU_RS00785 and PFLU_RS00790 are separated by 71 nucleotides PFLU_RS00770: PFLU_RS00770 - hypothetical protein, at 176,471 to 176,958 _RS00770 PFLU_RS00775: PFLU_RS00775 - hypothetical protein, at 176,984 to 177,433 _RS00775 PFLU_RS00780: PFLU_RS00780 - SMI1/KNR4 family protein, at 177,578 to 178,027 _RS00780 PFLU_RS00785: PFLU_RS00785 - signal peptidase I, at 178,067 to 178,855 _RS00785 PFLU_RS00790: PFLU_RS00790 - hypothetical protein, at 178,927 to 179,268 _RS00790 Position (kb) 177 178 179Strain fitness (log2 ratio) -2 -1 0 1 2at 176.632 kb on - strand, within PFLU_RS00770at 176.709 kb on + strand, within PFLU_RS00770at 176.709 kb on + strand, within PFLU_RS00770at 176.716 kb on + strand, within PFLU_RS00770at 176.759 kb on + strand, within PFLU_RS00770at 176.760 kb on - strand, within PFLU_RS00770at 176.878 kb on + strand, within PFLU_RS00770at 176.898 kb on - strand, within PFLU_RS00770at 176.898 kb on - strand, within PFLU_RS00770at 176.949 kb on + strandat 177.049 kb on + strand, within PFLU_RS00775at 177.050 kb on - strand, within PFLU_RS00775at 177.221 kb on + strand, within PFLU_RS00775at 177.222 kb on - strand, within PFLU_RS00775at 177.222 kb on - strand, within PFLU_RS00775at 177.251 kb on + strand, within PFLU_RS00775at 177.252 kb on - strand, within PFLU_RS00775at 177.584 kb on + strandat 177.584 kb on + strandat 177.635 kb on + strand, within PFLU_RS00780at 177.660 kb on + strand, within PFLU_RS00780at 177.675 kb on + strand, within PFLU_RS00780at 177.675 kb on + strand, within PFLU_RS00780at 177.676 kb on - strand, within PFLU_RS00780at 177.725 kb on + strand, within PFLU_RS00780at 177.726 kb on - strand, within PFLU_RS00780at 177.777 kb on - strand, within PFLU_RS00780at 177.800 kb on + strand, within PFLU_RS00780at 177.841 kb on + strand, within PFLU_RS00780at 177.841 kb on + strand, within PFLU_RS00780at 177.841 kb on + strand, within PFLU_RS00780at 177.841 kb on + strand, within PFLU_RS00780at 177.841 kb on + strand, within PFLU_RS00780at 177.841 kb on + strand, within PFLU_RS00780at 177.841 kb on + strand, within PFLU_RS00780at 177.841 kb on + strand, within PFLU_RS00780at 177.841 kb on + strand, within PFLU_RS00780at 177.842 kb on - strand, within PFLU_RS00780at 177.842 kb on - strand, within PFLU_RS00780at 177.842 kb on - strand, within PFLU_RS00780at 177.842 kb on - strand, within PFLU_RS00780at 177.842 kb on - strand, within PFLU_RS00780at 177.842 kb on - strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.846 kb on - strand, within PFLU_RS00780at 177.846 kb on - strand, within PFLU_RS00780at 177.846 kb on - strand, within PFLU_RS00780at 177.846 kb on - strand, within PFLU_RS00780at 177.846 kb on - strand, within PFLU_RS00780at 177.846 kb on - strand, within PFLU_RS00780at 177.846 kb on - strand, within PFLU_RS00780at 177.846 kb on - strand, within PFLU_RS00780at 177.846 kb on - strand, within PFLU_RS00780at 177.846 kb on - strand, within PFLU_RS00780at 177.846 kb on - strand, within PFLU_RS00780at 177.878 kb on + strand, within PFLU_RS00780at 177.879 kb on - strand, within PFLU_RS00780at 178.002 kb on - strandat 178.025 kb on + strandat 178.025 kb on + strandat 178.025 kb on + strandat 178.025 kb on + strandat 178.026 kb on - strandat 178.026 kb on - strandat 178.026 kb on - strandat 178.052 kb on + strandat 178.055 kb on + strandat 178.077 kb on + strandat 178.136 kb on + strandat 178.136 kb on + strandat 178.136 kb on + strandat 178.136 kb on + strandat 178.136 kb on + strandat 178.137 kb on - strandat 178.137 kb on - strandat 178.137 kb on - strandat 178.137 kb on - strandat 178.137 kb on - strandat 178.137 kb on - strandat 178.137 kb on - strandat 178.181 kb on + strand, within PFLU_RS00785at 178.182 kb on - strand, within PFLU_RS00785at 178.182 kb on - strand, within PFLU_RS00785at 178.182 kb on - strand, within PFLU_RS00785at 178.182 kb on - strand, within PFLU_RS00785at 178.182 kb on - strand, within PFLU_RS00785at 178.238 kb on + strand, within PFLU_RS00785at 178.238 kb on + strand, within PFLU_RS00785at 178.238 kb on + strand, within PFLU_RS00785at 178.238 kb on + strand, within PFLU_RS00785at 178.238 kb on + strand, within PFLU_RS00785at 178.238 kb on + strand, within PFLU_RS00785at 178.238 kb on + strand, within PFLU_RS00785at 178.238 kb on + strand, within PFLU_RS00785at 178.238 kb on + strand, within PFLU_RS00785at 178.238 kb on + strand, within PFLU_RS00785at 178.239 kb on - strand, within PFLU_RS00785at 178.239 kb on - strand, within PFLU_RS00785at 178.239 kb on - strand, within PFLU_RS00785at 178.239 kb on - strand, within PFLU_RS00785at 178.239 kb on - strand, within PFLU_RS00785at 178.239 kb on - strand, within PFLU_RS00785at 178.354 kb on - strand, within PFLU_RS00785at 178.355 kb on + strand, within PFLU_RS00785at 178.355 kb on + strand, within PFLU_RS00785at 178.355 kb on + strand, within PFLU_RS00785at 178.355 kb on + strand, within PFLU_RS00785at 178.355 kb on + strand, within PFLU_RS00785at 178.355 kb on + strand, within PFLU_RS00785at 178.355 kb on + strand, within PFLU_RS00785at 178.355 kb on + strand, within PFLU_RS00785at 178.355 kb on + strand, within PFLU_RS00785at 178.355 kb on + strand, within PFLU_RS00785at 178.355 kb on + strand, within PFLU_RS00785at 178.356 kb on - strand, within PFLU_RS00785at 178.356 kb on - strand, within PFLU_RS00785at 178.356 kb on - strand, within PFLU_RS00785at 178.356 kb on - strand, within PFLU_RS00785at 178.356 kb on - strand, within PFLU_RS00785at 178.356 kb on - strand, within PFLU_RS00785at 178.430 kb on + strand, within PFLU_RS00785at 178.431 kb on - strand, within PFLU_RS00785at 178.431 kb on - strand, within PFLU_RS00785at 178.433 kb on + strand, within PFLU_RS00785at 178.433 kb on + strand, within PFLU_RS00785at 178.433 kb on + strand, within PFLU_RS00785at 178.433 kb on + strand, within PFLU_RS00785at 178.433 kb on + strand, within PFLU_RS00785at 178.434 kb on - strand, within PFLU_RS00785at 178.434 kb on - strand, within PFLU_RS00785at 178.434 kb on - strand, within PFLU_RS00785at 178.478 kb on + strand, within PFLU_RS00785at 178.478 kb on + strand, within PFLU_RS00785at 178.478 kb on + strand, within PFLU_RS00785at 178.478 kb on + strand, within PFLU_RS00785at 178.478 kb on + strand, within PFLU_RS00785at 178.478 kb on + strand, within PFLU_RS00785at 178.478 kb on + strand, within PFLU_RS00785at 178.479 kb on - strand, within PFLU_RS00785at 178.479 kb on - strand, within PFLU_RS00785at 178.479 kb on - strand, within PFLU_RS00785at 178.479 kb on - strand, within PFLU_RS00785at 178.522 kb on + strand, within PFLU_RS00785at 178.532 kb on + strand, within PFLU_RS00785at 178.532 kb on + strand, within PFLU_RS00785at 178.533 kb on - strand, within PFLU_RS00785at 178.586 kb on - strand, within PFLU_RS00785at 178.586 kb on - strand, within PFLU_RS00785at 178.718 kb on + strand, within PFLU_RS00785at 178.718 kb on + strand, within PFLU_RS00785at 178.719 kb on - strand, within PFLU_RS00785at 178.719 kb on - strand, within PFLU_RS00785at 178.719 kb on - strand, within PFLU_RS00785at 178.742 kb on - strand, within PFLU_RS00785at 178.742 kb on - strand, within PFLU_RS00785at 178.762 kb on + strand, within PFLU_RS00785at 178.762 kb on + strand, within PFLU_RS00785at 178.840 kb on + strandat 178.840 kb on + strandat 178.840 kb on + strandat 178.840 kb on + strandat 178.841 kb on - strandat 178.841 kb on - strandat 178.841 kb on - strandat 178.841 kb on - strandat 178.841 kb on - strandat 178.967 kb on - strand, within PFLU_RS00790

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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176,632 - PFLU_RS00770 0.33 +0.2
176,709 + PFLU_RS00770 0.49 +1.4
176,709 + PFLU_RS00770 0.49 +2.4
176,716 + PFLU_RS00770 0.50 -1.4
176,759 + PFLU_RS00770 0.59 +0.0
176,760 - PFLU_RS00770 0.59 -0.6
176,878 + PFLU_RS00770 0.83 +1.4
176,898 - PFLU_RS00770 0.88 -1.3
176,898 - PFLU_RS00770 0.88 +0.1
176,949 + -2.1
177,049 + PFLU_RS00775 0.14 -0.1
177,050 - PFLU_RS00775 0.15 -0.8
177,221 + PFLU_RS00775 0.53 +0.8
177,222 - PFLU_RS00775 0.53 -0.3
177,222 - PFLU_RS00775 0.53 +0.7
177,251 + PFLU_RS00775 0.59 +0.8
177,252 - PFLU_RS00775 0.60 +0.9
177,584 + +0.1
177,584 + +0.1
177,635 + PFLU_RS00780 0.13 +0.5
177,660 + PFLU_RS00780 0.18 +0.2
177,675 + PFLU_RS00780 0.22 +0.4
177,675 + PFLU_RS00780 0.22 -0.2
177,676 - PFLU_RS00780 0.22 -0.5
177,725 + PFLU_RS00780 0.33 -0.8
177,726 - PFLU_RS00780 0.33 -0.4
177,777 - PFLU_RS00780 0.44 -0.9
177,800 + PFLU_RS00780 0.49 +1.4
177,841 + PFLU_RS00780 0.58 +0.1
177,841 + PFLU_RS00780 0.58 -0.6
177,841 + PFLU_RS00780 0.58 +0.5
177,841 + PFLU_RS00780 0.58 +0.8
177,841 + PFLU_RS00780 0.58 +0.1
177,841 + PFLU_RS00780 0.58 -0.4
177,841 + PFLU_RS00780 0.58 +0.6
177,841 + PFLU_RS00780 0.58 +0.3
177,841 + PFLU_RS00780 0.58 -1.9
177,842 - PFLU_RS00780 0.59 +0.9
177,842 - PFLU_RS00780 0.59 +1.0
177,842 - PFLU_RS00780 0.59 -0.4
177,842 - PFLU_RS00780 0.59 -0.6
177,842 - PFLU_RS00780 0.59 -0.7
177,842 - PFLU_RS00780 0.59 +1.1
177,845 + PFLU_RS00780 0.59 +1.8
177,845 + PFLU_RS00780 0.59 +2.6
177,845 + PFLU_RS00780 0.59 +2.3
177,845 + PFLU_RS00780 0.59 +1.4
177,845 + PFLU_RS00780 0.59 +1.1
177,845 + PFLU_RS00780 0.59 +1.1
177,845 + PFLU_RS00780 0.59 +2.2
177,845 + PFLU_RS00780 0.59 +0.2
177,845 + PFLU_RS00780 0.59 +0.4
177,845 + PFLU_RS00780 0.59 +0.5
177,845 + PFLU_RS00780 0.59 -0.9
177,845 + PFLU_RS00780 0.59 -0.5
177,845 + PFLU_RS00780 0.59 -1.2
177,846 - PFLU_RS00780 0.60 +0.7
177,846 - PFLU_RS00780 0.60 -0.8
177,846 - PFLU_RS00780 0.60 +0.4
177,846 - PFLU_RS00780 0.60 +2.2
177,846 - PFLU_RS00780 0.60 -0.1
177,846 - PFLU_RS00780 0.60 -1.8
177,846 - PFLU_RS00780 0.60 +0.0
177,846 - PFLU_RS00780 0.60 -0.6
177,846 - PFLU_RS00780 0.60 -1.9
177,846 - PFLU_RS00780 0.60 -0.4
177,846 - PFLU_RS00780 0.60 +0.9
177,878 + PFLU_RS00780 0.67 -1.3
177,879 - PFLU_RS00780 0.67 +0.3
178,002 - +0.3
178,025 + -1.5
178,025 + +0.4
178,025 + -0.2
178,025 + +1.0
178,026 - -0.7
178,026 - +0.7
178,026 - -0.2
178,052 + -0.3
178,055 + +0.2
178,077 + +1.1
178,136 + +0.1
178,136 + +1.0
178,136 + -1.8
178,136 + +0.2
178,136 + -1.8
178,137 - +0.4
178,137 - +0.5
178,137 - +0.7
178,137 - +0.2
178,137 - +2.7
178,137 - +0.4
178,137 - -0.5
178,181 + PFLU_RS00785 0.14 +1.3
178,182 - PFLU_RS00785 0.15 -1.4
178,182 - PFLU_RS00785 0.15 -0.4
178,182 - PFLU_RS00785 0.15 +0.6
178,182 - PFLU_RS00785 0.15 +0.2
178,182 - PFLU_RS00785 0.15 +0.4
178,238 + PFLU_RS00785 0.22 +0.8
178,238 + PFLU_RS00785 0.22 -0.9
178,238 + PFLU_RS00785 0.22 -0.6
178,238 + PFLU_RS00785 0.22 +0.1
178,238 + PFLU_RS00785 0.22 -0.3
178,238 + PFLU_RS00785 0.22 -0.3
178,238 + PFLU_RS00785 0.22 -0.5
178,238 + PFLU_RS00785 0.22 -0.4
178,238 + PFLU_RS00785 0.22 -0.7
178,238 + PFLU_RS00785 0.22 -0.5
178,239 - PFLU_RS00785 0.22 +2.0
178,239 - PFLU_RS00785 0.22 +0.1
178,239 - PFLU_RS00785 0.22 +1.0
178,239 - PFLU_RS00785 0.22 -0.6
178,239 - PFLU_RS00785 0.22 -0.0
178,239 - PFLU_RS00785 0.22 +1.0
178,354 - PFLU_RS00785 0.36 -0.4
178,355 + PFLU_RS00785 0.37 +0.9
178,355 + PFLU_RS00785 0.37 -0.5
178,355 + PFLU_RS00785 0.37 +0.6
178,355 + PFLU_RS00785 0.37 -0.7
178,355 + PFLU_RS00785 0.37 -0.1
178,355 + PFLU_RS00785 0.37 +1.4
178,355 + PFLU_RS00785 0.37 -0.1
178,355 + PFLU_RS00785 0.37 -0.7
178,355 + PFLU_RS00785 0.37 -0.2
178,355 + PFLU_RS00785 0.37 -0.5
178,355 + PFLU_RS00785 0.37 +0.4
178,356 - PFLU_RS00785 0.37 +1.3
178,356 - PFLU_RS00785 0.37 +1.6
178,356 - PFLU_RS00785 0.37 +0.1
178,356 - PFLU_RS00785 0.37 -2.7
178,356 - PFLU_RS00785 0.37 -0.6
178,356 - PFLU_RS00785 0.37 -1.0
178,430 + PFLU_RS00785 0.46 -1.4
178,431 - PFLU_RS00785 0.46 +0.9
178,431 - PFLU_RS00785 0.46 -0.2
178,433 + PFLU_RS00785 0.46 -0.6
178,433 + PFLU_RS00785 0.46 +1.5
178,433 + PFLU_RS00785 0.46 +0.7
178,433 + PFLU_RS00785 0.46 +0.7
178,433 + PFLU_RS00785 0.46 +0.4
178,434 - PFLU_RS00785 0.47 +0.0
178,434 - PFLU_RS00785 0.47 -0.0
178,434 - PFLU_RS00785 0.47 +0.3
178,478 + PFLU_RS00785 0.52 -0.9
178,478 + PFLU_RS00785 0.52 -1.6
178,478 + PFLU_RS00785 0.52 +0.4
178,478 + PFLU_RS00785 0.52 +0.8
178,478 + PFLU_RS00785 0.52 +0.2
178,478 + PFLU_RS00785 0.52 -0.9
178,478 + PFLU_RS00785 0.52 +1.4
178,479 - PFLU_RS00785 0.52 -0.1
178,479 - PFLU_RS00785 0.52 +1.0
178,479 - PFLU_RS00785 0.52 +1.2
178,479 - PFLU_RS00785 0.52 +0.5
178,522 + PFLU_RS00785 0.58 +0.1
178,532 + PFLU_RS00785 0.59 -1.7
178,532 + PFLU_RS00785 0.59 +0.2
178,533 - PFLU_RS00785 0.59 +0.9
178,586 - PFLU_RS00785 0.66 -1.3
178,586 - PFLU_RS00785 0.66 +0.5
178,718 + PFLU_RS00785 0.83 +0.9
178,718 + PFLU_RS00785 0.83 +0.3
178,719 - PFLU_RS00785 0.83 +1.3
178,719 - PFLU_RS00785 0.83 -0.2
178,719 - PFLU_RS00785 0.83 +0.6
178,742 - PFLU_RS00785 0.86 +0.9
178,742 - PFLU_RS00785 0.86 +0.8
178,762 + PFLU_RS00785 0.88 +0.2
178,762 + PFLU_RS00785 0.88 +0.6
178,840 + +0.2
178,840 + -0.4
178,840 + -0.5
178,840 + -0.4
178,841 - +0.9
178,841 - +0.1
178,841 - -1.3
178,841 - +0.2
178,841 - +0.8
178,967 - PFLU_RS00790 0.12 -1.2

Or see this region's nucleotide sequence