Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3406 and EX28DRAFT_3407 overlap by 4 nucleotides EX28DRAFT_3407 and EX28DRAFT_3408 are separated by 2 nucleotides EX28DRAFT_3408 and EX28DRAFT_3409 are separated by 44 nucleotides EX28DRAFT_3409 and EX28DRAFT_3410 overlap by 53 nucleotides
EX28DRAFT_3406: EX28DRAFT_3406 - Outer membrane protein, at 75,309 to 77,042
_3406
EX28DRAFT_3407: EX28DRAFT_3407 - Uncharacterized protein conserved in bacteria, at 77,039 to 80,815
_3407
EX28DRAFT_3408: EX28DRAFT_3408 - Uncharacterized conserved protein, at 80,818 to 81,162
_3408
EX28DRAFT_3409: EX28DRAFT_3409 - hypothetical protein, at 81,207 to 81,530
_3409
EX28DRAFT_3410: EX28DRAFT_3410 - hypothetical protein, at 81,478 to 81,948
_3410
Position (kb) 77
78
79
80
81 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 76.287 kb on + strand, within EX28DRAFT_3406 at 76.288 kb on - strand, within EX28DRAFT_3406 at 76.288 kb on - strand, within EX28DRAFT_3406 at 76.288 kb on - strand, within EX28DRAFT_3406 at 76.290 kb on + strand, within EX28DRAFT_3406 at 76.290 kb on + strand, within EX28DRAFT_3406 at 76.290 kb on + strand, within EX28DRAFT_3406 at 76.290 kb on + strand, within EX28DRAFT_3406 at 76.291 kb on - strand, within EX28DRAFT_3406 at 76.291 kb on - strand, within EX28DRAFT_3406 at 76.291 kb on - strand, within EX28DRAFT_3406 at 76.291 kb on - strand, within EX28DRAFT_3406 at 76.291 kb on - strand, within EX28DRAFT_3406 at 76.346 kb on + strand, within EX28DRAFT_3406 at 76.430 kb on + strand, within EX28DRAFT_3406 at 76.627 kb on - strand, within EX28DRAFT_3406 at 76.744 kb on - strand, within EX28DRAFT_3406 at 76.745 kb on + strand, within EX28DRAFT_3406 at 76.745 kb on + strand, within EX28DRAFT_3406 at 76.745 kb on + strand, within EX28DRAFT_3406 at 76.746 kb on - strand, within EX28DRAFT_3406 at 76.746 kb on - strand, within EX28DRAFT_3406 at 76.746 kb on - strand, within EX28DRAFT_3406 at 76.750 kb on - strand, within EX28DRAFT_3406 at 76.750 kb on - strand, within EX28DRAFT_3406 at 76.750 kb on - strand, within EX28DRAFT_3406 at 76.830 kb on + strand, within EX28DRAFT_3406 at 76.831 kb on - strand, within EX28DRAFT_3406 at 76.831 kb on - strand, within EX28DRAFT_3406 at 76.911 kb on - strand at 76.934 kb on - strand at 77.008 kb on + strand at 77.016 kb on + strand at 77.016 kb on + strand at 77.016 kb on + strand at 77.017 kb on - strand at 77.017 kb on - strand at 77.017 kb on - strand at 77.047 kb on - strand at 77.059 kb on - strand at 77.331 kb on + strand at 77.352 kb on + strand at 77.468 kb on - strand, within EX28DRAFT_3407 at 77.795 kb on + strand, within EX28DRAFT_3407 at 77.927 kb on - strand, within EX28DRAFT_3407 at 77.933 kb on - strand, within EX28DRAFT_3407 at 77.933 kb on - strand, within EX28DRAFT_3407 at 77.980 kb on - strand, within EX28DRAFT_3407 at 77.980 kb on - strand, within EX28DRAFT_3407 at 78.395 kb on - strand, within EX28DRAFT_3407 at 78.464 kb on + strand, within EX28DRAFT_3407 at 78.499 kb on + strand, within EX28DRAFT_3407 at 78.563 kb on + strand, within EX28DRAFT_3407 at 78.564 kb on - strand, within EX28DRAFT_3407 at 78.564 kb on - strand, within EX28DRAFT_3407 at 78.564 kb on - strand, within EX28DRAFT_3407 at 78.564 kb on - strand, within EX28DRAFT_3407 at 78.564 kb on - strand, within EX28DRAFT_3407 at 78.773 kb on - strand, within EX28DRAFT_3407 at 78.908 kb on - strand, within EX28DRAFT_3407 at 79.063 kb on + strand, within EX28DRAFT_3407 at 79.262 kb on - strand, within EX28DRAFT_3407 at 79.451 kb on - strand, within EX28DRAFT_3407 at 79.543 kb on + strand, within EX28DRAFT_3407 at 79.571 kb on - strand, within EX28DRAFT_3407 at 79.718 kb on - strand, within EX28DRAFT_3407 at 79.797 kb on + strand, within EX28DRAFT_3407 at 80.059 kb on + strand, within EX28DRAFT_3407 at 80.083 kb on + strand, within EX28DRAFT_3407 at 80.116 kb on + strand, within EX28DRAFT_3407 at 80.116 kb on + strand, within EX28DRAFT_3407 at 80.119 kb on + strand, within EX28DRAFT_3407 at 80.119 kb on + strand, within EX28DRAFT_3407 at 80.119 kb on + strand, within EX28DRAFT_3407 at 80.119 kb on + strand, within EX28DRAFT_3407 at 80.120 kb on - strand, within EX28DRAFT_3407 at 80.120 kb on - strand, within EX28DRAFT_3407 at 80.120 kb on - strand, within EX28DRAFT_3407 at 80.120 kb on - strand, within EX28DRAFT_3407 at 80.210 kb on - strand, within EX28DRAFT_3407 at 80.242 kb on + strand, within EX28DRAFT_3407 at 80.471 kb on + strand at 80.598 kb on + strand at 80.660 kb on + strand at 80.660 kb on + strand at 80.664 kb on + strand at 80.664 kb on + strand at 80.664 kb on + strand at 80.664 kb on + strand at 80.664 kb on + strand at 80.664 kb on + strand at 80.664 kb on + strand at 80.665 kb on - strand at 80.665 kb on - strand at 80.682 kb on + strand at 80.687 kb on + strand at 80.688 kb on - strand at 80.688 kb on - strand at 80.728 kb on - strand at 80.751 kb on + strand at 80.751 kb on + strand at 80.751 kb on + strand at 80.751 kb on + strand at 80.751 kb on + strand at 80.751 kb on + strand at 80.751 kb on + strand at 80.752 kb on - strand at 80.752 kb on - strand at 80.753 kb on + strand at 80.753 kb on + strand at 80.775 kb on + strand at 80.799 kb on - strand at 80.799 kb on - strand at 80.814 kb on - strand at 80.899 kb on + strand, within EX28DRAFT_3408 at 81.089 kb on - strand, within EX28DRAFT_3408 at 81.094 kb on + strand, within EX28DRAFT_3408 at 81.095 kb on - strand, within EX28DRAFT_3408 at 81.135 kb on + strand at 81.266 kb on - strand, within EX28DRAFT_3409 at 81.318 kb on + strand, within EX28DRAFT_3409 at 81.318 kb on + strand, within EX28DRAFT_3409 at 81.329 kb on + strand, within EX28DRAFT_3409 at 81.380 kb on - strand, within EX28DRAFT_3409 at 81.402 kb on + strand, within EX28DRAFT_3409 at 81.402 kb on + strand, within EX28DRAFT_3409 at 81.403 kb on - strand, within EX28DRAFT_3409 at 81.403 kb on - strand, within EX28DRAFT_3409 at 81.406 kb on + strand, within EX28DRAFT_3409 at 81.406 kb on + strand, within EX28DRAFT_3409 at 81.407 kb on - strand, within EX28DRAFT_3409 at 81.505 kb on - strand at 81.532 kb on + strand, within EX28DRAFT_3410 at 81.533 kb on - strand, within EX28DRAFT_3410
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 76,287 + EX28DRAFT_3406 0.56 -0.1 76,288 - EX28DRAFT_3406 0.56 +0.3 76,288 - EX28DRAFT_3406 0.56 -1.0 76,288 - EX28DRAFT_3406 0.56 +0.6 76,290 + EX28DRAFT_3406 0.57 +0.6 76,290 + EX28DRAFT_3406 0.57 -0.2 76,290 + EX28DRAFT_3406 0.57 -0.8 76,290 + EX28DRAFT_3406 0.57 -0.0 76,291 - EX28DRAFT_3406 0.57 -0.0 76,291 - EX28DRAFT_3406 0.57 -0.2 76,291 - EX28DRAFT_3406 0.57 +1.5 76,291 - EX28DRAFT_3406 0.57 -0.5 76,291 - EX28DRAFT_3406 0.57 +2.2 76,346 + EX28DRAFT_3406 0.60 +1.0 76,430 + EX28DRAFT_3406 0.65 +0.1 76,627 - EX28DRAFT_3406 0.76 +0.3 76,744 - EX28DRAFT_3406 0.83 -0.2 76,745 + EX28DRAFT_3406 0.83 +0.6 76,745 + EX28DRAFT_3406 0.83 -0.0 76,745 + EX28DRAFT_3406 0.83 -0.6 76,746 - EX28DRAFT_3406 0.83 +0.1 76,746 - EX28DRAFT_3406 0.83 -0.3 76,746 - EX28DRAFT_3406 0.83 -0.3 76,750 - EX28DRAFT_3406 0.83 +0.5 76,750 - EX28DRAFT_3406 0.83 +1.5 76,750 - EX28DRAFT_3406 0.83 +0.2 76,830 + EX28DRAFT_3406 0.88 +0.7 76,831 - EX28DRAFT_3406 0.88 +3.0 76,831 - EX28DRAFT_3406 0.88 +0.5 76,911 - -0.3 76,934 - +1.4 77,008 + +0.2 77,016 + -0.2 77,016 + +2.5 77,016 + +0.3 77,017 - +1.9 77,017 - +1.5 77,017 - -0.8 77,047 - +0.3 77,059 - -0.3 77,331 + +0.3 77,352 + +0.2 77,468 - EX28DRAFT_3407 0.11 -1.1 77,795 + EX28DRAFT_3407 0.20 -3.6 77,927 - EX28DRAFT_3407 0.24 +1.3 77,933 - EX28DRAFT_3407 0.24 +0.1 77,933 - EX28DRAFT_3407 0.24 +0.7 77,980 - EX28DRAFT_3407 0.25 +3.2 77,980 - EX28DRAFT_3407 0.25 -0.8 78,395 - EX28DRAFT_3407 0.36 -0.5 78,464 + EX28DRAFT_3407 0.38 +0.6 78,499 + EX28DRAFT_3407 0.39 +0.6 78,563 + EX28DRAFT_3407 0.40 +0.0 78,564 - EX28DRAFT_3407 0.40 +0.0 78,564 - EX28DRAFT_3407 0.40 +0.5 78,564 - EX28DRAFT_3407 0.40 +1.0 78,564 - EX28DRAFT_3407 0.40 -0.5 78,564 - EX28DRAFT_3407 0.40 -0.1 78,773 - EX28DRAFT_3407 0.46 +1.1 78,908 - EX28DRAFT_3407 0.49 -0.3 79,063 + EX28DRAFT_3407 0.54 -1.1 79,262 - EX28DRAFT_3407 0.59 +1.5 79,451 - EX28DRAFT_3407 0.64 +0.3 79,543 + EX28DRAFT_3407 0.66 -0.1 79,571 - EX28DRAFT_3407 0.67 +0.6 79,718 - EX28DRAFT_3407 0.71 +0.8 79,797 + EX28DRAFT_3407 0.73 +0.2 80,059 + EX28DRAFT_3407 0.80 +0.0 80,083 + EX28DRAFT_3407 0.81 -2.5 80,116 + EX28DRAFT_3407 0.81 -0.6 80,116 + EX28DRAFT_3407 0.81 +1.0 80,119 + EX28DRAFT_3407 0.82 -2.2 80,119 + EX28DRAFT_3407 0.82 +0.8 80,119 + EX28DRAFT_3407 0.82 +1.2 80,119 + EX28DRAFT_3407 0.82 -1.7 80,120 - EX28DRAFT_3407 0.82 -0.7 80,120 - EX28DRAFT_3407 0.82 +0.3 80,120 - EX28DRAFT_3407 0.82 +0.0 80,120 - EX28DRAFT_3407 0.82 +0.3 80,210 - EX28DRAFT_3407 0.84 +0.8 80,242 + EX28DRAFT_3407 0.85 +0.2 80,471 + +0.1 80,598 + +0.1 80,660 + +1.1 80,660 + -0.4 80,664 + -0.3 80,664 + -0.0 80,664 + -0.5 80,664 + -0.5 80,664 + +1.5 80,664 + +0.2 80,664 + +0.5 80,665 - -0.5 80,665 - +0.4 80,682 + -0.2 80,687 + -2.7 80,688 - -0.8 80,688 - +0.9 80,728 - -0.7 80,751 + +0.7 80,751 + +0.1 80,751 + +0.7 80,751 + -0.1 80,751 + +0.4 80,751 + -0.5 80,751 + +0.3 80,752 - +0.3 80,752 - -0.1 80,753 + -0.1 80,753 + -0.1 80,775 + -0.1 80,799 - +0.1 80,799 - +0.1 80,814 - -0.1 80,899 + EX28DRAFT_3408 0.23 +3.0 81,089 - EX28DRAFT_3408 0.79 -0.5 81,094 + EX28DRAFT_3408 0.80 -0.2 81,095 - EX28DRAFT_3408 0.80 -1.7 81,135 + -3.1 81,266 - EX28DRAFT_3409 0.18 -1.0 81,318 + EX28DRAFT_3409 0.34 -0.9 81,318 + EX28DRAFT_3409 0.34 -0.7 81,329 + EX28DRAFT_3409 0.38 -0.0 81,380 - EX28DRAFT_3409 0.53 -0.1 81,402 + EX28DRAFT_3409 0.60 -0.8 81,402 + EX28DRAFT_3409 0.60 +0.9 81,403 - EX28DRAFT_3409 0.60 +0.5 81,403 - EX28DRAFT_3409 0.60 -1.2 81,406 + EX28DRAFT_3409 0.61 -0.8 81,406 + EX28DRAFT_3409 0.61 -0.5 81,407 - EX28DRAFT_3409 0.62 +0.5 81,505 - -0.8 81,532 + EX28DRAFT_3410 0.11 +0.1 81,533 - EX28DRAFT_3410 0.12 -0.1
Or see this region's nucleotide sequence