Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2978 and EX28DRAFT_2979 are separated by 446 nucleotides EX28DRAFT_2979 and EX28DRAFT_2980 are separated by 138 nucleotides
EX28DRAFT_2978: EX28DRAFT_2978 - arginine decarboxylase (EC 4.1.1.19), at 289,940 to 291,916
_2978
EX28DRAFT_2979: EX28DRAFT_2979 - Protein of unknown function (DUF2684), at 292,363 to 292,581
_2979
EX28DRAFT_2980: EX28DRAFT_2980 - methionine adenosyltransferase (EC 2.5.1.6), at 292,720 to 293,874
_2980
Position (kb) 292
293 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 291.381 kb on + strand, within EX28DRAFT_2978 at 291.381 kb on + strand, within EX28DRAFT_2978 at 291.394 kb on + strand, within EX28DRAFT_2978 at 291.403 kb on + strand, within EX28DRAFT_2978 at 291.569 kb on - strand, within EX28DRAFT_2978 at 291.569 kb on - strand, within EX28DRAFT_2978 at 291.570 kb on + strand, within EX28DRAFT_2978 at 291.595 kb on + strand, within EX28DRAFT_2978 at 291.608 kb on - strand, within EX28DRAFT_2978 at 291.610 kb on + strand, within EX28DRAFT_2978 at 291.610 kb on + strand, within EX28DRAFT_2978 at 291.611 kb on - strand, within EX28DRAFT_2978 at 291.771 kb on + strand at 291.774 kb on + strand at 291.774 kb on + strand at 291.778 kb on + strand at 291.778 kb on + strand at 291.796 kb on + strand at 291.796 kb on + strand at 291.796 kb on + strand at 291.797 kb on - strand at 291.802 kb on - strand at 291.853 kb on + strand at 291.853 kb on + strand at 291.854 kb on - strand at 291.861 kb on - strand at 291.861 kb on - strand at 291.863 kb on + strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.936 kb on + strand at 291.939 kb on + strand at 291.939 kb on + strand at 291.958 kb on + strand at 292.018 kb on - strand at 292.050 kb on + strand at 292.087 kb on - strand at 292.123 kb on + strand at 292.198 kb on + strand at 292.224 kb on + strand at 292.415 kb on - strand, within EX28DRAFT_2979 at 292.467 kb on - strand, within EX28DRAFT_2979 at 292.533 kb on - strand, within EX28DRAFT_2979 at 292.599 kb on + strand at 292.601 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 291,381 + EX28DRAFT_2978 0.73 -2.7 291,381 + EX28DRAFT_2978 0.73 +0.2 291,394 + EX28DRAFT_2978 0.74 +1.1 291,403 + EX28DRAFT_2978 0.74 +0.5 291,569 - EX28DRAFT_2978 0.82 -0.4 291,569 - EX28DRAFT_2978 0.82 +0.3 291,570 + EX28DRAFT_2978 0.82 +0.4 291,595 + EX28DRAFT_2978 0.84 +0.4 291,608 - EX28DRAFT_2978 0.84 -0.1 291,610 + EX28DRAFT_2978 0.84 -0.1 291,610 + EX28DRAFT_2978 0.84 -0.5 291,611 - EX28DRAFT_2978 0.85 +0.8 291,771 + -1.5 291,774 + +0.6 291,774 + -0.9 291,778 + +0.5 291,778 + -5.0 291,796 + +0.1 291,796 + -1.1 291,796 + +0.1 291,797 - +0.8 291,802 - -0.2 291,853 + -2.0 291,853 + +1.9 291,854 - +0.5 291,861 - -0.5 291,861 - +0.6 291,863 + -0.2 291,864 - +0.5 291,864 - +0.7 291,864 - -2.2 291,936 + -0.4 291,939 + +0.5 291,939 + -0.6 291,958 + +0.0 292,018 - -1.9 292,050 + -1.3 292,087 - -0.2 292,123 + -0.3 292,198 + +0.2 292,224 + -0.4 292,415 - EX28DRAFT_2979 0.24 +0.0 292,467 - EX28DRAFT_2979 0.47 +0.1 292,533 - EX28DRAFT_2979 0.78 +1.6 292,599 + -2.4 292,601 + +0.0
Or see this region's nucleotide sequence