Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3449 and EX28DRAFT_3450 are separated by 47 nucleotides EX28DRAFT_3450 and EX28DRAFT_3451 are separated by 119 nucleotides
EX28DRAFT_3449: EX28DRAFT_3449 - Predicted membrane protein, at 120,673 to 122,076
_3449
EX28DRAFT_3450: EX28DRAFT_3450 - ornithine carbamoyltransferase, at 122,124 to 123,128
_3450
EX28DRAFT_3451: EX28DRAFT_3451 - carbamate kinase, at 123,248 to 124,159
_3451
Position (kb) 122
123
124 Strain fitness (log2 ratio) -2
-1
0
1
2 at 121.637 kb on + strand, within EX28DRAFT_3449 at 121.637 kb on + strand, within EX28DRAFT_3449 at 122.049 kb on - strand at 122.088 kb on + strand at 122.126 kb on - strand at 122.366 kb on - strand, within EX28DRAFT_3450 at 122.417 kb on + strand, within EX28DRAFT_3450 at 122.417 kb on + strand, within EX28DRAFT_3450 at 122.644 kb on + strand, within EX28DRAFT_3450 at 122.824 kb on + strand, within EX28DRAFT_3450 at 122.824 kb on + strand, within EX28DRAFT_3450 at 122.824 kb on + strand, within EX28DRAFT_3450 at 122.824 kb on + strand, within EX28DRAFT_3450 at 122.824 kb on + strand, within EX28DRAFT_3450 at 122.825 kb on - strand, within EX28DRAFT_3450 at 122.825 kb on - strand, within EX28DRAFT_3450 at 122.825 kb on - strand, within EX28DRAFT_3450 at 122.868 kb on - strand, within EX28DRAFT_3450 at 122.899 kb on + strand, within EX28DRAFT_3450 at 123.082 kb on + strand at 123.082 kb on + strand at 123.200 kb on + strand at 123.200 kb on + strand at 123.200 kb on + strand at 123.200 kb on + strand at 123.200 kb on + strand at 123.200 kb on + strand at 123.702 kb on + strand, within EX28DRAFT_3451 at 123.702 kb on + strand, within EX28DRAFT_3451 at 123.702 kb on + strand, within EX28DRAFT_3451 at 123.768 kb on + strand, within EX28DRAFT_3451 at 123.768 kb on + strand, within EX28DRAFT_3451 at 123.783 kb on + strand, within EX28DRAFT_3451 at 123.783 kb on + strand, within EX28DRAFT_3451 at 123.783 kb on + strand, within EX28DRAFT_3451 at 123.894 kb on + strand, within EX28DRAFT_3451
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 121,637 + EX28DRAFT_3449 0.69 -2.1 121,637 + EX28DRAFT_3449 0.69 +0.3 122,049 - -0.3 122,088 + -0.2 122,126 - -1.2 122,366 - EX28DRAFT_3450 0.24 -1.3 122,417 + EX28DRAFT_3450 0.29 +0.1 122,417 + EX28DRAFT_3450 0.29 -2.5 122,644 + EX28DRAFT_3450 0.52 +0.1 122,824 + EX28DRAFT_3450 0.70 +1.5 122,824 + EX28DRAFT_3450 0.70 +0.2 122,824 + EX28DRAFT_3450 0.70 -1.6 122,824 + EX28DRAFT_3450 0.70 +0.3 122,824 + EX28DRAFT_3450 0.70 +0.6 122,825 - EX28DRAFT_3450 0.70 -1.5 122,825 - EX28DRAFT_3450 0.70 -0.2 122,825 - EX28DRAFT_3450 0.70 -0.2 122,868 - EX28DRAFT_3450 0.74 -2.0 122,899 + EX28DRAFT_3450 0.77 -0.5 123,082 + +0.1 123,082 + +0.6 123,200 + -1.3 123,200 + -1.6 123,200 + +0.2 123,200 + -1.7 123,200 + -0.3 123,200 + +0.0 123,702 + EX28DRAFT_3451 0.50 +2.1 123,702 + EX28DRAFT_3451 0.50 -0.0 123,702 + EX28DRAFT_3451 0.50 +1.5 123,768 + EX28DRAFT_3451 0.57 -1.4 123,768 + EX28DRAFT_3451 0.57 -0.3 123,783 + EX28DRAFT_3451 0.59 -1.5 123,783 + EX28DRAFT_3451 0.59 -0.5 123,783 + EX28DRAFT_3451 0.59 -0.4 123,894 + EX28DRAFT_3451 0.71 +0.6
Or see this region's nucleotide sequence