Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2961 and EX28DRAFT_2962 are separated by 168 nucleotides EX28DRAFT_2962 and EX28DRAFT_2963 are separated by 41 nucleotides EX28DRAFT_2963 and EX28DRAFT_2964 are separated by 24 nucleotides EX28DRAFT_2964 and EX28DRAFT_2965 are separated by 109 nucleotides
EX28DRAFT_2961: EX28DRAFT_2961 - yecA family protein, at 272,575 to 273,153
_2961
EX28DRAFT_2962: EX28DRAFT_2962 - Uncharacterized protein conserved in bacteria, at 273,322 to 273,651
_2962
EX28DRAFT_2963: EX28DRAFT_2963 - RNA, at 273,693 to 273,876
_2963
EX28DRAFT_2964: EX28DRAFT_2964 - 5,10-methenyltetrahydrofolate synthetase, at 273,901 to 274,497
_2964
EX28DRAFT_2965: EX28DRAFT_2965 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 274,607 to 275,839
_2965
Position (kb) 273
274 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 272.740 kb on - strand, within EX28DRAFT_2961 at 272.889 kb on - strand, within EX28DRAFT_2961 at 273.125 kb on + strand at 273.147 kb on + strand at 273.148 kb on - strand at 273.189 kb on - strand at 273.189 kb on - strand at 273.231 kb on + strand at 273.231 kb on + strand at 273.248 kb on - strand at 273.251 kb on + strand at 273.251 kb on + strand at 273.251 kb on + strand at 273.251 kb on + strand at 273.252 kb on - strand at 273.252 kb on - strand at 273.252 kb on - strand at 273.252 kb on - strand at 273.252 kb on - strand at 273.252 kb on - strand at 273.253 kb on + strand at 273.253 kb on + strand at 273.254 kb on - strand at 273.285 kb on - strand at 273.508 kb on + strand, within EX28DRAFT_2962 at 273.509 kb on - strand, within EX28DRAFT_2962 at 273.545 kb on - strand, within EX28DRAFT_2962 at 273.590 kb on + strand, within EX28DRAFT_2962 at 273.591 kb on - strand, within EX28DRAFT_2962 at 273.591 kb on - strand, within EX28DRAFT_2962 at 273.668 kb on - strand at 273.668 kb on - strand at 273.672 kb on + strand at 273.672 kb on + strand at 273.673 kb on - strand at 273.677 kb on + strand at 273.678 kb on - strand at 273.736 kb on + strand, within EX28DRAFT_2963 at 273.737 kb on - strand, within EX28DRAFT_2963 at 273.803 kb on - strand, within EX28DRAFT_2963 at 273.808 kb on + strand, within EX28DRAFT_2963 at 273.809 kb on - strand, within EX28DRAFT_2963 at 274.138 kb on + strand, within EX28DRAFT_2964 at 274.190 kb on - strand, within EX28DRAFT_2964 at 274.290 kb on + strand, within EX28DRAFT_2964 at 274.290 kb on + strand, within EX28DRAFT_2964 at 274.500 kb on + strand at 274.501 kb on - strand at 274.557 kb on + strand at 274.559 kb on + strand at 274.560 kb on - strand at 274.581 kb on - strand at 274.595 kb on - strand at 274.595 kb on - strand at 274.612 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 272,740 - EX28DRAFT_2961 0.28 +0.7 272,889 - EX28DRAFT_2961 0.54 +0.1 273,125 + -0.3 273,147 + -0.2 273,148 - -0.2 273,189 - +0.5 273,189 - +0.6 273,231 + -0.1 273,231 + -0.4 273,248 - -0.6 273,251 + +0.4 273,251 + +0.3 273,251 + +0.1 273,251 + +2.0 273,252 - +0.9 273,252 - +1.4 273,252 - +1.0 273,252 - +1.6 273,252 - +0.1 273,252 - -0.4 273,253 + +0.8 273,253 + +3.8 273,254 - +1.8 273,285 - +1.2 273,508 + EX28DRAFT_2962 0.56 -0.1 273,509 - EX28DRAFT_2962 0.57 -3.1 273,545 - EX28DRAFT_2962 0.68 -0.0 273,590 + EX28DRAFT_2962 0.81 -0.9 273,591 - EX28DRAFT_2962 0.82 -1.7 273,591 - EX28DRAFT_2962 0.82 +0.4 273,668 - -3.7 273,668 - -1.2 273,672 + -3.5 273,672 + -0.9 273,673 - -1.7 273,677 + -0.1 273,678 - -3.6 273,736 + EX28DRAFT_2963 0.23 -1.1 273,737 - EX28DRAFT_2963 0.24 -2.1 273,803 - EX28DRAFT_2963 0.60 -3.9 273,808 + EX28DRAFT_2963 0.62 -1.2 273,809 - EX28DRAFT_2963 0.63 -3.2 274,138 + EX28DRAFT_2964 0.40 -1.0 274,190 - EX28DRAFT_2964 0.48 -1.0 274,290 + EX28DRAFT_2964 0.65 +1.2 274,290 + EX28DRAFT_2964 0.65 -0.9 274,500 + +0.7 274,501 - -0.5 274,557 + -1.7 274,559 + -0.8 274,560 - +0.9 274,581 - -0.8 274,595 - -0.6 274,595 - -0.0 274,612 - +0.5
Or see this region's nucleotide sequence