Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4082 and EX28DRAFT_4083 are separated by 1 nucleotides EX28DRAFT_4083 and EX28DRAFT_4084 overlap by 4 nucleotides
EX28DRAFT_4082: EX28DRAFT_4082 - Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis, at 56,432 to 57,571
_4082
EX28DRAFT_4083: EX28DRAFT_4083 - Glycosyltransferases involved in cell wall biogenesis, at 57,573 to 58,556
_4083
EX28DRAFT_4084: EX28DRAFT_4084 - Methionyl-tRNA formyltransferase, at 58,553 to 60,535
_4084
Position (kb) 57
58
59 Strain fitness (log2 ratio) -2
-1
0
1
2 at 56.662 kb on + strand, within EX28DRAFT_4082 at 56.695 kb on + strand, within EX28DRAFT_4082 at 56.695 kb on + strand, within EX28DRAFT_4082 at 56.695 kb on + strand, within EX28DRAFT_4082 at 56.747 kb on - strand, within EX28DRAFT_4082 at 56.820 kb on - strand, within EX28DRAFT_4082 at 56.876 kb on - strand, within EX28DRAFT_4082 at 56.919 kb on - strand, within EX28DRAFT_4082 at 56.919 kb on - strand, within EX28DRAFT_4082 at 56.934 kb on + strand, within EX28DRAFT_4082 at 56.934 kb on + strand, within EX28DRAFT_4082 at 56.980 kb on + strand, within EX28DRAFT_4082 at 57.133 kb on + strand, within EX28DRAFT_4082 at 57.137 kb on + strand, within EX28DRAFT_4082 at 57.137 kb on + strand, within EX28DRAFT_4082 at 57.138 kb on - strand, within EX28DRAFT_4082 at 57.181 kb on - strand, within EX28DRAFT_4082 at 57.310 kb on + strand, within EX28DRAFT_4082 at 57.311 kb on - strand, within EX28DRAFT_4082 at 57.311 kb on - strand, within EX28DRAFT_4082 at 57.451 kb on - strand, within EX28DRAFT_4082 at 57.476 kb on - strand at 57.573 kb on - strand at 57.573 kb on - strand at 57.573 kb on - strand at 57.621 kb on + strand at 57.693 kb on + strand, within EX28DRAFT_4083 at 57.804 kb on + strand, within EX28DRAFT_4083 at 57.804 kb on + strand, within EX28DRAFT_4083 at 57.805 kb on - strand, within EX28DRAFT_4083 at 57.805 kb on - strand, within EX28DRAFT_4083 at 58.122 kb on - strand, within EX28DRAFT_4083 at 58.207 kb on - strand, within EX28DRAFT_4083 at 58.236 kb on + strand, within EX28DRAFT_4083 at 58.236 kb on + strand, within EX28DRAFT_4083 at 58.236 kb on + strand, within EX28DRAFT_4083 at 58.236 kb on + strand, within EX28DRAFT_4083 at 58.237 kb on - strand, within EX28DRAFT_4083 at 58.237 kb on - strand, within EX28DRAFT_4083 at 58.237 kb on - strand, within EX28DRAFT_4083 at 58.237 kb on - strand, within EX28DRAFT_4083 at 58.406 kb on + strand, within EX28DRAFT_4083 at 58.406 kb on + strand, within EX28DRAFT_4083 at 58.407 kb on - strand, within EX28DRAFT_4083 at 58.452 kb on + strand, within EX28DRAFT_4083 at 58.453 kb on - strand, within EX28DRAFT_4083 at 58.467 kb on + strand at 58.467 kb on + strand at 58.467 kb on + strand at 58.468 kb on - strand at 58.468 kb on - strand at 58.500 kb on - strand at 58.738 kb on - strand at 58.800 kb on - strand, within EX28DRAFT_4084 at 58.802 kb on + strand, within EX28DRAFT_4084 at 59.006 kb on - strand, within EX28DRAFT_4084 at 59.247 kb on - strand, within EX28DRAFT_4084 at 59.408 kb on + strand, within EX28DRAFT_4084
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 56,662 + EX28DRAFT_4082 0.20 -1.4 56,695 + EX28DRAFT_4082 0.23 -1.0 56,695 + EX28DRAFT_4082 0.23 +0.6 56,695 + EX28DRAFT_4082 0.23 -1.2 56,747 - EX28DRAFT_4082 0.28 -0.1 56,820 - EX28DRAFT_4082 0.34 +0.2 56,876 - EX28DRAFT_4082 0.39 +0.2 56,919 - EX28DRAFT_4082 0.43 +0.2 56,919 - EX28DRAFT_4082 0.43 -2.0 56,934 + EX28DRAFT_4082 0.44 +0.0 56,934 + EX28DRAFT_4082 0.44 -0.3 56,980 + EX28DRAFT_4082 0.48 -0.1 57,133 + EX28DRAFT_4082 0.61 -0.1 57,137 + EX28DRAFT_4082 0.62 +0.5 57,137 + EX28DRAFT_4082 0.62 -2.2 57,138 - EX28DRAFT_4082 0.62 -0.7 57,181 - EX28DRAFT_4082 0.66 +0.2 57,310 + EX28DRAFT_4082 0.77 -0.9 57,311 - EX28DRAFT_4082 0.77 +1.5 57,311 - EX28DRAFT_4082 0.77 -0.4 57,451 - EX28DRAFT_4082 0.89 +1.2 57,476 - +1.6 57,573 - -0.4 57,573 - +0.3 57,573 - -1.5 57,621 + +0.4 57,693 + EX28DRAFT_4083 0.12 -0.6 57,804 + EX28DRAFT_4083 0.23 -1.2 57,804 + EX28DRAFT_4083 0.23 +0.2 57,805 - EX28DRAFT_4083 0.24 -1.8 57,805 - EX28DRAFT_4083 0.24 -0.9 58,122 - EX28DRAFT_4083 0.56 +0.5 58,207 - EX28DRAFT_4083 0.64 -1.4 58,236 + EX28DRAFT_4083 0.67 +0.0 58,236 + EX28DRAFT_4083 0.67 -0.4 58,236 + EX28DRAFT_4083 0.67 +2.3 58,236 + EX28DRAFT_4083 0.67 +0.3 58,237 - EX28DRAFT_4083 0.67 +1.0 58,237 - EX28DRAFT_4083 0.67 -0.2 58,237 - EX28DRAFT_4083 0.67 -1.4 58,237 - EX28DRAFT_4083 0.67 +0.5 58,406 + EX28DRAFT_4083 0.85 +0.2 58,406 + EX28DRAFT_4083 0.85 -0.4 58,407 - EX28DRAFT_4083 0.85 -0.5 58,452 + EX28DRAFT_4083 0.89 -0.5 58,453 - EX28DRAFT_4083 0.89 +0.3 58,467 + -0.6 58,467 + +0.5 58,467 + -0.9 58,468 - +0.6 58,468 - +1.4 58,500 - +1.5 58,738 - +0.8 58,800 - EX28DRAFT_4084 0.12 +0.1 58,802 + EX28DRAFT_4084 0.13 -0.1 59,006 - EX28DRAFT_4084 0.23 +0.2 59,247 - EX28DRAFT_4084 0.35 +0.2 59,408 + EX28DRAFT_4084 0.43 -0.5
Or see this region's nucleotide sequence