Experiment: Dimethyl Sulfoxide 4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_05960 and PS417_05965 overlap by 1 nucleotides PS417_05965 and PS417_05970 overlap by 4 nucleotides PS417_05970 and PS417_05975 overlap by 4 nucleotides PS417_05975 and PS417_05980 overlap by 4 nucleotides
PS417_05960: PS417_05960 - chemotaxis protein, at 1,325,104 to 1,326,726
_05960
PS417_05965: PS417_05965 - chemotaxis protein CheW, at 1,326,726 to 1,327,238
_05965
PS417_05970: PS417_05970 - chemotaxis protein CheR, at 1,327,235 to 1,328,494
_05970
PS417_05975: PS417_05975 - chemotaxis protein CheW, at 1,328,491 to 1,329,192
_05975
PS417_05980: PS417_05980 - chemotaxis protein CheA, at 1,329,189 to 1,331,453
_05980
Position (kb) 1327
1328
1329 Strain fitness (log2 ratio) -1
0
1
2
3 at 1326.373 kb on + strand, within PS417_05960 at 1326.374 kb on - strand, within PS417_05960 at 1326.574 kb on - strand at 1327.003 kb on - strand, within PS417_05965 at 1327.003 kb on - strand, within PS417_05965 at 1327.125 kb on + strand, within PS417_05965 at 1327.235 kb on - strand at 1327.235 kb on - strand at 1327.371 kb on - strand, within PS417_05970 at 1327.569 kb on - strand, within PS417_05970 at 1327.676 kb on + strand, within PS417_05970 at 1327.677 kb on - strand, within PS417_05970 at 1327.736 kb on + strand, within PS417_05970 at 1327.736 kb on + strand, within PS417_05970 at 1327.835 kb on + strand, within PS417_05970 at 1327.836 kb on - strand, within PS417_05970 at 1327.868 kb on + strand, within PS417_05970 at 1327.869 kb on - strand, within PS417_05970 at 1328.249 kb on + strand, within PS417_05970 at 1328.250 kb on - strand, within PS417_05970 at 1328.250 kb on - strand, within PS417_05970 at 1328.250 kb on - strand, within PS417_05970 at 1328.326 kb on - strand, within PS417_05970 at 1328.326 kb on - strand, within PS417_05970 at 1328.339 kb on + strand, within PS417_05970 at 1328.340 kb on - strand, within PS417_05970 at 1328.496 kb on + strand at 1328.497 kb on - strand at 1329.101 kb on - strand, within PS417_05975 at 1329.263 kb on - strand at 1329.441 kb on + strand, within PS417_05980 at 1329.458 kb on + strand, within PS417_05980 at 1329.458 kb on + strand, within PS417_05980 at 1329.459 kb on - strand, within PS417_05980
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 4 vol% remove 1,326,373 + PS417_05960 0.78 -0.3 1,326,374 - PS417_05960 0.78 +0.1 1,326,574 - +1.3 1,327,003 - PS417_05965 0.54 +0.7 1,327,003 - PS417_05965 0.54 +0.9 1,327,125 + PS417_05965 0.78 +0.2 1,327,235 - +0.5 1,327,235 - +1.3 1,327,371 - PS417_05970 0.11 +0.4 1,327,569 - PS417_05970 0.27 +1.2 1,327,676 + PS417_05970 0.35 +0.5 1,327,677 - PS417_05970 0.35 +0.6 1,327,736 + PS417_05970 0.40 +0.2 1,327,736 + PS417_05970 0.40 +0.4 1,327,835 + PS417_05970 0.48 +0.6 1,327,836 - PS417_05970 0.48 +0.9 1,327,868 + PS417_05970 0.50 +0.7 1,327,869 - PS417_05970 0.50 +0.2 1,328,249 + PS417_05970 0.80 +0.6 1,328,250 - PS417_05970 0.81 +0.1 1,328,250 - PS417_05970 0.81 +1.2 1,328,250 - PS417_05970 0.81 +3.2 1,328,326 - PS417_05970 0.87 +0.6 1,328,326 - PS417_05970 0.87 +1.2 1,328,339 + PS417_05970 0.88 -0.9 1,328,340 - PS417_05970 0.88 +0.6 1,328,496 + +0.6 1,328,497 - +0.9 1,329,101 - PS417_05975 0.87 -0.5 1,329,263 - +2.3 1,329,441 + PS417_05980 0.11 +0.5 1,329,458 + PS417_05980 0.12 +1.3 1,329,458 + PS417_05980 0.12 +0.3 1,329,459 - PS417_05980 0.12 +0.5
Or see this region's nucleotide sequence