Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4225

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4223 and EX28DRAFT_4224 overlap by 1 nucleotidesEX28DRAFT_4224 and EX28DRAFT_4225 are separated by 2 nucleotidesEX28DRAFT_4225 and EX28DRAFT_4226 are separated by 256 nucleotides EX28DRAFT_4223: EX28DRAFT_4223 - hypothetical protein, at 29,735 to 30,949 _4223 EX28DRAFT_4224: EX28DRAFT_4224 - Predicted double-glycine peptidase, at 30,949 to 31,476 _4224 EX28DRAFT_4225: EX28DRAFT_4225 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 31,479 to 32,210 _4225 EX28DRAFT_4226: EX28DRAFT_4226 - formate dehydrogenase alpha subunit (EC 1.2.1.2), at 32,467 to 34,614 _4226 EX28DRAFT_4227: EX28DRAFT_4227 - RNA, at 32,879 to 32,933 _4227 Position (kb) 31 32 33Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 30.496 kb on + strand, within EX28DRAFT_4223at 30.519 kb on - strand, within EX28DRAFT_4223at 30.519 kb on - strand, within EX28DRAFT_4223at 30.557 kb on - strand, within EX28DRAFT_4223at 30.734 kb on - strand, within EX28DRAFT_4223at 30.764 kb on + strand, within EX28DRAFT_4223at 30.764 kb on + strand, within EX28DRAFT_4223at 30.765 kb on - strand, within EX28DRAFT_4223at 30.765 kb on - strand, within EX28DRAFT_4223at 30.765 kb on - strand, within EX28DRAFT_4223at 30.765 kb on - strand, within EX28DRAFT_4223at 30.765 kb on - strand, within EX28DRAFT_4223at 30.766 kb on + strand, within EX28DRAFT_4223at 30.767 kb on - strand, within EX28DRAFT_4223at 30.779 kb on - strand, within EX28DRAFT_4223at 30.782 kb on - strand, within EX28DRAFT_4223at 30.788 kb on + strand, within EX28DRAFT_4223at 30.878 kb on - strandat 30.971 kb on + strandat 30.971 kb on + strandat 30.977 kb on + strandat 31.001 kb on - strandat 31.100 kb on + strand, within EX28DRAFT_4224at 31.100 kb on + strand, within EX28DRAFT_4224at 31.152 kb on + strand, within EX28DRAFT_4224at 31.327 kb on + strand, within EX28DRAFT_4224at 31.359 kb on + strand, within EX28DRAFT_4224at 31.475 kb on + strandat 31.477 kb on + strandat 31.478 kb on - strandat 31.478 kb on - strandat 31.478 kb on - strandat 31.480 kb on + strandat 31.481 kb on - strandat 31.481 kb on - strandat 31.523 kb on - strandat 31.715 kb on - strand, within EX28DRAFT_4225at 31.910 kb on - strand, within EX28DRAFT_4225at 31.910 kb on - strand, within EX28DRAFT_4225at 32.048 kb on + strand, within EX28DRAFT_4225at 32.187 kb on + strandat 32.187 kb on + strandat 32.187 kb on + strandat 32.187 kb on + strandat 32.188 kb on - strandat 32.188 kb on - strandat 32.188 kb on - strandat 32.232 kb on + strandat 32.233 kb on - strandat 32.395 kb on - strandat 32.429 kb on + strandat 32.605 kb on + strandat 32.605 kb on + strandat 32.606 kb on - strandat 32.623 kb on - strandat 32.758 kb on + strand, within EX28DRAFT_4226at 32.758 kb on + strand, within EX28DRAFT_4226at 32.818 kb on + strand, within EX28DRAFT_4226at 32.818 kb on + strand, within EX28DRAFT_4226at 32.818 kb on + strand, within EX28DRAFT_4226at 32.819 kb on - strand, within EX28DRAFT_4226at 32.819 kb on - strand, within EX28DRAFT_4226at 32.819 kb on - strand, within EX28DRAFT_4226at 32.957 kb on + strandat 32.958 kb on - strandat 32.962 kb on - strandat 32.962 kb on - strandat 32.989 kb on + strandat 33.168 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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30,496 + EX28DRAFT_4223 0.63 +1.2
30,519 - EX28DRAFT_4223 0.65 +0.2
30,519 - EX28DRAFT_4223 0.65 -0.3
30,557 - EX28DRAFT_4223 0.68 +0.3
30,734 - EX28DRAFT_4223 0.82 +0.3
30,764 + EX28DRAFT_4223 0.85 -0.6
30,764 + EX28DRAFT_4223 0.85 -0.8
30,765 - EX28DRAFT_4223 0.85 +1.0
30,765 - EX28DRAFT_4223 0.85 -0.5
30,765 - EX28DRAFT_4223 0.85 -0.2
30,765 - EX28DRAFT_4223 0.85 -3.5
30,765 - EX28DRAFT_4223 0.85 -0.2
30,766 + EX28DRAFT_4223 0.85 +0.2
30,767 - EX28DRAFT_4223 0.85 -0.1
30,779 - EX28DRAFT_4223 0.86 -1.9
30,782 - EX28DRAFT_4223 0.86 -0.7
30,788 + EX28DRAFT_4223 0.87 +0.3
30,878 - +1.0
30,971 + +0.9
30,971 + -1.2
30,977 + +1.5
31,001 - +0.9
31,100 + EX28DRAFT_4224 0.29 -3.4
31,100 + EX28DRAFT_4224 0.29 +0.5
31,152 + EX28DRAFT_4224 0.38 +0.4
31,327 + EX28DRAFT_4224 0.72 -1.0
31,359 + EX28DRAFT_4224 0.78 -1.1
31,475 + -0.3
31,477 + -0.3
31,478 - +0.6
31,478 - -0.0
31,478 - +1.6
31,480 + -0.5
31,481 - -2.3
31,481 - +2.5
31,523 - +0.4
31,715 - EX28DRAFT_4225 0.32 -0.3
31,910 - EX28DRAFT_4225 0.59 +1.2
31,910 - EX28DRAFT_4225 0.59 -0.8
32,048 + EX28DRAFT_4225 0.78 +0.5
32,187 + -0.8
32,187 + +0.4
32,187 + -0.2
32,187 + -0.4
32,188 - +0.4
32,188 - +0.5
32,188 - -0.8
32,232 + +1.2
32,233 - -2.4
32,395 - +0.5
32,429 + +0.5
32,605 + -0.2
32,605 + -0.3
32,606 - +0.6
32,623 - +0.0
32,758 + EX28DRAFT_4226 0.14 +0.7
32,758 + EX28DRAFT_4226 0.14 -0.5
32,818 + EX28DRAFT_4226 0.16 +0.4
32,818 + EX28DRAFT_4226 0.16 +1.1
32,818 + EX28DRAFT_4226 0.16 +0.0
32,819 - EX28DRAFT_4226 0.16 +0.2
32,819 - EX28DRAFT_4226 0.16 +0.3
32,819 - EX28DRAFT_4226 0.16 +0.5
32,957 + -1.0
32,958 - +2.7
32,962 - -0.4
32,962 - +0.8
32,989 + +1.2
33,168 + +1.1

Or see this region's nucleotide sequence