Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3536 and EX28DRAFT_3537 are separated by 191 nucleotides EX28DRAFT_3537 and EX28DRAFT_3538 are separated by 179 nucleotides EX28DRAFT_3538 and EX28DRAFT_3539 are separated by 17 nucleotides
EX28DRAFT_3536: EX28DRAFT_3536 - Carbon starvation protein, predicted membrane protein, at 198,617 to 200,770
_3536
EX28DRAFT_3537: EX28DRAFT_3537 - Predicted transcriptional regulator, at 200,962 to 201,879
_3537
EX28DRAFT_3538: EX28DRAFT_3538 - 4-hydroxyphenylacetate 3-monooxygenase, reductase component, at 202,059 to 202,571
_3538
EX28DRAFT_3539: EX28DRAFT_3539 - 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component, at 202,589 to 204,151
_3539
Position (kb) 200
201
202 Strain fitness (log2 ratio) -2
-1
0
1
2 at 199.969 kb on + strand, within EX28DRAFT_3536 at 199.970 kb on - strand, within EX28DRAFT_3536 at 199.970 kb on - strand, within EX28DRAFT_3536 at 199.996 kb on + strand, within EX28DRAFT_3536 at 200.064 kb on + strand, within EX28DRAFT_3536 at 200.064 kb on + strand, within EX28DRAFT_3536 at 200.089 kb on + strand, within EX28DRAFT_3536 at 200.139 kb on + strand, within EX28DRAFT_3536 at 200.140 kb on - strand, within EX28DRAFT_3536 at 200.140 kb on - strand, within EX28DRAFT_3536 at 200.365 kb on + strand, within EX28DRAFT_3536 at 200.509 kb on - strand, within EX28DRAFT_3536 at 200.526 kb on + strand, within EX28DRAFT_3536 at 200.526 kb on + strand, within EX28DRAFT_3536 at 200.527 kb on - strand, within EX28DRAFT_3536 at 200.601 kb on + strand at 200.601 kb on + strand at 200.602 kb on - strand at 200.610 kb on + strand at 200.613 kb on + strand at 200.632 kb on - strand at 200.669 kb on + strand at 200.669 kb on + strand at 200.670 kb on - strand at 200.761 kb on + strand at 200.765 kb on - strand at 200.773 kb on + strand at 200.788 kb on + strand at 200.793 kb on - strand at 200.827 kb on + strand at 200.828 kb on - strand at 200.834 kb on + strand at 200.995 kb on - strand at 201.011 kb on + strand at 201.027 kb on + strand at 201.084 kb on - strand, within EX28DRAFT_3537 at 201.197 kb on + strand, within EX28DRAFT_3537 at 201.210 kb on + strand, within EX28DRAFT_3537 at 201.304 kb on - strand, within EX28DRAFT_3537 at 201.333 kb on + strand, within EX28DRAFT_3537 at 201.555 kb on + strand, within EX28DRAFT_3537 at 201.714 kb on + strand, within EX28DRAFT_3537 at 201.742 kb on + strand, within EX28DRAFT_3537 at 201.820 kb on + strand at 201.879 kb on + strand at 201.880 kb on - strand at 201.893 kb on - strand at 201.894 kb on + strand at 201.898 kb on + strand at 201.898 kb on + strand at 201.903 kb on - strand at 201.975 kb on + strand at 201.975 kb on + strand at 201.976 kb on - strand at 202.002 kb on + strand at 202.111 kb on + strand, within EX28DRAFT_3538 at 202.111 kb on + strand, within EX28DRAFT_3538 at 202.112 kb on - strand, within EX28DRAFT_3538 at 202.145 kb on + strand, within EX28DRAFT_3538 at 202.166 kb on - strand, within EX28DRAFT_3538 at 202.166 kb on - strand, within EX28DRAFT_3538 at 202.564 kb on - strand at 202.771 kb on - strand, within EX28DRAFT_3539
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 199,969 + EX28DRAFT_3536 0.63 -0.2 199,970 - EX28DRAFT_3536 0.63 -0.0 199,970 - EX28DRAFT_3536 0.63 +1.3 199,996 + EX28DRAFT_3536 0.64 +0.3 200,064 + EX28DRAFT_3536 0.67 +0.1 200,064 + EX28DRAFT_3536 0.67 +0.3 200,089 + EX28DRAFT_3536 0.68 -1.9 200,139 + EX28DRAFT_3536 0.71 +0.7 200,140 - EX28DRAFT_3536 0.71 +0.2 200,140 - EX28DRAFT_3536 0.71 +0.8 200,365 + EX28DRAFT_3536 0.81 -0.0 200,509 - EX28DRAFT_3536 0.88 +0.4 200,526 + EX28DRAFT_3536 0.89 -0.3 200,526 + EX28DRAFT_3536 0.89 +1.0 200,527 - EX28DRAFT_3536 0.89 +0.3 200,601 + -0.5 200,601 + +0.1 200,602 - -0.0 200,610 + -0.1 200,613 + +0.5 200,632 - -0.3 200,669 + -2.5 200,669 + +0.0 200,670 - -2.2 200,761 + -0.8 200,765 - -2.6 200,773 + -0.4 200,788 + +0.5 200,793 - -0.1 200,827 + +0.5 200,828 - +0.6 200,834 + -0.4 200,995 - +0.8 201,011 + +0.4 201,027 + -0.9 201,084 - EX28DRAFT_3537 0.13 -2.4 201,197 + EX28DRAFT_3537 0.26 +1.5 201,210 + EX28DRAFT_3537 0.27 -1.1 201,304 - EX28DRAFT_3537 0.37 -0.7 201,333 + EX28DRAFT_3537 0.40 -2.7 201,555 + EX28DRAFT_3537 0.65 -1.1 201,714 + EX28DRAFT_3537 0.82 -0.4 201,742 + EX28DRAFT_3537 0.85 -0.7 201,820 + -0.0 201,879 + +1.0 201,880 - +0.0 201,893 - -0.8 201,894 + -0.8 201,898 + +0.3 201,898 + -2.5 201,903 - +0.4 201,975 + +0.0 201,975 + +0.0 201,976 - -2.3 202,002 + +0.1 202,111 + EX28DRAFT_3538 0.10 -0.1 202,111 + EX28DRAFT_3538 0.10 -0.4 202,112 - EX28DRAFT_3538 0.10 -0.0 202,145 + EX28DRAFT_3538 0.17 -1.6 202,166 - EX28DRAFT_3538 0.21 +2.4 202,166 - EX28DRAFT_3538 0.21 -0.5 202,564 - +0.0 202,771 - EX28DRAFT_3539 0.12 -0.5
Or see this region's nucleotide sequence