Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4284 and EX28DRAFT_4285 are separated by 97 nucleotides EX28DRAFT_4285 and EX28DRAFT_4286 are separated by 254 nucleotides EX28DRAFT_4286 and EX28DRAFT_4287 are separated by 1 nucleotides
EX28DRAFT_4284: EX28DRAFT_4284 - ABC-type sugar transport systems, permease components, at 87,799 to 88,716
_4284
EX28DRAFT_4285: EX28DRAFT_4285 - ABC-type sugar transport system, periplasmic component, at 88,814 to 90,130
_4285
EX28DRAFT_4286: EX28DRAFT_4286 - ABC-type branched-chain amino acid transport systems, ATPase component, at 90,385 to 91,098
_4286
EX28DRAFT_4287: EX28DRAFT_4287 - ABC-type branched-chain amino acid transport systems, ATPase component, at 91,100 to 91,867
_4287
Position (kb) 88
89
90
91 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 87.816 kb on + strand at 87.828 kb on - strand at 87.934 kb on - strand, within EX28DRAFT_4284 at 87.935 kb on + strand, within EX28DRAFT_4284 at 87.936 kb on - strand, within EX28DRAFT_4284 at 87.936 kb on - strand, within EX28DRAFT_4284 at 87.940 kb on - strand, within EX28DRAFT_4284 at 88.172 kb on + strand, within EX28DRAFT_4284 at 88.172 kb on + strand, within EX28DRAFT_4284 at 88.176 kb on + strand, within EX28DRAFT_4284 at 88.176 kb on + strand, within EX28DRAFT_4284 at 88.176 kb on + strand, within EX28DRAFT_4284 at 88.177 kb on - strand, within EX28DRAFT_4284 at 88.177 kb on - strand, within EX28DRAFT_4284 at 88.343 kb on + strand, within EX28DRAFT_4284 at 88.371 kb on + strand, within EX28DRAFT_4284 at 88.391 kb on + strand, within EX28DRAFT_4284 at 88.391 kb on + strand, within EX28DRAFT_4284 at 88.391 kb on + strand, within EX28DRAFT_4284 at 88.487 kb on + strand, within EX28DRAFT_4284 at 88.487 kb on + strand, within EX28DRAFT_4284 at 88.488 kb on - strand, within EX28DRAFT_4284 at 88.488 kb on - strand, within EX28DRAFT_4284 at 88.488 kb on - strand, within EX28DRAFT_4284 at 88.600 kb on - strand, within EX28DRAFT_4284 at 88.687 kb on - strand at 88.687 kb on - strand at 88.699 kb on + strand at 88.700 kb on - strand at 88.700 kb on - strand at 88.703 kb on + strand at 88.703 kb on + strand at 88.703 kb on + strand at 88.703 kb on + strand at 88.704 kb on - strand at 88.816 kb on - strand at 89.169 kb on + strand, within EX28DRAFT_4285 at 89.169 kb on + strand, within EX28DRAFT_4285 at 89.170 kb on - strand, within EX28DRAFT_4285 at 89.257 kb on - strand, within EX28DRAFT_4285 at 89.292 kb on + strand, within EX28DRAFT_4285 at 89.332 kb on + strand, within EX28DRAFT_4285 at 89.333 kb on - strand, within EX28DRAFT_4285 at 89.353 kb on - strand, within EX28DRAFT_4285 at 89.389 kb on - strand, within EX28DRAFT_4285 at 89.389 kb on - strand, within EX28DRAFT_4285 at 89.607 kb on + strand, within EX28DRAFT_4285 at 89.608 kb on - strand, within EX28DRAFT_4285 at 89.608 kb on - strand, within EX28DRAFT_4285 at 89.682 kb on + strand, within EX28DRAFT_4285 at 89.682 kb on + strand, within EX28DRAFT_4285 at 89.682 kb on + strand, within EX28DRAFT_4285 at 89.682 kb on + strand, within EX28DRAFT_4285 at 89.685 kb on + strand, within EX28DRAFT_4285 at 89.686 kb on - strand, within EX28DRAFT_4285 at 89.748 kb on + strand, within EX28DRAFT_4285 at 89.749 kb on - strand, within EX28DRAFT_4285 at 89.869 kb on - strand, within EX28DRAFT_4285 at 89.876 kb on + strand, within EX28DRAFT_4285 at 89.938 kb on - strand, within EX28DRAFT_4285 at 89.938 kb on - strand, within EX28DRAFT_4285 at 89.949 kb on + strand, within EX28DRAFT_4285 at 90.144 kb on - strand at 90.144 kb on - strand at 90.174 kb on + strand at 90.175 kb on - strand at 90.234 kb on + strand at 90.235 kb on - strand at 90.382 kb on + strand at 90.382 kb on + strand at 90.398 kb on + strand at 90.561 kb on + strand, within EX28DRAFT_4286 at 90.738 kb on - strand, within EX28DRAFT_4286 at 90.738 kb on - strand, within EX28DRAFT_4286 at 90.739 kb on + strand, within EX28DRAFT_4286 at 90.739 kb on + strand, within EX28DRAFT_4286 at 90.740 kb on - strand, within EX28DRAFT_4286 at 90.901 kb on - strand, within EX28DRAFT_4286 at 91.102 kb on - strand at 91.102 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 87,816 + +0.6 87,828 - -0.1 87,934 - EX28DRAFT_4284 0.15 +0.3 87,935 + EX28DRAFT_4284 0.15 -0.1 87,936 - EX28DRAFT_4284 0.15 -0.6 87,936 - EX28DRAFT_4284 0.15 +0.5 87,940 - EX28DRAFT_4284 0.15 -0.7 88,172 + EX28DRAFT_4284 0.41 +0.9 88,172 + EX28DRAFT_4284 0.41 -0.6 88,176 + EX28DRAFT_4284 0.41 +0.1 88,176 + EX28DRAFT_4284 0.41 +0.2 88,176 + EX28DRAFT_4284 0.41 -1.2 88,177 - EX28DRAFT_4284 0.41 -0.3 88,177 - EX28DRAFT_4284 0.41 -0.1 88,343 + EX28DRAFT_4284 0.59 +1.3 88,371 + EX28DRAFT_4284 0.62 +0.1 88,391 + EX28DRAFT_4284 0.64 -0.8 88,391 + EX28DRAFT_4284 0.64 -1.8 88,391 + EX28DRAFT_4284 0.64 +0.8 88,487 + EX28DRAFT_4284 0.75 +0.2 88,487 + EX28DRAFT_4284 0.75 -0.4 88,488 - EX28DRAFT_4284 0.75 +1.3 88,488 - EX28DRAFT_4284 0.75 +0.9 88,488 - EX28DRAFT_4284 0.75 +1.9 88,600 - EX28DRAFT_4284 0.87 +0.2 88,687 - -0.1 88,687 - -0.1 88,699 + +0.1 88,700 - +2.0 88,700 - -0.3 88,703 + +0.0 88,703 + +0.1 88,703 + +0.1 88,703 + +0.1 88,704 - -0.5 88,816 - +0.6 89,169 + EX28DRAFT_4285 0.27 -1.8 89,169 + EX28DRAFT_4285 0.27 -2.8 89,170 - EX28DRAFT_4285 0.27 -0.3 89,257 - EX28DRAFT_4285 0.34 -0.5 89,292 + EX28DRAFT_4285 0.36 -1.9 89,332 + EX28DRAFT_4285 0.39 +0.1 89,333 - EX28DRAFT_4285 0.39 +0.4 89,353 - EX28DRAFT_4285 0.41 +0.4 89,389 - EX28DRAFT_4285 0.44 -0.2 89,389 - EX28DRAFT_4285 0.44 -0.4 89,607 + EX28DRAFT_4285 0.60 -0.6 89,608 - EX28DRAFT_4285 0.60 -0.2 89,608 - EX28DRAFT_4285 0.60 -0.1 89,682 + EX28DRAFT_4285 0.66 -0.2 89,682 + EX28DRAFT_4285 0.66 +1.2 89,682 + EX28DRAFT_4285 0.66 -1.8 89,682 + EX28DRAFT_4285 0.66 -0.7 89,685 + EX28DRAFT_4285 0.66 +1.0 89,686 - EX28DRAFT_4285 0.66 -0.0 89,748 + EX28DRAFT_4285 0.71 -0.3 89,749 - EX28DRAFT_4285 0.71 -0.3 89,869 - EX28DRAFT_4285 0.80 -0.1 89,876 + EX28DRAFT_4285 0.81 -0.5 89,938 - EX28DRAFT_4285 0.85 +0.1 89,938 - EX28DRAFT_4285 0.85 -1.3 89,949 + EX28DRAFT_4285 0.86 +1.0 90,144 - +1.2 90,144 - -0.0 90,174 + +0.3 90,175 - +0.5 90,234 + -0.5 90,235 - -0.4 90,382 + +0.4 90,382 + +0.2 90,398 + +0.1 90,561 + EX28DRAFT_4286 0.25 -0.4 90,738 - EX28DRAFT_4286 0.49 +0.2 90,738 - EX28DRAFT_4286 0.49 +0.3 90,739 + EX28DRAFT_4286 0.50 -0.6 90,739 + EX28DRAFT_4286 0.50 -1.0 90,740 - EX28DRAFT_4286 0.50 +0.2 90,901 - EX28DRAFT_4286 0.72 -1.6 91,102 - +1.6 91,102 - -1.3
Or see this region's nucleotide sequence