Strain Fitness in Pseudomonas sp. S08-1 around OH686_08600

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_08595 and OH686_08600 are separated by 48 nucleotidesOH686_08600 and OH686_08605 are separated by 71 nucleotidesOH686_08605 and OH686_08610 overlap by 1 nucleotides OH686_08595: OH686_08595 - Ribonuclease G, at 1,747,267 to 1,748,724 _08595 OH686_08600: OH686_08600 - septum formation protein Maf, at 1,748,773 to 1,749,378 _08600 OH686_08605: OH686_08605 - rod shape-determining protein MreD, at 1,749,450 to 1,749,938 _08605 OH686_08610: OH686_08610 - rod shape-determining protein MreC, at 1,749,938 to 1,750,921 _08610 Position (kb) 1748 1749 1750Strain fitness (log2 ratio) -2 -1 0 1at 1747.959 kb on - strand, within OH686_08595at 1748.109 kb on - strand, within OH686_08595at 1748.109 kb on - strand, within OH686_08595at 1748.109 kb on - strand, within OH686_08595at 1748.109 kb on - strand, within OH686_08595at 1748.109 kb on - strand, within OH686_08595at 1748.109 kb on - strand, within OH686_08595at 1748.109 kb on - strand, within OH686_08595at 1748.233 kb on - strand, within OH686_08595at 1748.233 kb on - strand, within OH686_08595at 1748.358 kb on - strand, within OH686_08595at 1748.358 kb on - strand, within OH686_08595at 1748.358 kb on - strand, within OH686_08595at 1748.358 kb on - strand, within OH686_08595at 1748.358 kb on - strand, within OH686_08595at 1748.358 kb on - strand, within OH686_08595at 1748.358 kb on - strand, within OH686_08595at 1748.358 kb on - strand, within OH686_08595at 1748.358 kb on - strand, within OH686_08595at 1748.598 kb on + strandat 1748.598 kb on + strandat 1748.599 kb on - strandat 1748.601 kb on - strandat 1748.601 kb on - strandat 1748.601 kb on - strandat 1748.601 kb on - strandat 1748.601 kb on - strandat 1748.601 kb on - strandat 1748.601 kb on - strandat 1748.601 kb on - strandat 1748.601 kb on - strandat 1748.601 kb on - strandat 1748.601 kb on - strandat 1748.601 kb on - strandat 1748.601 kb on - strandat 1748.601 kb on - strandat 1748.601 kb on - strandat 1748.601 kb on - strandat 1748.601 kb on - strandat 1748.601 kb on - strandat 1748.601 kb on - strandat 1748.604 kb on + strandat 1748.604 kb on + strandat 1748.604 kb on + strandat 1748.604 kb on + strandat 1748.604 kb on + strandat 1748.605 kb on - strandat 1748.605 kb on - strandat 1748.605 kb on - strandat 1748.605 kb on - strandat 1748.605 kb on - strandat 1748.731 kb on + strandat 1748.731 kb on + strandat 1748.731 kb on + strandat 1748.731 kb on + strandat 1748.731 kb on + strandat 1748.732 kb on - strandat 1748.732 kb on - strandat 1748.732 kb on - strandat 1748.774 kb on + strandat 1748.774 kb on + strandat 1748.774 kb on + strandat 1748.774 kb on + strandat 1748.774 kb on + strandat 1748.775 kb on - strandat 1748.775 kb on - strandat 1748.794 kb on + strandat 1748.794 kb on + strandat 1748.795 kb on - strandat 1748.795 kb on - strandat 1748.795 kb on - strandat 1748.873 kb on + strand, within OH686_08600at 1748.873 kb on + strand, within OH686_08600at 1748.873 kb on + strand, within OH686_08600at 1748.873 kb on + strand, within OH686_08600at 1748.874 kb on - strand, within OH686_08600at 1748.919 kb on + strand, within OH686_08600at 1748.919 kb on + strand, within OH686_08600at 1748.919 kb on + strand, within OH686_08600at 1748.919 kb on + strand, within OH686_08600at 1748.920 kb on - strand, within OH686_08600at 1748.920 kb on - strand, within OH686_08600at 1748.920 kb on - strand, within OH686_08600at 1748.920 kb on - strand, within OH686_08600at 1748.920 kb on - strand, within OH686_08600at 1748.924 kb on + strand, within OH686_08600at 1748.924 kb on + strand, within OH686_08600at 1748.925 kb on - strand, within OH686_08600at 1748.925 kb on - strand, within OH686_08600at 1748.925 kb on - strand, within OH686_08600at 1748.925 kb on - strand, within OH686_08600at 1748.925 kb on - strand, within OH686_08600at 1748.925 kb on - strand, within OH686_08600at 1748.925 kb on - strand, within OH686_08600at 1748.925 kb on - strand, within OH686_08600at 1748.964 kb on - strand, within OH686_08600at 1748.964 kb on - strand, within OH686_08600at 1749.138 kb on + strand, within OH686_08600at 1749.138 kb on + strand, within OH686_08600at 1749.244 kb on + strand, within OH686_08600at 1749.244 kb on + strand, within OH686_08600at 1749.244 kb on + strand, within OH686_08600at 1749.244 kb on + strand, within OH686_08600at 1749.244 kb on + strand, within OH686_08600at 1749.244 kb on + strand, within OH686_08600at 1749.244 kb on + strand, within OH686_08600at 1749.244 kb on + strand, within OH686_08600at 1749.244 kb on + strand, within OH686_08600at 1749.244 kb on + strand, within OH686_08600at 1749.244 kb on + strand, within OH686_08600at 1749.244 kb on + strand, within OH686_08600at 1749.244 kb on + strand, within OH686_08600at 1749.245 kb on - strand, within OH686_08600at 1749.245 kb on - strand, within OH686_08600at 1749.245 kb on - strand, within OH686_08600at 1749.245 kb on - strand, within OH686_08600at 1749.245 kb on - strand, within OH686_08600at 1749.245 kb on - strand, within OH686_08600at 1749.245 kb on - strand, within OH686_08600at 1749.245 kb on - strand, within OH686_08600at 1749.245 kb on - strand, within OH686_08600at 1749.245 kb on - strand, within OH686_08600at 1749.245 kb on - strand, within OH686_08600at 1749.245 kb on - strand, within OH686_08600at 1749.245 kb on - strand, within OH686_08600at 1749.245 kb on - strand, within OH686_08600at 1749.245 kb on - strand, within OH686_08600at 1749.245 kb on - strand, within OH686_08600at 1749.248 kb on + strand, within OH686_08600at 1749.249 kb on - strand, within OH686_08600at 1749.249 kb on - strand, within OH686_08600at 1749.249 kb on - strand, within OH686_08600at 1749.613 kb on - strand, within OH686_08605at 1750.163 kb on + strand, within OH686_08610

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,747,959 - OH686_08595 0.47 -0.8
1,748,109 - OH686_08595 0.58 -0.2
1,748,109 - OH686_08595 0.58 -0.2
1,748,109 - OH686_08595 0.58 -1.4
1,748,109 - OH686_08595 0.58 -0.8
1,748,109 - OH686_08595 0.58 +0.5
1,748,109 - OH686_08595 0.58 -0.5
1,748,109 - OH686_08595 0.58 +0.2
1,748,233 - OH686_08595 0.66 -0.8
1,748,233 - OH686_08595 0.66 +0.4
1,748,358 - OH686_08595 0.75 -0.5
1,748,358 - OH686_08595 0.75 -1.5
1,748,358 - OH686_08595 0.75 -0.1
1,748,358 - OH686_08595 0.75 -0.4
1,748,358 - OH686_08595 0.75 +0.8
1,748,358 - OH686_08595 0.75 -1.0
1,748,358 - OH686_08595 0.75 +0.2
1,748,358 - OH686_08595 0.75 -0.3
1,748,358 - OH686_08595 0.75 -2.1
1,748,598 + +1.1
1,748,598 + -1.0
1,748,599 - +0.2
1,748,601 - +0.1
1,748,601 - +0.2
1,748,601 - -1.0
1,748,601 - -0.0
1,748,601 - -1.2
1,748,601 - -1.0
1,748,601 - -0.4
1,748,601 - -0.2
1,748,601 - +1.1
1,748,601 - +1.3
1,748,601 - -1.4
1,748,601 - -1.0
1,748,601 - -0.7
1,748,601 - +0.5
1,748,601 - +0.8
1,748,601 - -0.5
1,748,601 - +1.4
1,748,601 - -1.8
1,748,601 - -1.2
1,748,604 + -0.1
1,748,604 + -0.4
1,748,604 + -0.5
1,748,604 + -0.2
1,748,604 + +1.0
1,748,605 - -2.4
1,748,605 - +1.2
1,748,605 - +0.0
1,748,605 - -0.8
1,748,605 - +0.1
1,748,731 + -0.8
1,748,731 + -0.0
1,748,731 + -0.1
1,748,731 + +0.2
1,748,731 + -0.3
1,748,732 - -2.4
1,748,732 - -0.9
1,748,732 - -0.4
1,748,774 + -0.3
1,748,774 + +0.4
1,748,774 + +0.4
1,748,774 + -0.1
1,748,774 + -0.8
1,748,775 - -0.5
1,748,775 - -0.4
1,748,794 + -0.5
1,748,794 + -0.0
1,748,795 - +1.0
1,748,795 - -0.6
1,748,795 - +0.2
1,748,873 + OH686_08600 0.17 -1.1
1,748,873 + OH686_08600 0.17 +0.8
1,748,873 + OH686_08600 0.17 +0.1
1,748,873 + OH686_08600 0.17 -0.8
1,748,874 - OH686_08600 0.17 -0.3
1,748,919 + OH686_08600 0.24 +0.2
1,748,919 + OH686_08600 0.24 -0.9
1,748,919 + OH686_08600 0.24 -0.1
1,748,919 + OH686_08600 0.24 -0.6
1,748,920 - OH686_08600 0.24 -1.3
1,748,920 - OH686_08600 0.24 -0.5
1,748,920 - OH686_08600 0.24 -0.8
1,748,920 - OH686_08600 0.24 +0.2
1,748,920 - OH686_08600 0.24 -0.3
1,748,924 + OH686_08600 0.25 +0.3
1,748,924 + OH686_08600 0.25 +0.6
1,748,925 - OH686_08600 0.25 +0.3
1,748,925 - OH686_08600 0.25 -0.2
1,748,925 - OH686_08600 0.25 -0.7
1,748,925 - OH686_08600 0.25 +0.0
1,748,925 - OH686_08600 0.25 -0.0
1,748,925 - OH686_08600 0.25 -1.1
1,748,925 - OH686_08600 0.25 -0.1
1,748,925 - OH686_08600 0.25 -0.5
1,748,964 - OH686_08600 0.32 +0.6
1,748,964 - OH686_08600 0.32 -0.4
1,749,138 + OH686_08600 0.60 -0.7
1,749,138 + OH686_08600 0.60 +1.3
1,749,244 + OH686_08600 0.78 +0.8
1,749,244 + OH686_08600 0.78 +1.1
1,749,244 + OH686_08600 0.78 +0.2
1,749,244 + OH686_08600 0.78 -0.1
1,749,244 + OH686_08600 0.78 -0.8
1,749,244 + OH686_08600 0.78 +0.3
1,749,244 + OH686_08600 0.78 +0.3
1,749,244 + OH686_08600 0.78 +0.1
1,749,244 + OH686_08600 0.78 -0.4
1,749,244 + OH686_08600 0.78 -0.0
1,749,244 + OH686_08600 0.78 +0.3
1,749,244 + OH686_08600 0.78 -0.2
1,749,244 + OH686_08600 0.78 +0.0
1,749,245 - OH686_08600 0.78 +0.3
1,749,245 - OH686_08600 0.78 +0.5
1,749,245 - OH686_08600 0.78 +0.5
1,749,245 - OH686_08600 0.78 -0.2
1,749,245 - OH686_08600 0.78 -0.1
1,749,245 - OH686_08600 0.78 -0.4
1,749,245 - OH686_08600 0.78 -0.8
1,749,245 - OH686_08600 0.78 +0.1
1,749,245 - OH686_08600 0.78 +0.9
1,749,245 - OH686_08600 0.78 -0.6
1,749,245 - OH686_08600 0.78 +0.3
1,749,245 - OH686_08600 0.78 +0.1
1,749,245 - OH686_08600 0.78 -2.4
1,749,245 - OH686_08600 0.78 +0.1
1,749,245 - OH686_08600 0.78 -0.7
1,749,245 - OH686_08600 0.78 -0.4
1,749,248 + OH686_08600 0.78 +0.7
1,749,249 - OH686_08600 0.79 -0.3
1,749,249 - OH686_08600 0.79 -0.1
1,749,249 - OH686_08600 0.79 +0.6
1,749,613 - OH686_08605 0.33 -0.5
1,750,163 + OH686_08610 0.23 -1.1

Or see this region's nucleotide sequence