Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3493 and EX28DRAFT_3494 are separated by 185 nucleotides EX28DRAFT_3494 and EX28DRAFT_3495 are separated by 50 nucleotides
EX28DRAFT_3493: EX28DRAFT_3493 - Transcriptional regulators, at 155,691 to 156,698
_3493
EX28DRAFT_3494: EX28DRAFT_3494 - Sugar-binding cellulase-like, at 156,884 to 157,972
_3494
EX28DRAFT_3495: EX28DRAFT_3495 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 158,023 to 159,417
_3495
Position (kb) 156
157
158 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 156.832 kb on + strand at 156.833 kb on - strand at 156.833 kb on - strand at 156.923 kb on + strand at 156.952 kb on + strand at 156.953 kb on - strand at 156.953 kb on - strand at 156.953 kb on - strand at 156.956 kb on + strand at 157.218 kb on - strand, within EX28DRAFT_3494 at 157.328 kb on + strand, within EX28DRAFT_3494 at 157.328 kb on + strand, within EX28DRAFT_3494 at 157.329 kb on - strand, within EX28DRAFT_3494 at 157.389 kb on - strand, within EX28DRAFT_3494 at 157.930 kb on - strand at 157.970 kb on + strand at 157.973 kb on + strand at 157.973 kb on + strand at 157.974 kb on - strand at 157.976 kb on + strand at 158.016 kb on + strand at 158.016 kb on + strand at 158.017 kb on - strand at 158.017 kb on - strand at 158.017 kb on - strand at 158.018 kb on + strand at 158.018 kb on + strand at 158.018 kb on + strand at 158.018 kb on + strand at 158.018 kb on + strand at 158.018 kb on + strand at 158.019 kb on - strand at 158.019 kb on - strand at 158.019 kb on - strand at 158.095 kb on - strand at 158.118 kb on + strand at 158.119 kb on - strand at 158.122 kb on - strand at 158.125 kb on + strand at 158.126 kb on - strand at 158.131 kb on + strand at 158.323 kb on - strand, within EX28DRAFT_3495 at 158.371 kb on + strand, within EX28DRAFT_3495 at 158.371 kb on + strand, within EX28DRAFT_3495 at 158.371 kb on + strand, within EX28DRAFT_3495 at 158.371 kb on + strand, within EX28DRAFT_3495 at 158.371 kb on + strand, within EX28DRAFT_3495 at 158.371 kb on + strand, within EX28DRAFT_3495 at 158.371 kb on + strand, within EX28DRAFT_3495 at 158.371 kb on + strand, within EX28DRAFT_3495 at 158.371 kb on + strand, within EX28DRAFT_3495 at 158.372 kb on - strand, within EX28DRAFT_3495 at 158.392 kb on + strand, within EX28DRAFT_3495 at 158.392 kb on + strand, within EX28DRAFT_3495 at 158.552 kb on - strand, within EX28DRAFT_3495 at 158.569 kb on + strand, within EX28DRAFT_3495 at 158.575 kb on - strand, within EX28DRAFT_3495 at 158.575 kb on - strand, within EX28DRAFT_3495 at 158.628 kb on + strand, within EX28DRAFT_3495 at 158.779 kb on - strand, within EX28DRAFT_3495 at 158.907 kb on + strand, within EX28DRAFT_3495 at 158.908 kb on - strand, within EX28DRAFT_3495 at 158.908 kb on - strand, within EX28DRAFT_3495
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 156,832 + -0.2 156,833 - +0.6 156,833 - -0.4 156,923 + +0.3 156,952 + +0.4 156,953 - +0.3 156,953 - -3.1 156,953 - -0.4 156,956 + -0.0 157,218 - EX28DRAFT_3494 0.31 -0.6 157,328 + EX28DRAFT_3494 0.41 +0.7 157,328 + EX28DRAFT_3494 0.41 -0.5 157,329 - EX28DRAFT_3494 0.41 -0.2 157,389 - EX28DRAFT_3494 0.46 -0.2 157,930 - +0.5 157,970 + -1.9 157,973 + -0.3 157,973 + +0.6 157,974 - -3.6 157,976 + -0.4 158,016 + -0.8 158,016 + +0.5 158,017 - +0.0 158,017 - +1.2 158,017 - +1.2 158,018 + -0.0 158,018 + -0.1 158,018 + -0.3 158,018 + -0.6 158,018 + +0.4 158,018 + -0.6 158,019 - -0.2 158,019 - -0.5 158,019 - +0.3 158,095 - +0.4 158,118 + -1.1 158,119 - +0.1 158,122 - -1.3 158,125 + +0.2 158,126 - -0.2 158,131 + -1.4 158,323 - EX28DRAFT_3495 0.22 +1.2 158,371 + EX28DRAFT_3495 0.25 +0.9 158,371 + EX28DRAFT_3495 0.25 +0.6 158,371 + EX28DRAFT_3495 0.25 -0.4 158,371 + EX28DRAFT_3495 0.25 +0.3 158,371 + EX28DRAFT_3495 0.25 +0.5 158,371 + EX28DRAFT_3495 0.25 +0.7 158,371 + EX28DRAFT_3495 0.25 +0.5 158,371 + EX28DRAFT_3495 0.25 +0.3 158,371 + EX28DRAFT_3495 0.25 -0.4 158,372 - EX28DRAFT_3495 0.25 -0.1 158,392 + EX28DRAFT_3495 0.26 -0.5 158,392 + EX28DRAFT_3495 0.26 +0.3 158,552 - EX28DRAFT_3495 0.38 +0.7 158,569 + EX28DRAFT_3495 0.39 -0.2 158,575 - EX28DRAFT_3495 0.40 -0.2 158,575 - EX28DRAFT_3495 0.40 -0.6 158,628 + EX28DRAFT_3495 0.43 -0.7 158,779 - EX28DRAFT_3495 0.54 -0.3 158,907 + EX28DRAFT_3495 0.63 +0.9 158,908 - EX28DRAFT_3495 0.63 +0.4 158,908 - EX28DRAFT_3495 0.63 -0.1
Or see this region's nucleotide sequence