Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3183 and EX28DRAFT_3184 are separated by 374 nucleotides EX28DRAFT_3184 and EX28DRAFT_3185 are separated by 72 nucleotides
EX28DRAFT_3183: EX28DRAFT_3183 - 2-dehydro-3-deoxyglucarate aldolase, at 483,270 to 484,040
_3183
EX28DRAFT_3184: EX28DRAFT_3184 - galactarate dehydratase, at 484,415 to 485,986
_3184
EX28DRAFT_3185: EX28DRAFT_3185 - transcriptional regulator, DeoR family, at 486,059 to 486,862
_3185
Position (kb) 484
485
486 Strain fitness (log2 ratio) -2
-1
0
1
2 at 483.525 kb on - strand, within EX28DRAFT_3183 at 483.628 kb on + strand, within EX28DRAFT_3183 at 483.711 kb on + strand, within EX28DRAFT_3183 at 483.711 kb on + strand, within EX28DRAFT_3183 at 483.712 kb on - strand, within EX28DRAFT_3183 at 483.806 kb on + strand, within EX28DRAFT_3183 at 484.034 kb on + strand at 484.068 kb on + strand at 484.071 kb on - strand at 484.071 kb on - strand at 484.088 kb on + strand at 484.159 kb on - strand at 484.160 kb on + strand at 484.202 kb on - strand at 484.275 kb on - strand at 484.348 kb on - strand at 484.351 kb on + strand at 484.406 kb on + strand at 484.462 kb on - strand at 484.558 kb on + strand at 484.559 kb on - strand at 484.573 kb on + strand, within EX28DRAFT_3184 at 484.573 kb on + strand, within EX28DRAFT_3184 at 484.573 kb on + strand, within EX28DRAFT_3184 at 484.573 kb on + strand, within EX28DRAFT_3184 at 484.574 kb on - strand, within EX28DRAFT_3184 at 484.574 kb on - strand, within EX28DRAFT_3184 at 484.614 kb on + strand, within EX28DRAFT_3184 at 484.651 kb on + strand, within EX28DRAFT_3184 at 484.651 kb on + strand, within EX28DRAFT_3184 at 484.651 kb on + strand, within EX28DRAFT_3184 at 484.652 kb on - strand, within EX28DRAFT_3184 at 484.766 kb on + strand, within EX28DRAFT_3184 at 484.768 kb on + strand, within EX28DRAFT_3184 at 484.858 kb on - strand, within EX28DRAFT_3184 at 484.865 kb on + strand, within EX28DRAFT_3184 at 484.993 kb on + strand, within EX28DRAFT_3184 at 484.993 kb on + strand, within EX28DRAFT_3184 at 485.473 kb on + strand, within EX28DRAFT_3184 at 485.478 kb on - strand, within EX28DRAFT_3184 at 485.478 kb on - strand, within EX28DRAFT_3184 at 485.478 kb on - strand, within EX28DRAFT_3184 at 485.707 kb on + strand, within EX28DRAFT_3184 at 485.808 kb on - strand, within EX28DRAFT_3184 at 485.814 kb on + strand, within EX28DRAFT_3184 at 485.943 kb on + strand at 485.943 kb on + strand at 485.944 kb on - strand at 485.944 kb on - strand at 485.947 kb on + strand at 485.947 kb on + strand at 485.948 kb on - strand at 486.134 kb on - strand at 486.215 kb on - strand, within EX28DRAFT_3185 at 486.508 kb on - strand, within EX28DRAFT_3185 at 486.596 kb on - strand, within EX28DRAFT_3185 at 486.947 kb on - strand at 486.947 kb on - strand at 486.951 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 483,525 - EX28DRAFT_3183 0.33 +1.0 483,628 + EX28DRAFT_3183 0.46 +1.2 483,711 + EX28DRAFT_3183 0.57 -0.5 483,711 + EX28DRAFT_3183 0.57 +0.9 483,712 - EX28DRAFT_3183 0.57 +0.1 483,806 + EX28DRAFT_3183 0.70 -1.0 484,034 + -0.3 484,068 + +0.9 484,071 - +0.5 484,071 - +0.9 484,088 + -0.6 484,159 - -0.2 484,160 + -0.3 484,202 - +0.1 484,275 - +0.4 484,348 - +0.6 484,351 + +0.6 484,406 + +0.3 484,462 - +0.4 484,558 + +0.0 484,559 - +1.2 484,573 + EX28DRAFT_3184 0.10 +0.6 484,573 + EX28DRAFT_3184 0.10 +0.6 484,573 + EX28DRAFT_3184 0.10 +0.4 484,573 + EX28DRAFT_3184 0.10 -0.1 484,574 - EX28DRAFT_3184 0.10 -2.1 484,574 - EX28DRAFT_3184 0.10 +1.2 484,614 + EX28DRAFT_3184 0.13 -0.2 484,651 + EX28DRAFT_3184 0.15 +0.1 484,651 + EX28DRAFT_3184 0.15 -0.6 484,651 + EX28DRAFT_3184 0.15 +0.1 484,652 - EX28DRAFT_3184 0.15 +0.8 484,766 + EX28DRAFT_3184 0.22 +2.1 484,768 + EX28DRAFT_3184 0.22 +0.0 484,858 - EX28DRAFT_3184 0.28 +0.3 484,865 + EX28DRAFT_3184 0.29 -0.1 484,993 + EX28DRAFT_3184 0.37 +0.0 484,993 + EX28DRAFT_3184 0.37 +0.6 485,473 + EX28DRAFT_3184 0.67 +1.8 485,478 - EX28DRAFT_3184 0.68 +0.8 485,478 - EX28DRAFT_3184 0.68 +0.0 485,478 - EX28DRAFT_3184 0.68 +0.3 485,707 + EX28DRAFT_3184 0.82 +0.4 485,808 - EX28DRAFT_3184 0.89 -0.3 485,814 + EX28DRAFT_3184 0.89 +1.3 485,943 + -0.0 485,943 + -0.6 485,944 - +0.2 485,944 - -0.6 485,947 + -2.6 485,947 + -1.1 485,948 - +0.0 486,134 - +1.6 486,215 - EX28DRAFT_3185 0.19 -0.1 486,508 - EX28DRAFT_3185 0.56 +0.0 486,596 - EX28DRAFT_3185 0.67 -0.8 486,947 - -0.1 486,947 - +0.4 486,951 - +0.1
Or see this region's nucleotide sequence