Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3136 and EX28DRAFT_3137 are separated by 147 nucleotides EX28DRAFT_3137 and EX28DRAFT_3138 overlap by 4 nucleotides EX28DRAFT_3138 and EX28DRAFT_3139 are separated by 336 nucleotides
EX28DRAFT_3136: EX28DRAFT_3136 - Siderophore-interacting protein, at 435,907 to 436,671
_3136
EX28DRAFT_3137: EX28DRAFT_3137 - Predicted transcriptional regulators, at 436,819 to 437,313
_3137
EX28DRAFT_3138: EX28DRAFT_3138 - Methyl-accepting chemotaxis protein, at 437,310 to 438,869
_3138
EX28DRAFT_3139: EX28DRAFT_3139 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor, at 439,206 to 440,726
_3139
Position (kb) 437
438
439 Strain fitness (log2 ratio) -1
0
1
2 at 436.400 kb on + strand, within EX28DRAFT_3136 at 436.412 kb on + strand, within EX28DRAFT_3136 at 436.412 kb on + strand, within EX28DRAFT_3136 at 436.412 kb on + strand, within EX28DRAFT_3136 at 436.432 kb on + strand, within EX28DRAFT_3136 at 436.432 kb on + strand, within EX28DRAFT_3136 at 436.515 kb on + strand, within EX28DRAFT_3136 at 436.638 kb on + strand at 436.662 kb on + strand at 436.663 kb on - strand at 436.663 kb on - strand at 436.695 kb on - strand at 436.702 kb on - strand at 437.213 kb on + strand, within EX28DRAFT_3137 at 437.474 kb on + strand, within EX28DRAFT_3138 at 437.474 kb on + strand, within EX28DRAFT_3138 at 437.475 kb on - strand, within EX28DRAFT_3138 at 437.475 kb on - strand, within EX28DRAFT_3138 at 438.275 kb on + strand, within EX28DRAFT_3138 at 438.309 kb on - strand, within EX28DRAFT_3138 at 438.392 kb on + strand, within EX28DRAFT_3138 at 438.497 kb on - strand, within EX28DRAFT_3138 at 438.631 kb on + strand, within EX28DRAFT_3138 at 438.632 kb on - strand, within EX28DRAFT_3138 at 438.632 kb on - strand, within EX28DRAFT_3138 at 438.632 kb on - strand, within EX28DRAFT_3138 at 438.735 kb on - strand at 438.861 kb on + strand at 438.979 kb on - strand at 439.079 kb on + strand at 439.200 kb on - strand at 439.424 kb on + strand, within EX28DRAFT_3139 at 439.424 kb on + strand, within EX28DRAFT_3139 at 439.473 kb on + strand, within EX28DRAFT_3139 at 439.473 kb on + strand, within EX28DRAFT_3139 at 439.473 kb on + strand, within EX28DRAFT_3139 at 439.474 kb on - strand, within EX28DRAFT_3139 at 439.503 kb on - strand, within EX28DRAFT_3139 at 439.628 kb on + strand, within EX28DRAFT_3139
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 436,400 + EX28DRAFT_3136 0.64 -0.3 436,412 + EX28DRAFT_3136 0.66 +0.0 436,412 + EX28DRAFT_3136 0.66 -0.2 436,412 + EX28DRAFT_3136 0.66 +1.2 436,432 + EX28DRAFT_3136 0.69 -0.3 436,432 + EX28DRAFT_3136 0.69 +0.4 436,515 + EX28DRAFT_3136 0.79 -0.3 436,638 + +0.1 436,662 + +0.1 436,663 - -0.5 436,663 - +0.4 436,695 - -1.6 436,702 - +0.0 437,213 + EX28DRAFT_3137 0.80 -0.4 437,474 + EX28DRAFT_3138 0.11 -0.3 437,474 + EX28DRAFT_3138 0.11 +0.2 437,475 - EX28DRAFT_3138 0.11 -0.1 437,475 - EX28DRAFT_3138 0.11 -0.6 438,275 + EX28DRAFT_3138 0.62 +0.6 438,309 - EX28DRAFT_3138 0.64 -0.0 438,392 + EX28DRAFT_3138 0.69 +0.0 438,497 - EX28DRAFT_3138 0.76 -0.0 438,631 + EX28DRAFT_3138 0.85 -0.7 438,632 - EX28DRAFT_3138 0.85 +0.3 438,632 - EX28DRAFT_3138 0.85 -0.1 438,632 - EX28DRAFT_3138 0.85 -0.0 438,735 - +0.9 438,861 + -0.3 438,979 - +2.3 439,079 + +0.5 439,200 - +0.1 439,424 + EX28DRAFT_3139 0.14 +0.0 439,424 + EX28DRAFT_3139 0.14 +0.2 439,473 + EX28DRAFT_3139 0.18 +0.1 439,473 + EX28DRAFT_3139 0.18 -0.0 439,473 + EX28DRAFT_3139 0.18 +0.3 439,474 - EX28DRAFT_3139 0.18 +0.2 439,503 - EX28DRAFT_3139 0.20 +0.0 439,628 + EX28DRAFT_3139 0.28 -0.4
Or see this region's nucleotide sequence