Strain Fitness in Pseudomonas sp. S08-1 around OH686_02770

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02760 and OH686_02765 overlap by 1 nucleotidesOH686_02765 and OH686_02770 are separated by 11 nucleotidesOH686_02770 and OH686_02775 overlap by 4 nucleotidesOH686_02775 and OH686_02780 are separated by 4 nucleotides OH686_02760: OH686_02760 - flagellar biosynthetic protein FliR, at 582,262 to 583,038 _02760 OH686_02765: OH686_02765 - flagellar biosynthetic protein FliQ, at 583,038 to 583,307 _02765 OH686_02770: OH686_02770 - flagellar biosynthetic protein FliP, at 583,319 to 584,074 _02770 OH686_02775: OH686_02775 - flagellar biosynthetic protein FliO, at 584,071 to 584,511 _02775 OH686_02780: OH686_02780 - Flagellar motor switch protein FliN, at 584,516 to 584,992 _02780 Position (kb) 583 584 585Strain fitness (log2 ratio) -1 0 1 2at 582.370 kb on + strand, within OH686_02760at 582.429 kb on + strand, within OH686_02760at 582.430 kb on - strand, within OH686_02760at 582.430 kb on - strand, within OH686_02760at 582.533 kb on + strand, within OH686_02760at 582.533 kb on + strand, within OH686_02760at 582.534 kb on - strand, within OH686_02760at 582.534 kb on - strand, within OH686_02760at 582.764 kb on + strand, within OH686_02760at 582.764 kb on + strand, within OH686_02760at 582.764 kb on + strand, within OH686_02760at 582.764 kb on + strand, within OH686_02760at 582.764 kb on + strand, within OH686_02760at 582.764 kb on + strand, within OH686_02760at 582.764 kb on + strand, within OH686_02760at 582.764 kb on + strand, within OH686_02760at 582.764 kb on + strand, within OH686_02760at 582.764 kb on + strand, within OH686_02760at 582.765 kb on - strand, within OH686_02760at 582.765 kb on - strand, within OH686_02760at 582.765 kb on - strand, within OH686_02760at 582.765 kb on - strand, within OH686_02760at 582.765 kb on - strand, within OH686_02760at 582.765 kb on - strand, within OH686_02760at 582.765 kb on - strand, within OH686_02760at 582.765 kb on - strand, within OH686_02760at 582.905 kb on + strand, within OH686_02760at 582.905 kb on + strand, within OH686_02760at 582.905 kb on + strand, within OH686_02760at 582.905 kb on + strand, within OH686_02760at 582.905 kb on + strand, within OH686_02760at 582.905 kb on + strand, within OH686_02760at 582.906 kb on - strand, within OH686_02760at 582.906 kb on - strand, within OH686_02760at 582.906 kb on - strand, within OH686_02760at 582.992 kb on + strandat 582.992 kb on + strandat 582.992 kb on + strandat 582.993 kb on - strandat 582.993 kb on - strandat 582.993 kb on - strandat 582.993 kb on - strandat 583.066 kb on - strand, within OH686_02765at 583.066 kb on - strand, within OH686_02765at 583.081 kb on + strand, within OH686_02765at 583.081 kb on + strand, within OH686_02765at 583.081 kb on + strand, within OH686_02765at 583.081 kb on + strand, within OH686_02765at 583.081 kb on + strand, within OH686_02765at 583.081 kb on + strand, within OH686_02765at 583.081 kb on + strand, within OH686_02765at 583.082 kb on - strand, within OH686_02765at 583.082 kb on - strand, within OH686_02765at 583.082 kb on - strand, within OH686_02765at 583.082 kb on - strand, within OH686_02765at 583.082 kb on - strand, within OH686_02765at 583.082 kb on - strand, within OH686_02765at 583.082 kb on - strand, within OH686_02765at 583.082 kb on - strand, within OH686_02765at 583.090 kb on - strand, within OH686_02765at 583.090 kb on - strand, within OH686_02765at 583.090 kb on - strand, within OH686_02765at 583.090 kb on - strand, within OH686_02765at 583.090 kb on - strand, within OH686_02765at 583.320 kb on + strandat 583.320 kb on + strandat 583.320 kb on + strandat 583.320 kb on + strandat 583.320 kb on + strandat 583.320 kb on + strandat 583.320 kb on + strandat 583.320 kb on + strandat 583.320 kb on + strandat 583.320 kb on + strandat 583.320 kb on + strandat 583.320 kb on + strandat 583.320 kb on + strandat 583.320 kb on + strandat 583.320 kb on + strandat 583.320 kb on + strandat 583.321 kb on - strandat 583.321 kb on - strandat 583.321 kb on - strandat 583.321 kb on - strandat 583.321 kb on - strandat 583.321 kb on - strandat 583.321 kb on - strandat 583.321 kb on - strandat 583.322 kb on + strandat 583.322 kb on + strandat 583.322 kb on + strandat 583.322 kb on + strandat 583.323 kb on - strandat 583.396 kb on + strand, within OH686_02770at 583.396 kb on + strand, within OH686_02770at 583.397 kb on - strand, within OH686_02770at 583.397 kb on - strand, within OH686_02770at 583.435 kb on + strand, within OH686_02770at 583.435 kb on + strand, within OH686_02770at 583.435 kb on + strand, within OH686_02770at 583.435 kb on + strand, within OH686_02770at 583.435 kb on + strand, within OH686_02770at 583.435 kb on + strand, within OH686_02770at 583.435 kb on + strand, within OH686_02770at 583.436 kb on - strand, within OH686_02770at 583.436 kb on - strand, within OH686_02770at 583.713 kb on + strand, within OH686_02770at 583.713 kb on + strand, within OH686_02770at 583.713 kb on + strand, within OH686_02770at 583.736 kb on - strand, within OH686_02770at 583.947 kb on + strand, within OH686_02770at 583.947 kb on + strand, within OH686_02770at 583.948 kb on - strand, within OH686_02770at 584.161 kb on + strand, within OH686_02775at 584.161 kb on + strand, within OH686_02775at 584.239 kb on + strand, within OH686_02775at 584.239 kb on + strand, within OH686_02775at 584.240 kb on - strand, within OH686_02775at 584.240 kb on - strand, within OH686_02775at 584.594 kb on + strand, within OH686_02780at 584.594 kb on + strand, within OH686_02780at 584.594 kb on + strand, within OH686_02780at 584.595 kb on - strand, within OH686_02780at 584.595 kb on - strand, within OH686_02780at 584.595 kb on - strand, within OH686_02780at 584.595 kb on - strand, within OH686_02780at 584.595 kb on - strand, within OH686_02780at 584.998 kb on + strandat 584.999 kb on - strandat 584.999 kb on - strandat 585.016 kb on - strandat 585.016 kb on - strandat 585.016 kb on - strandat 585.057 kb on - strandat 585.057 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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582,370 + OH686_02760 0.14 +1.0
582,429 + OH686_02760 0.21 +0.3
582,430 - OH686_02760 0.22 +0.4
582,430 - OH686_02760 0.22 +0.1
582,533 + OH686_02760 0.35 +0.6
582,533 + OH686_02760 0.35 +0.5
582,534 - OH686_02760 0.35 +0.6
582,534 - OH686_02760 0.35 +0.6
582,764 + OH686_02760 0.65 +0.5
582,764 + OH686_02760 0.65 +1.0
582,764 + OH686_02760 0.65 -0.2
582,764 + OH686_02760 0.65 +0.4
582,764 + OH686_02760 0.65 +1.0
582,764 + OH686_02760 0.65 +0.7
582,764 + OH686_02760 0.65 -0.3
582,764 + OH686_02760 0.65 +0.8
582,764 + OH686_02760 0.65 +1.0
582,764 + OH686_02760 0.65 -0.0
582,765 - OH686_02760 0.65 +1.1
582,765 - OH686_02760 0.65 +1.4
582,765 - OH686_02760 0.65 +0.9
582,765 - OH686_02760 0.65 +1.0
582,765 - OH686_02760 0.65 +0.9
582,765 - OH686_02760 0.65 +1.2
582,765 - OH686_02760 0.65 +0.9
582,765 - OH686_02760 0.65 +0.5
582,905 + OH686_02760 0.83 +0.9
582,905 + OH686_02760 0.83 +1.3
582,905 + OH686_02760 0.83 +0.6
582,905 + OH686_02760 0.83 +0.9
582,905 + OH686_02760 0.83 +0.7
582,905 + OH686_02760 0.83 +0.8
582,906 - OH686_02760 0.83 +0.6
582,906 - OH686_02760 0.83 +1.0
582,906 - OH686_02760 0.83 +1.7
582,992 + +1.8
582,992 + +1.8
582,992 + +0.9
582,993 - +0.5
582,993 - +0.1
582,993 - +0.4
582,993 - +1.6
583,066 - OH686_02765 0.10 +0.9
583,066 - OH686_02765 0.10 +0.2
583,081 + OH686_02765 0.16 +1.8
583,081 + OH686_02765 0.16 -0.5
583,081 + OH686_02765 0.16 +1.4
583,081 + OH686_02765 0.16 +1.3
583,081 + OH686_02765 0.16 +0.7
583,081 + OH686_02765 0.16 -0.3
583,081 + OH686_02765 0.16 +0.5
583,082 - OH686_02765 0.16 +0.5
583,082 - OH686_02765 0.16 +1.2
583,082 - OH686_02765 0.16 +0.2
583,082 - OH686_02765 0.16 +0.7
583,082 - OH686_02765 0.16 +0.2
583,082 - OH686_02765 0.16 +0.8
583,082 - OH686_02765 0.16 +0.3
583,082 - OH686_02765 0.16 +0.9
583,090 - OH686_02765 0.19 +0.5
583,090 - OH686_02765 0.19 -0.4
583,090 - OH686_02765 0.19 +1.3
583,090 - OH686_02765 0.19 -0.1
583,090 - OH686_02765 0.19 +0.4
583,320 + +0.2
583,320 + +0.8
583,320 + -0.6
583,320 + +0.6
583,320 + +0.8
583,320 + +1.0
583,320 + -0.1
583,320 + +1.1
583,320 + +0.5
583,320 + +0.5
583,320 + +0.6
583,320 + +1.0
583,320 + +0.6
583,320 + +0.3
583,320 + +0.8
583,320 + +1.2
583,321 - +0.2
583,321 - +0.7
583,321 - +0.3
583,321 - -0.7
583,321 - +2.0
583,321 - +0.3
583,321 - -0.4
583,321 - +1.2
583,322 + +1.0
583,322 + +0.9
583,322 + +0.2
583,322 + -0.0
583,323 - +0.4
583,396 + OH686_02770 0.10 +0.7
583,396 + OH686_02770 0.10 +0.8
583,397 - OH686_02770 0.10 -0.2
583,397 - OH686_02770 0.10 +0.5
583,435 + OH686_02770 0.15 -0.5
583,435 + OH686_02770 0.15 -0.3
583,435 + OH686_02770 0.15 +0.9
583,435 + OH686_02770 0.15 +0.5
583,435 + OH686_02770 0.15 +0.2
583,435 + OH686_02770 0.15 +1.0
583,435 + OH686_02770 0.15 +0.3
583,436 - OH686_02770 0.15 +0.3
583,436 - OH686_02770 0.15 +1.2
583,713 + OH686_02770 0.52 +0.3
583,713 + OH686_02770 0.52 -0.5
583,713 + OH686_02770 0.52 -0.2
583,736 - OH686_02770 0.55 +0.7
583,947 + OH686_02770 0.83 +1.3
583,947 + OH686_02770 0.83 +1.1
583,948 - OH686_02770 0.83 +1.0
584,161 + OH686_02775 0.20 +0.3
584,161 + OH686_02775 0.20 +0.4
584,239 + OH686_02775 0.38 +0.5
584,239 + OH686_02775 0.38 -0.2
584,240 - OH686_02775 0.38 +1.0
584,240 - OH686_02775 0.38 +0.5
584,594 + OH686_02780 0.16 +0.4
584,594 + OH686_02780 0.16 +0.7
584,594 + OH686_02780 0.16 +1.1
584,595 - OH686_02780 0.17 +0.9
584,595 - OH686_02780 0.17 +0.8
584,595 - OH686_02780 0.17 +0.7
584,595 - OH686_02780 0.17 +1.1
584,595 - OH686_02780 0.17 +0.7
584,998 + +0.3
584,999 - -0.2
584,999 - +2.0
585,016 - +0.7
585,016 - +0.7
585,016 - +0.4
585,057 - +0.2
585,057 - +0.1

Or see this region's nucleotide sequence