Strain Fitness in Pseudomonas sp. S08-1 around OH686_08525

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_08515 and OH686_08520 are separated by 0 nucleotidesOH686_08520 and OH686_08525 are separated by 9 nucleotidesOH686_08525 and OH686_08530 overlap by 14 nucleotidesOH686_08530 and OH686_08535 overlap by 1 nucleotides OH686_08515: OH686_08515 - D-arabinose-5-phosphate isomerase , at 1,731,934 to 1,732,908 _08515 OH686_08520: OH686_08520 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase , at 1,732,909 to 1,733,433 _08520 OH686_08525: OH686_08525 - LPS export ABC transporter periplasmic protein LptC, at 1,733,443 to 1,734,012 _08525 OH686_08530: OH686_08530 - lipopolysaccharide transport periplasmic protein LptA, at 1,733,999 to 1,734,544 _08530 OH686_08535: OH686_08535 - LPS export ABC transporter ATP-binding protein, at 1,734,544 to 1,735,269 _08535 Position (kb) 1733 1734 1735Strain fitness (log2 ratio) -3 -2 -1 0 1at 1732.901 kb on + strandat 1732.901 kb on + strandat 1732.906 kb on + strandat 1732.906 kb on + strandat 1733.431 kb on + strandat 1733.431 kb on + strandat 1733.431 kb on + strandat 1733.431 kb on + strandat 1733.431 kb on + strandat 1733.861 kb on + strand, within OH686_08525at 1733.861 kb on + strand, within OH686_08525at 1733.861 kb on + strand, within OH686_08525at 1733.861 kb on + strand, within OH686_08525at 1733.878 kb on + strand, within OH686_08525at 1733.878 kb on + strand, within OH686_08525at 1733.987 kb on + strandat 1733.987 kb on + strandat 1733.987 kb on + strandat 1733.987 kb on + strandat 1733.987 kb on + strandat 1733.987 kb on + strandat 1733.987 kb on + strandat 1733.987 kb on + strandat 1733.987 kb on + strandat 1733.987 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,732,901 + -0.6
1,732,901 + +0.2
1,732,906 + +0.6
1,732,906 + -0.3
1,733,431 + -0.7
1,733,431 + +0.6
1,733,431 + +0.0
1,733,431 + +0.1
1,733,431 + -0.5
1,733,861 + OH686_08525 0.73 -0.7
1,733,861 + OH686_08525 0.73 -1.4
1,733,861 + OH686_08525 0.73 -1.5
1,733,861 + OH686_08525 0.73 +0.1
1,733,878 + OH686_08525 0.76 -3.2
1,733,878 + OH686_08525 0.76 -0.8
1,733,987 + +0.6
1,733,987 + -0.1
1,733,987 + +0.5
1,733,987 + -1.0
1,733,987 + +0.4
1,733,987 + -2.2
1,733,987 + +0.2
1,733,987 + -1.1
1,733,987 + +0.1
1,733,987 + +1.0

Or see this region's nucleotide sequence