Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4233

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4232 and EX28DRAFT_4233 are separated by 135 nucleotidesEX28DRAFT_4233 and EX28DRAFT_4234 overlap by 4 nucleotides EX28DRAFT_4232: EX28DRAFT_4232 - acetate--CoA ligase, at 37,704 to 39,662 _4232 EX28DRAFT_4233: EX28DRAFT_4233 - Predicted membrane protein, at 39,798 to 40,112 _4233 EX28DRAFT_4234: EX28DRAFT_4234 - cation/acetate symporter ActP, at 40,109 to 41,758 _4234 Position (kb) 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2at 39.165 kb on + strand, within EX28DRAFT_4232at 39.165 kb on + strand, within EX28DRAFT_4232at 39.189 kb on + strand, within EX28DRAFT_4232at 39.189 kb on + strand, within EX28DRAFT_4232at 39.189 kb on + strand, within EX28DRAFT_4232at 39.229 kb on - strand, within EX28DRAFT_4232at 39.229 kb on - strand, within EX28DRAFT_4232at 39.387 kb on + strand, within EX28DRAFT_4232at 39.387 kb on + strand, within EX28DRAFT_4232at 39.387 kb on + strand, within EX28DRAFT_4232at 39.388 kb on - strand, within EX28DRAFT_4232at 39.430 kb on - strand, within EX28DRAFT_4232at 39.430 kb on - strand, within EX28DRAFT_4232at 39.430 kb on - strand, within EX28DRAFT_4232at 39.455 kb on + strand, within EX28DRAFT_4232at 39.533 kb on + strandat 39.534 kb on - strandat 39.542 kb on + strandat 39.542 kb on + strandat 39.542 kb on + strandat 39.543 kb on - strandat 39.774 kb on + strandat 39.775 kb on - strandat 39.775 kb on - strandat 39.779 kb on + strandat 39.779 kb on + strandat 39.779 kb on + strandat 39.779 kb on + strandat 39.780 kb on - strandat 39.809 kb on + strandat 39.810 kb on - strandat 39.830 kb on + strand, within EX28DRAFT_4233at 39.906 kb on + strand, within EX28DRAFT_4233at 39.906 kb on + strand, within EX28DRAFT_4233at 39.907 kb on - strand, within EX28DRAFT_4233at 39.918 kb on - strand, within EX28DRAFT_4233at 39.918 kb on - strand, within EX28DRAFT_4233at 40.076 kb on + strand, within EX28DRAFT_4233at 40.077 kb on - strand, within EX28DRAFT_4233at 40.079 kb on + strand, within EX28DRAFT_4233at 40.099 kb on + strandat 40.099 kb on + strandat 40.250 kb on + strandat 40.250 kb on + strandat 40.259 kb on + strandat 40.298 kb on + strand, within EX28DRAFT_4234at 40.315 kb on + strand, within EX28DRAFT_4234at 40.315 kb on + strand, within EX28DRAFT_4234at 40.315 kb on + strand, within EX28DRAFT_4234at 40.357 kb on + strand, within EX28DRAFT_4234at 40.357 kb on + strand, within EX28DRAFT_4234at 40.425 kb on - strand, within EX28DRAFT_4234at 40.501 kb on + strand, within EX28DRAFT_4234at 40.501 kb on + strand, within EX28DRAFT_4234at 40.502 kb on - strand, within EX28DRAFT_4234at 40.590 kb on - strand, within EX28DRAFT_4234at 40.590 kb on - strand, within EX28DRAFT_4234at 40.649 kb on + strand, within EX28DRAFT_4234at 40.650 kb on - strand, within EX28DRAFT_4234at 40.691 kb on + strand, within EX28DRAFT_4234at 40.691 kb on + strand, within EX28DRAFT_4234at 40.691 kb on + strand, within EX28DRAFT_4234at 40.691 kb on + strand, within EX28DRAFT_4234at 40.691 kb on + strand, within EX28DRAFT_4234at 40.691 kb on + strand, within EX28DRAFT_4234at 40.691 kb on + strand, within EX28DRAFT_4234at 40.692 kb on - strand, within EX28DRAFT_4234at 40.692 kb on - strand, within EX28DRAFT_4234at 40.692 kb on - strand, within EX28DRAFT_4234at 40.780 kb on + strand, within EX28DRAFT_4234at 41.007 kb on - strand, within EX28DRAFT_4234at 41.007 kb on - strand, within EX28DRAFT_4234at 41.027 kb on + strand, within EX28DRAFT_4234at 41.027 kb on + strand, within EX28DRAFT_4234

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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39,165 + EX28DRAFT_4232 0.75 +0.1
39,165 + EX28DRAFT_4232 0.75 +0.3
39,189 + EX28DRAFT_4232 0.76 +0.3
39,189 + EX28DRAFT_4232 0.76 -0.1
39,189 + EX28DRAFT_4232 0.76 -0.9
39,229 - EX28DRAFT_4232 0.78 -0.2
39,229 - EX28DRAFT_4232 0.78 +0.1
39,387 + EX28DRAFT_4232 0.86 -0.0
39,387 + EX28DRAFT_4232 0.86 +0.9
39,387 + EX28DRAFT_4232 0.86 -1.2
39,388 - EX28DRAFT_4232 0.86 -0.0
39,430 - EX28DRAFT_4232 0.88 -0.1
39,430 - EX28DRAFT_4232 0.88 -0.3
39,430 - EX28DRAFT_4232 0.88 -0.1
39,455 + EX28DRAFT_4232 0.89 -0.1
39,533 + -1.3
39,534 - +0.3
39,542 + -0.4
39,542 + -0.1
39,542 + +1.5
39,543 - -1.7
39,774 + +0.1
39,775 - -0.2
39,775 - +0.3
39,779 + +0.4
39,779 + -2.6
39,779 + -2.6
39,779 + +0.3
39,780 - -0.4
39,809 + -0.0
39,810 - +0.5
39,830 + EX28DRAFT_4233 0.10 +0.1
39,906 + EX28DRAFT_4233 0.34 +0.8
39,906 + EX28DRAFT_4233 0.34 +0.4
39,907 - EX28DRAFT_4233 0.35 +0.2
39,918 - EX28DRAFT_4233 0.38 -0.2
39,918 - EX28DRAFT_4233 0.38 -0.3
40,076 + EX28DRAFT_4233 0.88 +0.1
40,077 - EX28DRAFT_4233 0.89 +0.2
40,079 + EX28DRAFT_4233 0.89 -0.1
40,099 + -0.2
40,099 + +0.0
40,250 + +0.1
40,250 + +0.9
40,259 + -0.2
40,298 + EX28DRAFT_4234 0.11 +0.0
40,315 + EX28DRAFT_4234 0.12 -0.1
40,315 + EX28DRAFT_4234 0.12 +0.1
40,315 + EX28DRAFT_4234 0.12 +0.6
40,357 + EX28DRAFT_4234 0.15 -0.3
40,357 + EX28DRAFT_4234 0.15 +0.2
40,425 - EX28DRAFT_4234 0.19 -0.4
40,501 + EX28DRAFT_4234 0.24 -1.9
40,501 + EX28DRAFT_4234 0.24 +0.7
40,502 - EX28DRAFT_4234 0.24 -0.6
40,590 - EX28DRAFT_4234 0.29 -0.1
40,590 - EX28DRAFT_4234 0.29 +0.1
40,649 + EX28DRAFT_4234 0.33 +0.3
40,650 - EX28DRAFT_4234 0.33 +0.6
40,691 + EX28DRAFT_4234 0.35 +0.6
40,691 + EX28DRAFT_4234 0.35 +1.1
40,691 + EX28DRAFT_4234 0.35 +1.2
40,691 + EX28DRAFT_4234 0.35 +0.1
40,691 + EX28DRAFT_4234 0.35 +0.1
40,691 + EX28DRAFT_4234 0.35 -0.1
40,691 + EX28DRAFT_4234 0.35 -0.6
40,692 - EX28DRAFT_4234 0.35 -0.9
40,692 - EX28DRAFT_4234 0.35 -0.1
40,692 - EX28DRAFT_4234 0.35 +0.9
40,780 + EX28DRAFT_4234 0.41 -0.8
41,007 - EX28DRAFT_4234 0.54 -0.2
41,007 - EX28DRAFT_4234 0.54 +1.8
41,027 + EX28DRAFT_4234 0.56 +0.3
41,027 + EX28DRAFT_4234 0.56 +0.9

Or see this region's nucleotide sequence