Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3859 and EX28DRAFT_3860 overlap by 1 nucleotides EX28DRAFT_3860 and EX28DRAFT_3861 are separated by 32 nucleotides EX28DRAFT_3861 and EX28DRAFT_3862 are separated by 11 nucleotides EX28DRAFT_3862 and EX28DRAFT_3863 are separated by 220 nucleotides
EX28DRAFT_3859: EX28DRAFT_3859 - Glycerol-3-phosphate dehydrogenase, at 69,128 to 70,147
_3859
EX28DRAFT_3860: EX28DRAFT_3860 - protein-export chaperone SecB, at 70,147 to 70,614
_3860
EX28DRAFT_3861: EX28DRAFT_3861 - Glutaredoxin, GrxC family, at 70,647 to 70,898
_3861
EX28DRAFT_3862: EX28DRAFT_3862 - Rhodanese-related sulfurtransferase, at 70,910 to 71,341
_3862
EX28DRAFT_3863: EX28DRAFT_3863 - phosphoglycerate mutase (EC 5.4.2.1), at 71,562 to 73,133
_3863
Position (kb) 70
71
72 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 70.630 kb on - strand at 70.690 kb on + strand, within EX28DRAFT_3861 at 70.691 kb on - strand, within EX28DRAFT_3861 at 70.691 kb on - strand, within EX28DRAFT_3861 at 70.911 kb on + strand at 70.912 kb on - strand at 70.912 kb on - strand at 71.252 kb on - strand, within EX28DRAFT_3862 at 71.370 kb on - strand at 71.390 kb on + strand at 71.391 kb on - strand at 71.392 kb on + strand at 71.393 kb on - strand at 71.393 kb on - strand at 71.393 kb on - strand at 71.413 kb on - strand at 71.433 kb on - strand at 71.433 kb on - strand at 71.614 kb on + strand at 71.652 kb on - strand at 71.813 kb on + strand, within EX28DRAFT_3863 at 71.927 kb on - strand, within EX28DRAFT_3863 at 72.027 kb on + strand, within EX28DRAFT_3863 at 72.027 kb on + strand, within EX28DRAFT_3863 at 72.151 kb on - strand, within EX28DRAFT_3863 at 72.153 kb on + strand, within EX28DRAFT_3863 at 72.153 kb on + strand, within EX28DRAFT_3863 at 72.199 kb on - strand, within EX28DRAFT_3863 at 72.199 kb on - strand, within EX28DRAFT_3863 at 72.267 kb on + strand, within EX28DRAFT_3863 at 72.268 kb on - strand, within EX28DRAFT_3863 at 72.268 kb on - strand, within EX28DRAFT_3863
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 70,630 - +0.2 70,690 + EX28DRAFT_3861 0.17 +3.0 70,691 - EX28DRAFT_3861 0.17 -0.4 70,691 - EX28DRAFT_3861 0.17 -0.0 70,911 + -1.3 70,912 - +0.6 70,912 - +0.0 71,252 - EX28DRAFT_3862 0.79 -0.7 71,370 - -0.7 71,390 + +1.9 71,391 - +0.2 71,392 + -0.8 71,393 - +0.3 71,393 - -0.3 71,393 - +0.2 71,413 - +1.1 71,433 - +0.5 71,433 - +0.4 71,614 + -0.3 71,652 - -0.7 71,813 + EX28DRAFT_3863 0.16 +0.7 71,927 - EX28DRAFT_3863 0.23 -0.5 72,027 + EX28DRAFT_3863 0.30 -0.0 72,027 + EX28DRAFT_3863 0.30 +0.8 72,151 - EX28DRAFT_3863 0.37 -0.4 72,153 + EX28DRAFT_3863 0.38 -0.1 72,153 + EX28DRAFT_3863 0.38 -0.0 72,199 - EX28DRAFT_3863 0.41 -0.6 72,199 - EX28DRAFT_3863 0.41 -3.0 72,267 + EX28DRAFT_3863 0.45 +0.3 72,268 - EX28DRAFT_3863 0.45 +2.5 72,268 - EX28DRAFT_3863 0.45 -1.4
Or see this region's nucleotide sequence