Strain Fitness in Pseudomonas sp. S08-1 around OH686_01840

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_01835 and OH686_01840 are separated by 230 nucleotidesOH686_01840 and OH686_01845 overlap by 4 nucleotidesOH686_01845 and OH686_01850 are separated by 95 nucleotides OH686_01835: OH686_01835 - Transglycosylase, Slt family, at 391,431 to 392,849 _01835 OH686_01840: OH686_01840 - Deoxyribonuclease TatD, at 393,080 to 393,883 _01840 OH686_01845: OH686_01845 - TesB-like acyl-CoA thioesterase 1, at 393,880 to 394,677 _01845 OH686_01850: OH686_01850 - hypothetical protein, at 394,773 to 395,552 _01850 Position (kb) 393 394Strain fitness (log2 ratio) -2 -1 0 1at 392.218 kb on + strand, within OH686_01835at 392.218 kb on + strand, within OH686_01835at 392.218 kb on + strand, within OH686_01835at 392.218 kb on + strand, within OH686_01835at 392.218 kb on + strand, within OH686_01835at 392.218 kb on + strand, within OH686_01835at 392.218 kb on + strand, within OH686_01835at 392.218 kb on + strand, within OH686_01835at 392.218 kb on + strand, within OH686_01835at 392.218 kb on + strand, within OH686_01835at 392.218 kb on + strand, within OH686_01835at 392.218 kb on + strand, within OH686_01835at 392.219 kb on - strand, within OH686_01835at 392.219 kb on - strand, within OH686_01835at 392.219 kb on - strand, within OH686_01835at 392.219 kb on - strand, within OH686_01835at 392.219 kb on - strand, within OH686_01835at 392.219 kb on - strand, within OH686_01835at 392.219 kb on - strand, within OH686_01835at 392.219 kb on - strand, within OH686_01835at 392.401 kb on + strand, within OH686_01835at 392.401 kb on + strand, within OH686_01835at 392.401 kb on + strand, within OH686_01835at 392.402 kb on - strand, within OH686_01835at 392.402 kb on - strand, within OH686_01835at 392.402 kb on - strand, within OH686_01835at 392.402 kb on - strand, within OH686_01835at 392.617 kb on + strand, within OH686_01835at 392.617 kb on + strand, within OH686_01835at 392.617 kb on + strand, within OH686_01835at 392.617 kb on + strand, within OH686_01835at 392.617 kb on + strand, within OH686_01835at 392.617 kb on + strand, within OH686_01835at 392.617 kb on + strand, within OH686_01835at 392.617 kb on + strand, within OH686_01835at 392.617 kb on + strand, within OH686_01835at 392.618 kb on - strand, within OH686_01835at 392.618 kb on - strand, within OH686_01835at 392.618 kb on - strand, within OH686_01835at 392.618 kb on - strand, within OH686_01835at 392.644 kb on + strand, within OH686_01835at 392.644 kb on + strand, within OH686_01835at 392.645 kb on - strand, within OH686_01835at 392.712 kb on + strandat 392.712 kb on + strandat 392.712 kb on + strandat 392.712 kb on + strandat 392.712 kb on + strandat 392.712 kb on + strandat 392.712 kb on + strandat 392.713 kb on - strandat 392.713 kb on - strandat 392.713 kb on - strandat 393.363 kb on + strand, within OH686_01840at 393.363 kb on + strand, within OH686_01840at 393.363 kb on + strand, within OH686_01840at 393.363 kb on + strand, within OH686_01840at 393.364 kb on - strand, within OH686_01840at 393.364 kb on - strand, within OH686_01840at 393.364 kb on - strand, within OH686_01840at 393.581 kb on + strand, within OH686_01840at 393.581 kb on + strand, within OH686_01840at 393.581 kb on + strand, within OH686_01840at 393.581 kb on + strand, within OH686_01840at 393.581 kb on + strand, within OH686_01840at 393.581 kb on + strand, within OH686_01840at 393.581 kb on + strand, within OH686_01840at 393.581 kb on + strand, within OH686_01840at 393.582 kb on - strand, within OH686_01840at 393.582 kb on - strand, within OH686_01840at 393.582 kb on - strand, within OH686_01840at 393.582 kb on - strand, within OH686_01840at 393.582 kb on - strand, within OH686_01840at 393.587 kb on + strand, within OH686_01840at 393.588 kb on - strand, within OH686_01840at 393.588 kb on - strand, within OH686_01840at 393.588 kb on - strand, within OH686_01840at 393.663 kb on + strand, within OH686_01840at 393.713 kb on + strand, within OH686_01840at 393.714 kb on - strand, within OH686_01840at 393.714 kb on - strand, within OH686_01840at 393.783 kb on + strand, within OH686_01840at 393.783 kb on + strand, within OH686_01840at 393.783 kb on + strand, within OH686_01840at 393.784 kb on - strand, within OH686_01840at 393.881 kb on + strandat 393.881 kb on + strandat 393.882 kb on - strandat 393.882 kb on - strandat 393.995 kb on + strand, within OH686_01845at 393.996 kb on - strand, within OH686_01845at 393.996 kb on - strand, within OH686_01845at 393.996 kb on - strand, within OH686_01845at 394.191 kb on + strand, within OH686_01845at 394.191 kb on + strand, within OH686_01845at 394.283 kb on + strand, within OH686_01845at 394.284 kb on - strand, within OH686_01845at 394.562 kb on + strand, within OH686_01845at 394.562 kb on + strand, within OH686_01845at 394.562 kb on + strand, within OH686_01845at 394.563 kb on - strand, within OH686_01845at 394.563 kb on - strand, within OH686_01845at 394.563 kb on - strand, within OH686_01845at 394.644 kb on + strandat 394.645 kb on - strandat 394.694 kb on + strandat 394.694 kb on + strandat 394.694 kb on + strandat 394.695 kb on - strandat 394.695 kb on - strandat 394.695 kb on - strandat 394.695 kb on - strandat 394.695 kb on - strandat 394.695 kb on - strandat 394.695 kb on - strandat 394.708 kb on + strandat 394.708 kb on + strandat 394.709 kb on - strandat 394.761 kb on - strandat 394.851 kb on + strand, within OH686_01850at 394.852 kb on - strand, within OH686_01850at 394.852 kb on - strand, within OH686_01850at 394.852 kb on - strand, within OH686_01850at 394.852 kb on - strand, within OH686_01850

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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392,218 + OH686_01835 0.55 -0.4
392,218 + OH686_01835 0.55 +0.6
392,218 + OH686_01835 0.55 -0.1
392,218 + OH686_01835 0.55 +0.0
392,218 + OH686_01835 0.55 +0.2
392,218 + OH686_01835 0.55 -0.1
392,218 + OH686_01835 0.55 +1.0
392,218 + OH686_01835 0.55 -0.3
392,218 + OH686_01835 0.55 -0.7
392,218 + OH686_01835 0.55 -1.5
392,218 + OH686_01835 0.55 +0.0
392,218 + OH686_01835 0.55 +0.1
392,219 - OH686_01835 0.56 +0.1
392,219 - OH686_01835 0.56 -0.7
392,219 - OH686_01835 0.56 +1.4
392,219 - OH686_01835 0.56 -0.3
392,219 - OH686_01835 0.56 -1.6
392,219 - OH686_01835 0.56 -0.3
392,219 - OH686_01835 0.56 -0.2
392,219 - OH686_01835 0.56 +0.2
392,401 + OH686_01835 0.68 +0.9
392,401 + OH686_01835 0.68 -0.7
392,401 + OH686_01835 0.68 +0.4
392,402 - OH686_01835 0.68 +0.1
392,402 - OH686_01835 0.68 -1.3
392,402 - OH686_01835 0.68 -0.1
392,402 - OH686_01835 0.68 +1.6
392,617 + OH686_01835 0.84 -0.1
392,617 + OH686_01835 0.84 -0.1
392,617 + OH686_01835 0.84 +0.0
392,617 + OH686_01835 0.84 -0.7
392,617 + OH686_01835 0.84 -1.5
392,617 + OH686_01835 0.84 -0.1
392,617 + OH686_01835 0.84 -0.2
392,617 + OH686_01835 0.84 +0.5
392,617 + OH686_01835 0.84 +0.2
392,618 - OH686_01835 0.84 +1.0
392,618 - OH686_01835 0.84 -1.0
392,618 - OH686_01835 0.84 -0.4
392,618 - OH686_01835 0.84 -0.8
392,644 + OH686_01835 0.85 +0.1
392,644 + OH686_01835 0.85 -0.6
392,645 - OH686_01835 0.86 -1.8
392,712 + +1.0
392,712 + +0.6
392,712 + +1.0
392,712 + +1.1
392,712 + +0.0
392,712 + +0.7
392,712 + +0.0
392,713 - -0.4
392,713 - -0.0
392,713 - -0.1
393,363 + OH686_01840 0.35 -0.1
393,363 + OH686_01840 0.35 +0.4
393,363 + OH686_01840 0.35 +0.5
393,363 + OH686_01840 0.35 -0.4
393,364 - OH686_01840 0.35 +0.1
393,364 - OH686_01840 0.35 +0.2
393,364 - OH686_01840 0.35 -0.1
393,581 + OH686_01840 0.62 +0.0
393,581 + OH686_01840 0.62 +0.3
393,581 + OH686_01840 0.62 -0.4
393,581 + OH686_01840 0.62 +1.1
393,581 + OH686_01840 0.62 +0.5
393,581 + OH686_01840 0.62 -0.5
393,581 + OH686_01840 0.62 -0.3
393,581 + OH686_01840 0.62 +0.1
393,582 - OH686_01840 0.62 -0.3
393,582 - OH686_01840 0.62 +0.6
393,582 - OH686_01840 0.62 +0.2
393,582 - OH686_01840 0.62 +0.1
393,582 - OH686_01840 0.62 -0.5
393,587 + OH686_01840 0.63 -0.7
393,588 - OH686_01840 0.63 +0.3
393,588 - OH686_01840 0.63 +0.0
393,588 - OH686_01840 0.63 +0.5
393,663 + OH686_01840 0.73 -0.1
393,713 + OH686_01840 0.79 +0.2
393,714 - OH686_01840 0.79 -0.7
393,714 - OH686_01840 0.79 -0.4
393,783 + OH686_01840 0.87 +0.3
393,783 + OH686_01840 0.87 -0.2
393,783 + OH686_01840 0.87 +1.0
393,784 - OH686_01840 0.88 -0.6
393,881 + -0.3
393,881 + -1.5
393,882 - +0.2
393,882 - -0.0
393,995 + OH686_01845 0.14 -0.8
393,996 - OH686_01845 0.15 +0.4
393,996 - OH686_01845 0.15 +0.7
393,996 - OH686_01845 0.15 -0.3
394,191 + OH686_01845 0.39 +0.3
394,191 + OH686_01845 0.39 -1.6
394,283 + OH686_01845 0.51 -1.2
394,284 - OH686_01845 0.51 -2.7
394,562 + OH686_01845 0.85 +0.3
394,562 + OH686_01845 0.85 -0.9
394,562 + OH686_01845 0.85 -0.4
394,563 - OH686_01845 0.86 -0.2
394,563 - OH686_01845 0.86 -0.6
394,563 - OH686_01845 0.86 +0.5
394,644 + +0.8
394,645 - -0.2
394,694 + +0.8
394,694 + -1.1
394,694 + +1.6
394,695 - -0.5
394,695 - +0.2
394,695 - +0.5
394,695 - +0.1
394,695 - -0.5
394,695 - +0.7
394,695 - -0.8
394,708 + -0.6
394,708 + -0.5
394,709 - -1.6
394,761 - -0.3
394,851 + OH686_01850 0.10 +1.3
394,852 - OH686_01850 0.10 +0.1
394,852 - OH686_01850 0.10 +0.5
394,852 - OH686_01850 0.10 +0.7
394,852 - OH686_01850 0.10 -1.0

Or see this region's nucleotide sequence