Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1736

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1734 and EX28DRAFT_1735 are separated by 48 nucleotidesEX28DRAFT_1735 and EX28DRAFT_1736 are separated by 50 nucleotidesEX28DRAFT_1736 and EX28DRAFT_1737 are separated by 129 nucleotidesEX28DRAFT_1737 and EX28DRAFT_1738 are separated by 11 nucleotides EX28DRAFT_1734: EX28DRAFT_1734 - Predicted Na+/dicarboxylate symporter, at 1,748,377 to 1,749,768 _1734 EX28DRAFT_1735: EX28DRAFT_1735 - Cell division activator CedA, at 1,749,817 to 1,750,209 _1735 EX28DRAFT_1736: EX28DRAFT_1736 - Catalase, at 1,750,260 to 1,752,509 _1736 EX28DRAFT_1737: EX28DRAFT_1737 - Uncharacterized protein conserved in bacteria, at 1,752,639 to 1,753,388 _1737 EX28DRAFT_1738: EX28DRAFT_1738 - Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases, at 1,753,400 to 1,754,755 _1738 Position (kb) 1750 1751 1752 1753Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1749.819 kb on - strandat 1749.933 kb on - strand, within EX28DRAFT_1735at 1749.933 kb on - strand, within EX28DRAFT_1735at 1750.016 kb on + strand, within EX28DRAFT_1735at 1750.016 kb on + strand, within EX28DRAFT_1735at 1750.016 kb on + strand, within EX28DRAFT_1735at 1750.016 kb on + strand, within EX28DRAFT_1735at 1750.016 kb on + strand, within EX28DRAFT_1735at 1750.016 kb on + strand, within EX28DRAFT_1735at 1750.016 kb on + strand, within EX28DRAFT_1735at 1750.017 kb on - strand, within EX28DRAFT_1735at 1750.017 kb on - strand, within EX28DRAFT_1735at 1750.017 kb on - strand, within EX28DRAFT_1735at 1750.017 kb on - strand, within EX28DRAFT_1735at 1750.017 kb on - strand, within EX28DRAFT_1735at 1750.017 kb on - strand, within EX28DRAFT_1735at 1750.020 kb on + strand, within EX28DRAFT_1735at 1750.020 kb on + strand, within EX28DRAFT_1735at 1750.021 kb on - strand, within EX28DRAFT_1735at 1750.021 kb on - strand, within EX28DRAFT_1735at 1750.021 kb on - strand, within EX28DRAFT_1735at 1750.021 kb on - strand, within EX28DRAFT_1735at 1750.021 kb on - strand, within EX28DRAFT_1735at 1750.021 kb on - strand, within EX28DRAFT_1735at 1750.023 kb on + strand, within EX28DRAFT_1735at 1750.102 kb on - strand, within EX28DRAFT_1735at 1750.197 kb on + strandat 1750.197 kb on + strandat 1750.198 kb on - strandat 1750.215 kb on + strandat 1750.216 kb on - strandat 1750.222 kb on - strandat 1750.224 kb on + strandat 1750.394 kb on + strandat 1750.394 kb on + strandat 1750.668 kb on + strand, within EX28DRAFT_1736at 1750.754 kb on - strand, within EX28DRAFT_1736at 1750.778 kb on + strand, within EX28DRAFT_1736at 1750.830 kb on - strand, within EX28DRAFT_1736at 1750.934 kb on - strand, within EX28DRAFT_1736at 1750.971 kb on + strand, within EX28DRAFT_1736at 1750.971 kb on + strand, within EX28DRAFT_1736at 1750.972 kb on - strand, within EX28DRAFT_1736at 1750.997 kb on - strand, within EX28DRAFT_1736at 1751.288 kb on + strand, within EX28DRAFT_1736at 1751.565 kb on + strand, within EX28DRAFT_1736at 1751.570 kb on + strand, within EX28DRAFT_1736at 1751.625 kb on + strand, within EX28DRAFT_1736at 1751.648 kb on + strand, within EX28DRAFT_1736at 1751.648 kb on + strand, within EX28DRAFT_1736at 1751.757 kb on + strand, within EX28DRAFT_1736at 1751.760 kb on + strand, within EX28DRAFT_1736at 1751.859 kb on + strand, within EX28DRAFT_1736at 1752.104 kb on + strand, within EX28DRAFT_1736at 1752.262 kb on + strand, within EX28DRAFT_1736at 1752.262 kb on + strand, within EX28DRAFT_1736at 1752.263 kb on - strand, within EX28DRAFT_1736at 1752.263 kb on - strand, within EX28DRAFT_1736at 1752.295 kb on - strandat 1752.295 kb on - strandat 1752.295 kb on - strandat 1752.297 kb on + strandat 1752.298 kb on - strandat 1752.312 kb on + strandat 1752.576 kb on - strandat 1752.689 kb on - strandat 1752.869 kb on - strand, within EX28DRAFT_1737at 1753.001 kb on + strand, within EX28DRAFT_1737at 1753.001 kb on + strand, within EX28DRAFT_1737at 1753.001 kb on + strand, within EX28DRAFT_1737at 1753.001 kb on + strand, within EX28DRAFT_1737at 1753.002 kb on - strand, within EX28DRAFT_1737at 1753.322 kb on + strandat 1753.323 kb on - strandat 1753.401 kb on + strandat 1753.402 kb on - strandat 1753.402 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,749,819 - +0.2
1,749,933 - EX28DRAFT_1735 0.30 +0.2
1,749,933 - EX28DRAFT_1735 0.30 +0.6
1,750,016 + EX28DRAFT_1735 0.51 -0.9
1,750,016 + EX28DRAFT_1735 0.51 -0.1
1,750,016 + EX28DRAFT_1735 0.51 -3.4
1,750,016 + EX28DRAFT_1735 0.51 +0.4
1,750,016 + EX28DRAFT_1735 0.51 -2.1
1,750,016 + EX28DRAFT_1735 0.51 -0.4
1,750,016 + EX28DRAFT_1735 0.51 -0.2
1,750,017 - EX28DRAFT_1735 0.51 -0.6
1,750,017 - EX28DRAFT_1735 0.51 -0.4
1,750,017 - EX28DRAFT_1735 0.51 +0.4
1,750,017 - EX28DRAFT_1735 0.51 +1.2
1,750,017 - EX28DRAFT_1735 0.51 +1.3
1,750,017 - EX28DRAFT_1735 0.51 +0.5
1,750,020 + EX28DRAFT_1735 0.52 +0.1
1,750,020 + EX28DRAFT_1735 0.52 -1.1
1,750,021 - EX28DRAFT_1735 0.52 -0.2
1,750,021 - EX28DRAFT_1735 0.52 -0.5
1,750,021 - EX28DRAFT_1735 0.52 -1.0
1,750,021 - EX28DRAFT_1735 0.52 -0.5
1,750,021 - EX28DRAFT_1735 0.52 +0.1
1,750,021 - EX28DRAFT_1735 0.52 -1.9
1,750,023 + EX28DRAFT_1735 0.52 +0.4
1,750,102 - EX28DRAFT_1735 0.73 +0.4
1,750,197 + +0.9
1,750,197 + +0.1
1,750,198 - +0.8
1,750,215 + +1.0
1,750,216 - -0.4
1,750,222 - -0.1
1,750,224 + +0.2
1,750,394 + -0.5
1,750,394 + +0.2
1,750,668 + EX28DRAFT_1736 0.18 +1.1
1,750,754 - EX28DRAFT_1736 0.22 -0.6
1,750,778 + EX28DRAFT_1736 0.23 +1.0
1,750,830 - EX28DRAFT_1736 0.25 +0.4
1,750,934 - EX28DRAFT_1736 0.30 -0.1
1,750,971 + EX28DRAFT_1736 0.32 +0.9
1,750,971 + EX28DRAFT_1736 0.32 +0.5
1,750,972 - EX28DRAFT_1736 0.32 +0.3
1,750,997 - EX28DRAFT_1736 0.33 +0.1
1,751,288 + EX28DRAFT_1736 0.46 -1.7
1,751,565 + EX28DRAFT_1736 0.58 -0.6
1,751,570 + EX28DRAFT_1736 0.58 +0.4
1,751,625 + EX28DRAFT_1736 0.61 -0.2
1,751,648 + EX28DRAFT_1736 0.62 +0.6
1,751,648 + EX28DRAFT_1736 0.62 +1.3
1,751,757 + EX28DRAFT_1736 0.67 -0.3
1,751,760 + EX28DRAFT_1736 0.67 +0.5
1,751,859 + EX28DRAFT_1736 0.71 +0.1
1,752,104 + EX28DRAFT_1736 0.82 +0.3
1,752,262 + EX28DRAFT_1736 0.89 +2.1
1,752,262 + EX28DRAFT_1736 0.89 -0.0
1,752,263 - EX28DRAFT_1736 0.89 +1.1
1,752,263 - EX28DRAFT_1736 0.89 +0.3
1,752,295 - +1.6
1,752,295 - +0.4
1,752,295 - -2.0
1,752,297 + +0.7
1,752,298 - +0.6
1,752,312 + +1.2
1,752,576 - -1.1
1,752,689 - +0.2
1,752,869 - EX28DRAFT_1737 0.31 +0.2
1,753,001 + EX28DRAFT_1737 0.48 +0.3
1,753,001 + EX28DRAFT_1737 0.48 +0.3
1,753,001 + EX28DRAFT_1737 0.48 +0.3
1,753,001 + EX28DRAFT_1737 0.48 -1.4
1,753,002 - EX28DRAFT_1737 0.48 -2.4
1,753,322 + -0.9
1,753,323 - +0.4
1,753,401 + -0.5
1,753,402 - -0.7
1,753,402 - -0.0

Or see this region's nucleotide sequence