Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3540 and EX28DRAFT_3541 overlap by 29 nucleotides EX28DRAFT_3541 and EX28DRAFT_3542 are separated by 21 nucleotides EX28DRAFT_3542 and EX28DRAFT_3543 are separated by 9 nucleotides
EX28DRAFT_3540: EX28DRAFT_3540 - 4-hydroxyphenylacetate catabolism regulatory protein HpaA, at 204,334 to 205,266
_3540
EX28DRAFT_3541: EX28DRAFT_3541 - 4-hydroxyphenylacetate permease, at 205,238 to 206,590
_3541
EX28DRAFT_3542: EX28DRAFT_3542 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase, at 206,612 to 207,409
_3542
EX28DRAFT_3543: EX28DRAFT_3543 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase, at 207,419 to 208,222
_3543
Position (kb) 205
206
207 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 204.793 kb on - strand, within EX28DRAFT_3540 at 204.933 kb on - strand, within EX28DRAFT_3540 at 205.237 kb on - strand at 205.363 kb on + strand at 205.363 kb on + strand at 205.364 kb on - strand at 205.503 kb on - strand, within EX28DRAFT_3541 at 205.809 kb on + strand, within EX28DRAFT_3541 at 206.129 kb on - strand, within EX28DRAFT_3541 at 206.373 kb on + strand, within EX28DRAFT_3541 at 206.373 kb on + strand, within EX28DRAFT_3541 at 206.374 kb on - strand, within EX28DRAFT_3541 at 206.382 kb on + strand, within EX28DRAFT_3541 at 206.383 kb on - strand, within EX28DRAFT_3541 at 206.419 kb on + strand, within EX28DRAFT_3541 at 206.420 kb on - strand, within EX28DRAFT_3541 at 206.420 kb on - strand, within EX28DRAFT_3541 at 206.560 kb on + strand at 206.607 kb on + strand at 206.626 kb on + strand at 206.626 kb on + strand at 207.010 kb on - strand, within EX28DRAFT_3542 at 207.010 kb on - strand, within EX28DRAFT_3542 at 207.222 kb on + strand, within EX28DRAFT_3542 at 207.240 kb on - strand, within EX28DRAFT_3542 at 207.333 kb on + strand at 207.333 kb on + strand at 207.334 kb on - strand at 207.334 kb on - strand at 207.334 kb on - strand at 207.543 kb on - strand, within EX28DRAFT_3543
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 204,793 - EX28DRAFT_3540 0.49 +0.4 204,933 - EX28DRAFT_3540 0.64 +0.5 205,237 - -1.4 205,363 + +0.4 205,363 + +0.9 205,364 - +0.0 205,503 - EX28DRAFT_3541 0.20 -2.9 205,809 + EX28DRAFT_3541 0.42 -1.0 206,129 - EX28DRAFT_3541 0.66 +0.7 206,373 + EX28DRAFT_3541 0.84 +0.9 206,373 + EX28DRAFT_3541 0.84 +0.3 206,374 - EX28DRAFT_3541 0.84 -1.1 206,382 + EX28DRAFT_3541 0.85 -0.8 206,383 - EX28DRAFT_3541 0.85 -0.1 206,419 + EX28DRAFT_3541 0.87 -0.1 206,420 - EX28DRAFT_3541 0.87 -1.1 206,420 - EX28DRAFT_3541 0.87 -0.6 206,560 + +1.2 206,607 + +0.5 206,626 + +0.2 206,626 + +0.2 207,010 - EX28DRAFT_3542 0.50 -0.3 207,010 - EX28DRAFT_3542 0.50 -0.3 207,222 + EX28DRAFT_3542 0.76 -1.4 207,240 - EX28DRAFT_3542 0.79 +0.0 207,333 + -0.5 207,333 + +1.5 207,334 - -0.3 207,334 - -1.2 207,334 - -0.1 207,543 - EX28DRAFT_3543 0.15 -2.0
Or see this region's nucleotide sequence