Strain Fitness in Pseudomonas sp. S08-1 around OH686_22665

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_22655 and OH686_22660 overlap by 4 nucleotidesOH686_22660 and OH686_22665 are separated by 81 nucleotidesOH686_22665 and OH686_22670 overlap by 4 nucleotides OH686_22655: OH686_22655 - Uncharacterized efflux ABC transporter, ATP-binding protein YadG, at 4,595,857 to 4,596,789 _22655 OH686_22660: OH686_22660 - Uncharacterized efflux ABC transporter, permease protein YadH, at 4,596,786 to 4,597,565 _22660 OH686_22665: OH686_22665 - Probable RND efflux membrane fusion protein, at 4,597,647 to 4,598,666 _22665 OH686_22670: OH686_22670 - RND efflux system, inner membrane transporter, at 4,598,663 to 4,601,731 _22670 Position (kb) 4597 4598 4599Strain fitness (log2 ratio) -3 -2 -1 0 1at 4596.906 kb on + strand, within OH686_22660at 4596.906 kb on + strand, within OH686_22660at 4596.906 kb on + strand, within OH686_22660at 4596.906 kb on + strand, within OH686_22660at 4596.906 kb on + strand, within OH686_22660at 4596.907 kb on - strand, within OH686_22660at 4596.907 kb on - strand, within OH686_22660at 4596.907 kb on - strand, within OH686_22660at 4596.907 kb on - strand, within OH686_22660at 4596.960 kb on + strand, within OH686_22660at 4596.960 kb on + strand, within OH686_22660at 4596.960 kb on + strand, within OH686_22660at 4596.966 kb on + strand, within OH686_22660at 4596.966 kb on + strand, within OH686_22660at 4596.966 kb on + strand, within OH686_22660at 4596.966 kb on + strand, within OH686_22660at 4596.966 kb on + strand, within OH686_22660at 4596.966 kb on + strand, within OH686_22660at 4596.966 kb on + strand, within OH686_22660at 4596.966 kb on + strand, within OH686_22660at 4596.967 kb on - strand, within OH686_22660at 4596.967 kb on - strand, within OH686_22660at 4596.967 kb on - strand, within OH686_22660at 4596.967 kb on - strand, within OH686_22660at 4596.967 kb on - strand, within OH686_22660at 4596.967 kb on - strand, within OH686_22660at 4596.967 kb on - strand, within OH686_22660at 4596.967 kb on - strand, within OH686_22660at 4596.967 kb on - strand, within OH686_22660at 4596.967 kb on - strand, within OH686_22660at 4596.967 kb on - strand, within OH686_22660at 4596.967 kb on - strand, within OH686_22660at 4597.020 kb on + strand, within OH686_22660at 4597.020 kb on + strand, within OH686_22660at 4597.020 kb on + strand, within OH686_22660at 4597.020 kb on + strand, within OH686_22660at 4597.020 kb on + strand, within OH686_22660at 4597.020 kb on + strand, within OH686_22660at 4597.021 kb on - strand, within OH686_22660at 4597.119 kb on + strand, within OH686_22660at 4597.120 kb on - strand, within OH686_22660at 4597.231 kb on + strand, within OH686_22660at 4597.232 kb on - strand, within OH686_22660at 4597.232 kb on - strand, within OH686_22660at 4597.232 kb on - strand, within OH686_22660at 4597.268 kb on + strand, within OH686_22660at 4597.269 kb on - strand, within OH686_22660at 4597.281 kb on + strand, within OH686_22660at 4597.281 kb on + strand, within OH686_22660at 4597.281 kb on + strand, within OH686_22660at 4597.281 kb on + strand, within OH686_22660at 4597.282 kb on - strand, within OH686_22660at 4597.282 kb on - strand, within OH686_22660at 4597.282 kb on - strand, within OH686_22660at 4597.282 kb on - strand, within OH686_22660at 4597.282 kb on - strand, within OH686_22660at 4597.282 kb on - strand, within OH686_22660at 4597.282 kb on - strand, within OH686_22660at 4597.282 kb on - strand, within OH686_22660at 4597.302 kb on - strand, within OH686_22660at 4597.341 kb on + strand, within OH686_22660at 4597.342 kb on - strand, within OH686_22660at 4597.342 kb on - strand, within OH686_22660at 4597.342 kb on - strand, within OH686_22660at 4597.342 kb on - strand, within OH686_22660at 4597.342 kb on - strand, within OH686_22660at 4597.342 kb on - strand, within OH686_22660at 4597.342 kb on - strand, within OH686_22660at 4597.359 kb on + strand, within OH686_22660at 4597.359 kb on + strand, within OH686_22660at 4597.360 kb on - strand, within OH686_22660at 4597.360 kb on - strand, within OH686_22660at 4597.360 kb on - strand, within OH686_22660at 4597.360 kb on - strand, within OH686_22660at 4597.515 kb on + strandat 4597.515 kb on + strandat 4597.515 kb on + strandat 4597.515 kb on + strandat 4597.515 kb on + strandat 4597.515 kb on + strandat 4597.515 kb on + strandat 4597.515 kb on + strandat 4597.516 kb on - strandat 4597.516 kb on - strandat 4597.516 kb on - strandat 4597.516 kb on - strandat 4597.516 kb on - strandat 4597.516 kb on - strandat 4597.516 kb on - strandat 4597.516 kb on - strandat 4597.516 kb on - strandat 4597.516 kb on - strandat 4597.563 kb on + strandat 4597.563 kb on + strandat 4597.564 kb on - strandat 4597.633 kb on + strandat 4597.633 kb on + strandat 4597.633 kb on + strandat 4597.633 kb on + strandat 4597.633 kb on + strandat 4597.633 kb on + strandat 4597.633 kb on + strandat 4597.633 kb on + strandat 4597.634 kb on - strandat 4597.634 kb on - strandat 4597.634 kb on - strandat 4597.756 kb on + strand, within OH686_22665at 4597.756 kb on + strand, within OH686_22665at 4597.756 kb on + strand, within OH686_22665at 4597.756 kb on + strand, within OH686_22665at 4597.757 kb on - strand, within OH686_22665at 4597.757 kb on - strand, within OH686_22665at 4597.757 kb on - strand, within OH686_22665at 4598.103 kb on + strand, within OH686_22665at 4598.103 kb on + strand, within OH686_22665at 4598.104 kb on - strand, within OH686_22665at 4598.145 kb on + strand, within OH686_22665at 4598.145 kb on + strand, within OH686_22665at 4598.145 kb on + strand, within OH686_22665at 4598.145 kb on + strand, within OH686_22665at 4598.146 kb on - strand, within OH686_22665at 4598.146 kb on - strand, within OH686_22665at 4598.185 kb on + strand, within OH686_22665at 4598.185 kb on + strand, within OH686_22665at 4598.185 kb on + strand, within OH686_22665at 4598.185 kb on + strand, within OH686_22665at 4598.185 kb on + strand, within OH686_22665at 4598.185 kb on + strand, within OH686_22665at 4598.186 kb on - strand, within OH686_22665at 4598.186 kb on - strand, within OH686_22665at 4598.186 kb on - strand, within OH686_22665at 4598.186 kb on - strand, within OH686_22665at 4598.186 kb on - strand, within OH686_22665at 4598.271 kb on - strand, within OH686_22665at 4598.271 kb on - strand, within OH686_22665at 4598.274 kb on + strand, within OH686_22665at 4598.275 kb on - strand, within OH686_22665at 4598.275 kb on - strand, within OH686_22665at 4598.275 kb on - strand, within OH686_22665at 4598.748 kb on - strandat 4598.748 kb on - strandat 4598.814 kb on - strandat 4598.814 kb on - strandat 4598.814 kb on - strandat 4598.814 kb on - strandat 4598.814 kb on - strandat 4599.092 kb on + strand, within OH686_22670at 4599.092 kb on + strand, within OH686_22670at 4599.092 kb on + strand, within OH686_22670at 4599.092 kb on + strand, within OH686_22670at 4599.092 kb on + strand, within OH686_22670at 4599.092 kb on + strand, within OH686_22670at 4599.092 kb on + strand, within OH686_22670at 4599.092 kb on + strand, within OH686_22670at 4599.092 kb on + strand, within OH686_22670at 4599.092 kb on + strand, within OH686_22670at 4599.092 kb on + strand, within OH686_22670at 4599.092 kb on + strand, within OH686_22670at 4599.092 kb on + strand, within OH686_22670at 4599.092 kb on + strand, within OH686_22670at 4599.092 kb on + strand, within OH686_22670at 4599.092 kb on + strand, within OH686_22670at 4599.093 kb on - strand, within OH686_22670at 4599.093 kb on - strand, within OH686_22670at 4599.093 kb on - strand, within OH686_22670at 4599.093 kb on - strand, within OH686_22670at 4599.093 kb on - strand, within OH686_22670at 4599.093 kb on - strand, within OH686_22670at 4599.093 kb on - strand, within OH686_22670at 4599.093 kb on - strand, within OH686_22670at 4599.093 kb on - strand, within OH686_22670at 4599.093 kb on - strand, within OH686_22670at 4599.093 kb on - strand, within OH686_22670at 4599.093 kb on - strand, within OH686_22670at 4599.206 kb on + strand, within OH686_22670at 4599.206 kb on + strand, within OH686_22670at 4599.206 kb on + strand, within OH686_22670at 4599.206 kb on + strand, within OH686_22670at 4599.206 kb on + strand, within OH686_22670at 4599.206 kb on + strand, within OH686_22670at 4599.207 kb on - strand, within OH686_22670at 4599.207 kb on - strand, within OH686_22670at 4599.207 kb on - strand, within OH686_22670at 4599.207 kb on - strand, within OH686_22670at 4599.207 kb on - strand, within OH686_22670at 4599.207 kb on - strand, within OH686_22670at 4599.207 kb on - strand, within OH686_22670at 4599.207 kb on - strand, within OH686_22670at 4599.207 kb on - strand, within OH686_22670at 4599.546 kb on + strand, within OH686_22670at 4599.547 kb on - strand, within OH686_22670at 4599.662 kb on + strand, within OH686_22670at 4599.662 kb on + strand, within OH686_22670at 4599.662 kb on + strand, within OH686_22670at 4599.662 kb on + strand, within OH686_22670at 4599.662 kb on + strand, within OH686_22670at 4599.663 kb on - strand, within OH686_22670at 4599.663 kb on - strand, within OH686_22670

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,596,906 + OH686_22660 0.15 +0.5
4,596,906 + OH686_22660 0.15 +1.1
4,596,906 + OH686_22660 0.15 -0.4
4,596,906 + OH686_22660 0.15 +0.3
4,596,906 + OH686_22660 0.15 -0.8
4,596,907 - OH686_22660 0.16 +0.5
4,596,907 - OH686_22660 0.16 +0.2
4,596,907 - OH686_22660 0.16 +0.4
4,596,907 - OH686_22660 0.16 +0.4
4,596,960 + OH686_22660 0.22 -1.5
4,596,960 + OH686_22660 0.22 +0.2
4,596,960 + OH686_22660 0.22 -1.2
4,596,966 + OH686_22660 0.23 +1.4
4,596,966 + OH686_22660 0.23 -0.8
4,596,966 + OH686_22660 0.23 +0.5
4,596,966 + OH686_22660 0.23 -0.2
4,596,966 + OH686_22660 0.23 +0.5
4,596,966 + OH686_22660 0.23 +0.5
4,596,966 + OH686_22660 0.23 -0.4
4,596,966 + OH686_22660 0.23 +0.3
4,596,967 - OH686_22660 0.23 -0.3
4,596,967 - OH686_22660 0.23 +0.3
4,596,967 - OH686_22660 0.23 -0.2
4,596,967 - OH686_22660 0.23 -1.4
4,596,967 - OH686_22660 0.23 +0.5
4,596,967 - OH686_22660 0.23 -0.8
4,596,967 - OH686_22660 0.23 -0.8
4,596,967 - OH686_22660 0.23 -1.1
4,596,967 - OH686_22660 0.23 -0.3
4,596,967 - OH686_22660 0.23 -0.0
4,596,967 - OH686_22660 0.23 -0.8
4,596,967 - OH686_22660 0.23 +0.3
4,597,020 + OH686_22660 0.30 +0.4
4,597,020 + OH686_22660 0.30 -0.2
4,597,020 + OH686_22660 0.30 -0.1
4,597,020 + OH686_22660 0.30 -0.4
4,597,020 + OH686_22660 0.30 -1.3
4,597,020 + OH686_22660 0.30 -0.7
4,597,021 - OH686_22660 0.30 +0.2
4,597,119 + OH686_22660 0.43 -0.2
4,597,120 - OH686_22660 0.43 -0.1
4,597,231 + OH686_22660 0.57 +0.5
4,597,232 - OH686_22660 0.57 +0.3
4,597,232 - OH686_22660 0.57 -0.1
4,597,232 - OH686_22660 0.57 -0.1
4,597,268 + OH686_22660 0.62 +0.5
4,597,269 - OH686_22660 0.62 +0.4
4,597,281 + OH686_22660 0.63 -0.1
4,597,281 + OH686_22660 0.63 -0.3
4,597,281 + OH686_22660 0.63 -0.3
4,597,281 + OH686_22660 0.63 +0.2
4,597,282 - OH686_22660 0.64 +0.8
4,597,282 - OH686_22660 0.64 -0.1
4,597,282 - OH686_22660 0.64 -0.9
4,597,282 - OH686_22660 0.64 -0.6
4,597,282 - OH686_22660 0.64 +0.8
4,597,282 - OH686_22660 0.64 +0.3
4,597,282 - OH686_22660 0.64 -0.7
4,597,282 - OH686_22660 0.64 -0.1
4,597,302 - OH686_22660 0.66 -0.1
4,597,341 + OH686_22660 0.71 +1.0
4,597,342 - OH686_22660 0.71 +0.9
4,597,342 - OH686_22660 0.71 -0.5
4,597,342 - OH686_22660 0.71 +0.7
4,597,342 - OH686_22660 0.71 +0.1
4,597,342 - OH686_22660 0.71 -0.3
4,597,342 - OH686_22660 0.71 -0.4
4,597,342 - OH686_22660 0.71 +0.6
4,597,359 + OH686_22660 0.73 +0.2
4,597,359 + OH686_22660 0.73 -0.2
4,597,360 - OH686_22660 0.74 +0.3
4,597,360 - OH686_22660 0.74 -1.1
4,597,360 - OH686_22660 0.74 -0.1
4,597,360 - OH686_22660 0.74 +0.4
4,597,515 + -0.7
4,597,515 + -1.4
4,597,515 + -0.2
4,597,515 + -0.9
4,597,515 + -0.4
4,597,515 + +0.7
4,597,515 + +0.1
4,597,515 + +0.0
4,597,516 - -0.7
4,597,516 - +0.0
4,597,516 - -1.1
4,597,516 - -0.6
4,597,516 - +0.1
4,597,516 - +0.7
4,597,516 - +0.1
4,597,516 - -0.4
4,597,516 - +0.2
4,597,516 - +0.5
4,597,563 + -1.3
4,597,563 + +0.2
4,597,564 - -0.6
4,597,633 + -0.7
4,597,633 + -1.1
4,597,633 + -0.1
4,597,633 + -0.6
4,597,633 + +0.5
4,597,633 + +0.2
4,597,633 + -0.4
4,597,633 + +0.5
4,597,634 - +1.0
4,597,634 - -2.0
4,597,634 - -0.7
4,597,756 + OH686_22665 0.11 +0.1
4,597,756 + OH686_22665 0.11 -0.7
4,597,756 + OH686_22665 0.11 -0.2
4,597,756 + OH686_22665 0.11 -0.3
4,597,757 - OH686_22665 0.11 +0.6
4,597,757 - OH686_22665 0.11 +0.1
4,597,757 - OH686_22665 0.11 -0.1
4,598,103 + OH686_22665 0.45 -1.1
4,598,103 + OH686_22665 0.45 +0.4
4,598,104 - OH686_22665 0.45 +1.3
4,598,145 + OH686_22665 0.49 +0.3
4,598,145 + OH686_22665 0.49 +0.3
4,598,145 + OH686_22665 0.49 -0.3
4,598,145 + OH686_22665 0.49 -0.1
4,598,146 - OH686_22665 0.49 -0.2
4,598,146 - OH686_22665 0.49 +0.0
4,598,185 + OH686_22665 0.53 -0.2
4,598,185 + OH686_22665 0.53 -0.2
4,598,185 + OH686_22665 0.53 -0.8
4,598,185 + OH686_22665 0.53 -0.3
4,598,185 + OH686_22665 0.53 -0.5
4,598,185 + OH686_22665 0.53 +0.5
4,598,186 - OH686_22665 0.53 +0.5
4,598,186 - OH686_22665 0.53 +0.5
4,598,186 - OH686_22665 0.53 -0.1
4,598,186 - OH686_22665 0.53 -1.6
4,598,186 - OH686_22665 0.53 -0.4
4,598,271 - OH686_22665 0.61 -0.0
4,598,271 - OH686_22665 0.61 -0.1
4,598,274 + OH686_22665 0.61 +0.8
4,598,275 - OH686_22665 0.62 +0.1
4,598,275 - OH686_22665 0.62 -0.1
4,598,275 - OH686_22665 0.62 -0.8
4,598,748 - +0.4
4,598,748 - +0.2
4,598,814 - +0.4
4,598,814 - -0.4
4,598,814 - -0.7
4,598,814 - +0.3
4,598,814 - -0.0
4,599,092 + OH686_22670 0.14 +0.1
4,599,092 + OH686_22670 0.14 -1.0
4,599,092 + OH686_22670 0.14 -0.6
4,599,092 + OH686_22670 0.14 -0.2
4,599,092 + OH686_22670 0.14 -3.1
4,599,092 + OH686_22670 0.14 -0.5
4,599,092 + OH686_22670 0.14 -0.1
4,599,092 + OH686_22670 0.14 -0.5
4,599,092 + OH686_22670 0.14 +0.1
4,599,092 + OH686_22670 0.14 -0.2
4,599,092 + OH686_22670 0.14 +1.0
4,599,092 + OH686_22670 0.14 -1.2
4,599,092 + OH686_22670 0.14 +0.3
4,599,092 + OH686_22670 0.14 -0.8
4,599,092 + OH686_22670 0.14 +0.9
4,599,092 + OH686_22670 0.14 +0.1
4,599,093 - OH686_22670 0.14 +0.0
4,599,093 - OH686_22670 0.14 -0.7
4,599,093 - OH686_22670 0.14 -0.4
4,599,093 - OH686_22670 0.14 +0.8
4,599,093 - OH686_22670 0.14 -0.4
4,599,093 - OH686_22670 0.14 +0.5
4,599,093 - OH686_22670 0.14 -0.1
4,599,093 - OH686_22670 0.14 +0.1
4,599,093 - OH686_22670 0.14 -0.7
4,599,093 - OH686_22670 0.14 -0.1
4,599,093 - OH686_22670 0.14 -0.4
4,599,093 - OH686_22670 0.14 +0.3
4,599,206 + OH686_22670 0.18 -1.0
4,599,206 + OH686_22670 0.18 -0.1
4,599,206 + OH686_22670 0.18 -0.6
4,599,206 + OH686_22670 0.18 +0.1
4,599,206 + OH686_22670 0.18 -0.1
4,599,206 + OH686_22670 0.18 -0.1
4,599,207 - OH686_22670 0.18 +0.9
4,599,207 - OH686_22670 0.18 -1.0
4,599,207 - OH686_22670 0.18 -0.2
4,599,207 - OH686_22670 0.18 +0.3
4,599,207 - OH686_22670 0.18 -0.5
4,599,207 - OH686_22670 0.18 -1.0
4,599,207 - OH686_22670 0.18 +0.8
4,599,207 - OH686_22670 0.18 +0.1
4,599,207 - OH686_22670 0.18 +0.6
4,599,546 + OH686_22670 0.29 -0.4
4,599,547 - OH686_22670 0.29 +0.6
4,599,662 + OH686_22670 0.33 -1.1
4,599,662 + OH686_22670 0.33 +0.8
4,599,662 + OH686_22670 0.33 -0.4
4,599,662 + OH686_22670 0.33 -0.3
4,599,662 + OH686_22670 0.33 -0.4
4,599,663 - OH686_22670 0.33 +0.1
4,599,663 - OH686_22670 0.33 -1.2

Or see this region's nucleotide sequence