Strain Fitness in Pseudomonas sp. S08-1 around OH686_08195

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_08190 and OH686_08195 overlap by 2 nucleotidesOH686_08195 and OH686_08200 are separated by 38 nucleotides OH686_08190: OH686_08190 - Peptide chain release factor RF-3, at 1,666,762 to 1,667,757 _08190 OH686_08195: OH686_08195 - DNA base-flipping protein, at 1,667,756 to 1,668,148 _08195 OH686_08200: OH686_08200 - AmpG permease, at 1,668,187 to 1,669,797 _08200 Position (kb) 1667 1668 1669Strain fitness (log2 ratio) -3 -2 -1 0 1at 1666.790 kb on + strandat 1666.790 kb on + strandat 1666.790 kb on + strandat 1666.791 kb on - strandat 1666.791 kb on - strandat 1666.791 kb on - strandat 1666.841 kb on + strandat 1666.841 kb on + strandat 1666.842 kb on - strandat 1666.842 kb on - strandat 1666.842 kb on - strandat 1666.907 kb on + strand, within OH686_08190at 1666.907 kb on + strand, within OH686_08190at 1666.907 kb on + strand, within OH686_08190at 1666.907 kb on + strand, within OH686_08190at 1666.907 kb on + strand, within OH686_08190at 1666.907 kb on + strand, within OH686_08190at 1666.907 kb on + strand, within OH686_08190at 1666.907 kb on + strand, within OH686_08190at 1666.908 kb on - strand, within OH686_08190at 1666.908 kb on - strand, within OH686_08190at 1666.908 kb on - strand, within OH686_08190at 1666.908 kb on - strand, within OH686_08190at 1666.908 kb on - strand, within OH686_08190at 1666.908 kb on - strand, within OH686_08190at 1666.908 kb on - strand, within OH686_08190at 1666.908 kb on - strand, within OH686_08190at 1666.908 kb on - strand, within OH686_08190at 1666.908 kb on - strand, within OH686_08190at 1666.908 kb on - strand, within OH686_08190at 1666.908 kb on - strand, within OH686_08190at 1666.908 kb on - strand, within OH686_08190at 1666.908 kb on - strand, within OH686_08190at 1666.952 kb on + strand, within OH686_08190at 1666.952 kb on + strand, within OH686_08190at 1666.952 kb on + strand, within OH686_08190at 1666.952 kb on + strand, within OH686_08190at 1666.953 kb on - strand, within OH686_08190at 1666.953 kb on - strand, within OH686_08190at 1666.988 kb on + strand, within OH686_08190at 1666.988 kb on + strand, within OH686_08190at 1666.988 kb on + strand, within OH686_08190at 1666.988 kb on + strand, within OH686_08190at 1666.989 kb on - strand, within OH686_08190at 1666.989 kb on - strand, within OH686_08190at 1666.989 kb on - strand, within OH686_08190at 1666.989 kb on - strand, within OH686_08190at 1667.142 kb on + strand, within OH686_08190at 1667.142 kb on + strand, within OH686_08190at 1667.142 kb on + strand, within OH686_08190at 1667.142 kb on + strand, within OH686_08190at 1667.143 kb on - strand, within OH686_08190at 1667.143 kb on - strand, within OH686_08190at 1667.143 kb on - strand, within OH686_08190at 1667.143 kb on - strand, within OH686_08190at 1667.143 kb on - strand, within OH686_08190at 1667.143 kb on - strand, within OH686_08190at 1667.171 kb on + strand, within OH686_08190at 1667.219 kb on + strand, within OH686_08190at 1667.220 kb on - strand, within OH686_08190at 1667.220 kb on - strand, within OH686_08190at 1667.220 kb on - strand, within OH686_08190at 1667.220 kb on - strand, within OH686_08190at 1667.615 kb on + strand, within OH686_08190at 1667.615 kb on + strand, within OH686_08190at 1667.615 kb on + strand, within OH686_08190at 1667.615 kb on + strand, within OH686_08190at 1667.615 kb on + strand, within OH686_08190at 1667.615 kb on + strand, within OH686_08190at 1667.615 kb on + strand, within OH686_08190at 1667.615 kb on + strand, within OH686_08190at 1667.615 kb on + strand, within OH686_08190at 1667.615 kb on + strand, within OH686_08190at 1667.615 kb on + strand, within OH686_08190at 1667.615 kb on + strand, within OH686_08190at 1667.615 kb on + strand, within OH686_08190at 1667.615 kb on + strand, within OH686_08190at 1667.615 kb on + strand, within OH686_08190at 1667.615 kb on + strand, within OH686_08190at 1667.615 kb on + strand, within OH686_08190at 1667.615 kb on + strand, within OH686_08190at 1667.615 kb on + strand, within OH686_08190at 1667.615 kb on + strand, within OH686_08190at 1667.615 kb on + strand, within OH686_08190at 1667.616 kb on - strand, within OH686_08190at 1667.616 kb on - strand, within OH686_08190at 1667.616 kb on - strand, within OH686_08190at 1667.616 kb on - strand, within OH686_08190at 1667.616 kb on - strand, within OH686_08190at 1667.616 kb on - strand, within OH686_08190at 1667.616 kb on - strand, within OH686_08190at 1667.616 kb on - strand, within OH686_08190at 1667.616 kb on - strand, within OH686_08190at 1667.616 kb on - strand, within OH686_08190at 1667.616 kb on - strand, within OH686_08190at 1667.616 kb on - strand, within OH686_08190at 1667.616 kb on - strand, within OH686_08190at 1667.852 kb on + strand, within OH686_08195at 1667.852 kb on + strand, within OH686_08195at 1667.852 kb on + strand, within OH686_08195at 1667.853 kb on - strand, within OH686_08195at 1667.853 kb on - strand, within OH686_08195at 1667.853 kb on - strand, within OH686_08195at 1667.853 kb on - strand, within OH686_08195at 1667.853 kb on - strand, within OH686_08195at 1667.853 kb on - strand, within OH686_08195at 1667.894 kb on + strand, within OH686_08195at 1667.894 kb on + strand, within OH686_08195at 1667.894 kb on + strand, within OH686_08195at 1667.895 kb on - strand, within OH686_08195at 1667.895 kb on - strand, within OH686_08195at 1667.895 kb on - strand, within OH686_08195at 1667.895 kb on - strand, within OH686_08195at 1667.895 kb on - strand, within OH686_08195at 1667.895 kb on - strand, within OH686_08195at 1667.895 kb on - strand, within OH686_08195at 1667.895 kb on - strand, within OH686_08195at 1668.195 kb on + strandat 1668.195 kb on + strandat 1668.223 kb on + strandat 1668.223 kb on + strandat 1668.223 kb on + strandat 1668.223 kb on + strandat 1668.223 kb on + strandat 1668.223 kb on + strandat 1668.223 kb on + strandat 1668.223 kb on + strandat 1668.223 kb on + strandat 1668.223 kb on + strandat 1668.224 kb on - strandat 1668.224 kb on - strandat 1668.224 kb on - strandat 1668.224 kb on - strandat 1668.224 kb on - strandat 1668.224 kb on - strandat 1668.224 kb on - strandat 1668.224 kb on - strandat 1668.224 kb on - strandat 1668.280 kb on + strandat 1668.280 kb on + strandat 1668.280 kb on + strandat 1668.281 kb on - strandat 1668.281 kb on - strandat 1668.281 kb on - strandat 1668.281 kb on - strandat 1668.281 kb on - strandat 1668.374 kb on - strand, within OH686_08200at 1668.374 kb on - strand, within OH686_08200at 1668.649 kb on + strand, within OH686_08200at 1668.649 kb on + strand, within OH686_08200at 1668.649 kb on + strand, within OH686_08200at 1668.649 kb on + strand, within OH686_08200at 1668.649 kb on + strand, within OH686_08200at 1668.649 kb on + strand, within OH686_08200at 1668.649 kb on + strand, within OH686_08200at 1668.649 kb on + strand, within OH686_08200at 1668.649 kb on + strand, within OH686_08200at 1668.649 kb on + strand, within OH686_08200at 1668.649 kb on + strand, within OH686_08200at 1668.649 kb on + strand, within OH686_08200at 1668.649 kb on + strand, within OH686_08200at 1668.649 kb on + strand, within OH686_08200at 1668.649 kb on + strand, within OH686_08200at 1668.649 kb on + strand, within OH686_08200at 1668.649 kb on + strand, within OH686_08200at 1668.649 kb on + strand, within OH686_08200at 1668.650 kb on - strand, within OH686_08200at 1668.650 kb on - strand, within OH686_08200at 1668.650 kb on - strand, within OH686_08200at 1668.650 kb on - strand, within OH686_08200at 1668.650 kb on - strand, within OH686_08200at 1668.650 kb on - strand, within OH686_08200at 1668.650 kb on - strand, within OH686_08200at 1668.650 kb on - strand, within OH686_08200at 1668.650 kb on - strand, within OH686_08200at 1668.650 kb on - strand, within OH686_08200at 1668.650 kb on - strand, within OH686_08200at 1668.650 kb on - strand, within OH686_08200at 1668.650 kb on - strand, within OH686_08200at 1668.650 kb on - strand, within OH686_08200at 1668.701 kb on - strand, within OH686_08200at 1668.701 kb on - strand, within OH686_08200at 1668.701 kb on - strand, within OH686_08200at 1668.701 kb on - strand, within OH686_08200at 1668.701 kb on - strand, within OH686_08200at 1668.759 kb on + strand, within OH686_08200at 1668.759 kb on + strand, within OH686_08200at 1668.759 kb on + strand, within OH686_08200at 1668.759 kb on + strand, within OH686_08200at 1668.759 kb on + strand, within OH686_08200at 1668.759 kb on + strand, within OH686_08200at 1668.759 kb on + strand, within OH686_08200at 1668.760 kb on - strand, within OH686_08200at 1668.760 kb on - strand, within OH686_08200at 1668.760 kb on - strand, within OH686_08200at 1668.760 kb on - strand, within OH686_08200at 1668.760 kb on - strand, within OH686_08200at 1668.763 kb on + strand, within OH686_08200at 1668.763 kb on + strand, within OH686_08200at 1668.763 kb on + strand, within OH686_08200at 1668.763 kb on + strand, within OH686_08200at 1668.763 kb on + strand, within OH686_08200at 1668.763 kb on + strand, within OH686_08200at 1668.763 kb on + strand, within OH686_08200at 1668.763 kb on + strand, within OH686_08200at 1668.763 kb on + strand, within OH686_08200at 1668.763 kb on + strand, within OH686_08200at 1668.763 kb on + strand, within OH686_08200at 1668.764 kb on - strand, within OH686_08200at 1668.764 kb on - strand, within OH686_08200at 1668.764 kb on - strand, within OH686_08200at 1668.764 kb on - strand, within OH686_08200at 1668.764 kb on - strand, within OH686_08200at 1669.033 kb on + strand, within OH686_08200at 1669.033 kb on + strand, within OH686_08200at 1669.033 kb on + strand, within OH686_08200at 1669.033 kb on + strand, within OH686_08200at 1669.033 kb on + strand, within OH686_08200at 1669.033 kb on + strand, within OH686_08200at 1669.033 kb on + strand, within OH686_08200at 1669.033 kb on + strand, within OH686_08200at 1669.033 kb on + strand, within OH686_08200at 1669.033 kb on + strand, within OH686_08200at 1669.034 kb on - strand, within OH686_08200at 1669.034 kb on - strand, within OH686_08200at 1669.034 kb on - strand, within OH686_08200at 1669.034 kb on - strand, within OH686_08200at 1669.034 kb on - strand, within OH686_08200at 1669.034 kb on - strand, within OH686_08200at 1669.034 kb on - strand, within OH686_08200

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,666,790 + -0.5
1,666,790 + -0.1
1,666,790 + -0.6
1,666,791 - +0.1
1,666,791 - +1.3
1,666,791 - +0.3
1,666,841 + +0.8
1,666,841 + +0.5
1,666,842 - +1.0
1,666,842 - -0.1
1,666,842 - -0.0
1,666,907 + OH686_08190 0.15 +0.3
1,666,907 + OH686_08190 0.15 -0.3
1,666,907 + OH686_08190 0.15 +0.7
1,666,907 + OH686_08190 0.15 +0.4
1,666,907 + OH686_08190 0.15 +0.3
1,666,907 + OH686_08190 0.15 -0.2
1,666,907 + OH686_08190 0.15 -1.2
1,666,907 + OH686_08190 0.15 -0.0
1,666,908 - OH686_08190 0.15 -0.9
1,666,908 - OH686_08190 0.15 -1.0
1,666,908 - OH686_08190 0.15 +0.2
1,666,908 - OH686_08190 0.15 +0.2
1,666,908 - OH686_08190 0.15 +1.0
1,666,908 - OH686_08190 0.15 -0.1
1,666,908 - OH686_08190 0.15 +0.4
1,666,908 - OH686_08190 0.15 +0.4
1,666,908 - OH686_08190 0.15 -0.4
1,666,908 - OH686_08190 0.15 -0.9
1,666,908 - OH686_08190 0.15 -0.1
1,666,908 - OH686_08190 0.15 -0.7
1,666,908 - OH686_08190 0.15 -1.1
1,666,908 - OH686_08190 0.15 -1.0
1,666,952 + OH686_08190 0.19 -0.5
1,666,952 + OH686_08190 0.19 -2.6
1,666,952 + OH686_08190 0.19 -0.1
1,666,952 + OH686_08190 0.19 +0.3
1,666,953 - OH686_08190 0.19 -0.9
1,666,953 - OH686_08190 0.19 -0.5
1,666,988 + OH686_08190 0.23 +0.3
1,666,988 + OH686_08190 0.23 +0.2
1,666,988 + OH686_08190 0.23 -0.5
1,666,988 + OH686_08190 0.23 +0.1
1,666,989 - OH686_08190 0.23 -0.1
1,666,989 - OH686_08190 0.23 +0.1
1,666,989 - OH686_08190 0.23 +0.5
1,666,989 - OH686_08190 0.23 -0.2
1,667,142 + OH686_08190 0.38 -0.2
1,667,142 + OH686_08190 0.38 -1.0
1,667,142 + OH686_08190 0.38 +0.6
1,667,142 + OH686_08190 0.38 +0.8
1,667,143 - OH686_08190 0.38 -0.5
1,667,143 - OH686_08190 0.38 +0.9
1,667,143 - OH686_08190 0.38 -0.8
1,667,143 - OH686_08190 0.38 +0.3
1,667,143 - OH686_08190 0.38 -1.2
1,667,143 - OH686_08190 0.38 -0.4
1,667,171 + OH686_08190 0.41 +1.0
1,667,219 + OH686_08190 0.46 -0.1
1,667,220 - OH686_08190 0.46 -0.7
1,667,220 - OH686_08190 0.46 -0.5
1,667,220 - OH686_08190 0.46 -0.9
1,667,220 - OH686_08190 0.46 -0.2
1,667,615 + OH686_08190 0.86 +0.7
1,667,615 + OH686_08190 0.86 +0.2
1,667,615 + OH686_08190 0.86 -0.9
1,667,615 + OH686_08190 0.86 -0.3
1,667,615 + OH686_08190 0.86 -0.3
1,667,615 + OH686_08190 0.86 -0.4
1,667,615 + OH686_08190 0.86 +0.2
1,667,615 + OH686_08190 0.86 -0.6
1,667,615 + OH686_08190 0.86 -0.9
1,667,615 + OH686_08190 0.86 +0.5
1,667,615 + OH686_08190 0.86 +0.5
1,667,615 + OH686_08190 0.86 +1.4
1,667,615 + OH686_08190 0.86 -0.3
1,667,615 + OH686_08190 0.86 +0.2
1,667,615 + OH686_08190 0.86 +0.0
1,667,615 + OH686_08190 0.86 +0.6
1,667,615 + OH686_08190 0.86 +1.1
1,667,615 + OH686_08190 0.86 -1.9
1,667,615 + OH686_08190 0.86 -0.3
1,667,615 + OH686_08190 0.86 +0.4
1,667,615 + OH686_08190 0.86 +0.3
1,667,616 - OH686_08190 0.86 -1.2
1,667,616 - OH686_08190 0.86 +0.8
1,667,616 - OH686_08190 0.86 +1.2
1,667,616 - OH686_08190 0.86 +0.6
1,667,616 - OH686_08190 0.86 -0.5
1,667,616 - OH686_08190 0.86 +0.4
1,667,616 - OH686_08190 0.86 +0.2
1,667,616 - OH686_08190 0.86 -0.4
1,667,616 - OH686_08190 0.86 -0.2
1,667,616 - OH686_08190 0.86 +0.1
1,667,616 - OH686_08190 0.86 -0.0
1,667,616 - OH686_08190 0.86 -1.1
1,667,616 - OH686_08190 0.86 -1.0
1,667,852 + OH686_08195 0.24 -2.3
1,667,852 + OH686_08195 0.24 +0.4
1,667,852 + OH686_08195 0.24 -0.4
1,667,853 - OH686_08195 0.25 -1.5
1,667,853 - OH686_08195 0.25 +0.4
1,667,853 - OH686_08195 0.25 -1.0
1,667,853 - OH686_08195 0.25 -0.4
1,667,853 - OH686_08195 0.25 -0.4
1,667,853 - OH686_08195 0.25 -0.6
1,667,894 + OH686_08195 0.35 -0.6
1,667,894 + OH686_08195 0.35 -0.1
1,667,894 + OH686_08195 0.35 +1.3
1,667,895 - OH686_08195 0.35 +1.1
1,667,895 - OH686_08195 0.35 -0.1
1,667,895 - OH686_08195 0.35 -0.6
1,667,895 - OH686_08195 0.35 -0.1
1,667,895 - OH686_08195 0.35 +0.2
1,667,895 - OH686_08195 0.35 -0.3
1,667,895 - OH686_08195 0.35 +1.5
1,667,895 - OH686_08195 0.35 -0.8
1,668,195 + -0.3
1,668,195 + +0.8
1,668,223 + -1.2
1,668,223 + -0.6
1,668,223 + -0.3
1,668,223 + +0.2
1,668,223 + -0.8
1,668,223 + -1.3
1,668,223 + -1.2
1,668,223 + -1.2
1,668,223 + -1.1
1,668,223 + -0.0
1,668,224 - -1.0
1,668,224 - +0.0
1,668,224 - -3.7
1,668,224 - -1.3
1,668,224 - +0.2
1,668,224 - -1.4
1,668,224 - -0.7
1,668,224 - -0.7
1,668,224 - +1.1
1,668,280 + -0.6
1,668,280 + -0.9
1,668,280 + +0.7
1,668,281 - -1.1
1,668,281 - -0.7
1,668,281 - -0.7
1,668,281 - -0.7
1,668,281 - +0.1
1,668,374 - OH686_08200 0.12 -0.7
1,668,374 - OH686_08200 0.12 -0.5
1,668,649 + OH686_08200 0.29 -1.7
1,668,649 + OH686_08200 0.29 +1.2
1,668,649 + OH686_08200 0.29 -0.6
1,668,649 + OH686_08200 0.29 -1.4
1,668,649 + OH686_08200 0.29 -0.7
1,668,649 + OH686_08200 0.29 -0.6
1,668,649 + OH686_08200 0.29 -0.6
1,668,649 + OH686_08200 0.29 -0.0
1,668,649 + OH686_08200 0.29 -0.5
1,668,649 + OH686_08200 0.29 +0.4
1,668,649 + OH686_08200 0.29 -0.8
1,668,649 + OH686_08200 0.29 -0.1
1,668,649 + OH686_08200 0.29 -0.3
1,668,649 + OH686_08200 0.29 +0.9
1,668,649 + OH686_08200 0.29 -0.0
1,668,649 + OH686_08200 0.29 -0.4
1,668,649 + OH686_08200 0.29 -1.3
1,668,649 + OH686_08200 0.29 -0.0
1,668,650 - OH686_08200 0.29 -0.1
1,668,650 - OH686_08200 0.29 -1.8
1,668,650 - OH686_08200 0.29 -0.3
1,668,650 - OH686_08200 0.29 -0.7
1,668,650 - OH686_08200 0.29 -0.4
1,668,650 - OH686_08200 0.29 -1.1
1,668,650 - OH686_08200 0.29 -1.2
1,668,650 - OH686_08200 0.29 -1.0
1,668,650 - OH686_08200 0.29 -0.5
1,668,650 - OH686_08200 0.29 +0.2
1,668,650 - OH686_08200 0.29 +0.1
1,668,650 - OH686_08200 0.29 -1.2
1,668,650 - OH686_08200 0.29 -1.6
1,668,650 - OH686_08200 0.29 -1.5
1,668,701 - OH686_08200 0.32 -0.1
1,668,701 - OH686_08200 0.32 -0.3
1,668,701 - OH686_08200 0.32 -0.4
1,668,701 - OH686_08200 0.32 -1.4
1,668,701 - OH686_08200 0.32 -0.8
1,668,759 + OH686_08200 0.36 +0.3
1,668,759 + OH686_08200 0.36 -1.4
1,668,759 + OH686_08200 0.36 -0.8
1,668,759 + OH686_08200 0.36 -0.2
1,668,759 + OH686_08200 0.36 -0.9
1,668,759 + OH686_08200 0.36 -0.7
1,668,759 + OH686_08200 0.36 -0.9
1,668,760 - OH686_08200 0.36 -1.4
1,668,760 - OH686_08200 0.36 +0.3
1,668,760 - OH686_08200 0.36 -0.7
1,668,760 - OH686_08200 0.36 -0.7
1,668,760 - OH686_08200 0.36 -1.0
1,668,763 + OH686_08200 0.36 -0.2
1,668,763 + OH686_08200 0.36 -0.7
1,668,763 + OH686_08200 0.36 -0.4
1,668,763 + OH686_08200 0.36 -0.9
1,668,763 + OH686_08200 0.36 -0.9
1,668,763 + OH686_08200 0.36 -0.9
1,668,763 + OH686_08200 0.36 +0.6
1,668,763 + OH686_08200 0.36 -0.0
1,668,763 + OH686_08200 0.36 -1.1
1,668,763 + OH686_08200 0.36 -1.2
1,668,763 + OH686_08200 0.36 -1.3
1,668,764 - OH686_08200 0.36 -0.5
1,668,764 - OH686_08200 0.36 -0.7
1,668,764 - OH686_08200 0.36 +0.2
1,668,764 - OH686_08200 0.36 -0.8
1,668,764 - OH686_08200 0.36 -0.8
1,669,033 + OH686_08200 0.53 -0.0
1,669,033 + OH686_08200 0.53 -0.6
1,669,033 + OH686_08200 0.53 -0.6
1,669,033 + OH686_08200 0.53 -0.2
1,669,033 + OH686_08200 0.53 +0.4
1,669,033 + OH686_08200 0.53 -0.1
1,669,033 + OH686_08200 0.53 -0.6
1,669,033 + OH686_08200 0.53 -0.9
1,669,033 + OH686_08200 0.53 -0.6
1,669,033 + OH686_08200 0.53 -1.0
1,669,034 - OH686_08200 0.53 -1.2
1,669,034 - OH686_08200 0.53 -1.3
1,669,034 - OH686_08200 0.53 -1.3
1,669,034 - OH686_08200 0.53 -0.7
1,669,034 - OH686_08200 0.53 -0.3
1,669,034 - OH686_08200 0.53 -0.3
1,669,034 - OH686_08200 0.53 -1.2

Or see this region's nucleotide sequence