Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3491 and EX28DRAFT_3492 are separated by 199 nucleotides EX28DRAFT_3492 and EX28DRAFT_3493 overlap by 15 nucleotides EX28DRAFT_3493 and EX28DRAFT_3494 are separated by 185 nucleotides
EX28DRAFT_3491: EX28DRAFT_3491 - tryptophanyl-tRNA synthetase (EC 6.1.1.2), at 154,079 to 155,080
_3491
EX28DRAFT_3492: EX28DRAFT_3492 - Lactoylglutathione lyase and related lyases, at 155,280 to 155,705
_3492
EX28DRAFT_3493: EX28DRAFT_3493 - Transcriptional regulators, at 155,691 to 156,698
_3493
EX28DRAFT_3494: EX28DRAFT_3494 - Sugar-binding cellulase-like, at 156,884 to 157,972
_3494
Position (kb) 155
156
157 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 154.696 kb on + strand, within EX28DRAFT_3491 at 154.696 kb on + strand, within EX28DRAFT_3491 at 154.697 kb on - strand, within EX28DRAFT_3491 at 154.792 kb on + strand, within EX28DRAFT_3491 at 154.792 kb on + strand, within EX28DRAFT_3491 at 154.792 kb on + strand, within EX28DRAFT_3491 at 154.793 kb on - strand, within EX28DRAFT_3491 at 154.794 kb on + strand, within EX28DRAFT_3491 at 154.795 kb on - strand, within EX28DRAFT_3491 at 154.795 kb on - strand, within EX28DRAFT_3491 at 154.795 kb on - strand, within EX28DRAFT_3491 at 155.092 kb on - strand at 155.226 kb on + strand at 155.227 kb on - strand at 155.227 kb on - strand at 155.394 kb on + strand, within EX28DRAFT_3492 at 155.394 kb on + strand, within EX28DRAFT_3492 at 155.448 kb on + strand, within EX28DRAFT_3492 at 155.449 kb on - strand, within EX28DRAFT_3492 at 155.473 kb on - strand, within EX28DRAFT_3492 at 155.490 kb on - strand, within EX28DRAFT_3492 at 155.687 kb on + strand at 155.687 kb on + strand at 155.687 kb on + strand at 155.713 kb on - strand at 156.832 kb on + strand at 156.833 kb on - strand at 156.833 kb on - strand at 156.923 kb on + strand at 156.952 kb on + strand at 156.953 kb on - strand at 156.953 kb on - strand at 156.953 kb on - strand at 156.956 kb on + strand at 157.218 kb on - strand, within EX28DRAFT_3494 at 157.328 kb on + strand, within EX28DRAFT_3494 at 157.328 kb on + strand, within EX28DRAFT_3494 at 157.329 kb on - strand, within EX28DRAFT_3494 at 157.389 kb on - strand, within EX28DRAFT_3494
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 154,696 + EX28DRAFT_3491 0.62 -0.3 154,696 + EX28DRAFT_3491 0.62 +0.9 154,697 - EX28DRAFT_3491 0.62 +1.2 154,792 + EX28DRAFT_3491 0.71 +0.3 154,792 + EX28DRAFT_3491 0.71 +0.1 154,792 + EX28DRAFT_3491 0.71 +0.2 154,793 - EX28DRAFT_3491 0.71 -1.1 154,794 + EX28DRAFT_3491 0.71 +0.8 154,795 - EX28DRAFT_3491 0.71 +0.3 154,795 - EX28DRAFT_3491 0.71 +0.2 154,795 - EX28DRAFT_3491 0.71 -1.6 155,092 - +0.2 155,226 + -0.2 155,227 - +0.1 155,227 - -0.3 155,394 + EX28DRAFT_3492 0.27 -0.1 155,394 + EX28DRAFT_3492 0.27 +0.3 155,448 + EX28DRAFT_3492 0.39 -0.3 155,449 - EX28DRAFT_3492 0.40 -0.5 155,473 - EX28DRAFT_3492 0.45 -3.1 155,490 - EX28DRAFT_3492 0.49 -0.3 155,687 + -0.0 155,687 + -0.4 155,687 + +0.3 155,713 - +2.8 156,832 + -0.2 156,833 - +0.6 156,833 - -0.4 156,923 + +0.3 156,952 + +0.4 156,953 - +0.3 156,953 - -3.1 156,953 - -0.4 156,956 + -0.0 157,218 - EX28DRAFT_3494 0.31 -0.6 157,328 + EX28DRAFT_3494 0.41 +0.7 157,328 + EX28DRAFT_3494 0.41 -0.5 157,329 - EX28DRAFT_3494 0.41 -0.2 157,389 - EX28DRAFT_3494 0.46 -0.2
Or see this region's nucleotide sequence