Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1355

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1354 and EX28DRAFT_1355 overlap by 4 nucleotidesEX28DRAFT_1355 and EX28DRAFT_1356 are separated by 75 nucleotidesEX28DRAFT_1356 and EX28DRAFT_1357 are separated by 70 nucleotides EX28DRAFT_1354: EX28DRAFT_1354 - Multidrug resistance efflux pump, at 1,369,541 to 1,370,623 _1354 EX28DRAFT_1355: EX28DRAFT_1355 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 1,370,620 to 1,371,999 _1355 EX28DRAFT_1356: EX28DRAFT_1356 - Predicted O-methyltransferase, at 1,372,075 to 1,372,734 _1356 EX28DRAFT_1357: EX28DRAFT_1357 - RNA helicase HrpA, at 1,372,805 to 1,376,707 _1357 Position (kb) 1370 1371 1372Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1369.627 kb on + strandat 1369.752 kb on - strand, within EX28DRAFT_1354at 1369.752 kb on - strand, within EX28DRAFT_1354at 1369.752 kb on - strand, within EX28DRAFT_1354at 1369.754 kb on - strand, within EX28DRAFT_1354at 1369.782 kb on + strand, within EX28DRAFT_1354at 1369.783 kb on - strand, within EX28DRAFT_1354at 1369.825 kb on + strand, within EX28DRAFT_1354at 1369.826 kb on - strand, within EX28DRAFT_1354at 1369.829 kb on + strand, within EX28DRAFT_1354at 1369.829 kb on + strand, within EX28DRAFT_1354at 1369.829 kb on + strand, within EX28DRAFT_1354at 1369.906 kb on + strand, within EX28DRAFT_1354at 1369.989 kb on + strand, within EX28DRAFT_1354at 1370.133 kb on + strand, within EX28DRAFT_1354at 1370.133 kb on + strand, within EX28DRAFT_1354at 1370.133 kb on + strand, within EX28DRAFT_1354at 1370.417 kb on + strand, within EX28DRAFT_1354at 1370.688 kb on - strandat 1370.688 kb on - strandat 1370.867 kb on - strand, within EX28DRAFT_1355at 1370.867 kb on - strand, within EX28DRAFT_1355at 1371.011 kb on - strand, within EX28DRAFT_1355at 1371.208 kb on - strand, within EX28DRAFT_1355at 1371.257 kb on + strand, within EX28DRAFT_1355at 1371.258 kb on - strand, within EX28DRAFT_1355at 1371.624 kb on + strand, within EX28DRAFT_1355at 1371.672 kb on + strand, within EX28DRAFT_1355at 1371.672 kb on + strand, within EX28DRAFT_1355at 1371.704 kb on - strand, within EX28DRAFT_1355at 1371.709 kb on + strand, within EX28DRAFT_1355at 1371.765 kb on + strand, within EX28DRAFT_1355at 1371.869 kb on - strandat 1371.964 kb on + strandat 1371.965 kb on - strandat 1371.965 kb on - strandat 1371.965 kb on - strandat 1372.101 kb on + strandat 1372.101 kb on + strandat 1372.101 kb on + strandat 1372.102 kb on - strandat 1372.105 kb on + strandat 1372.105 kb on + strandat 1372.106 kb on - strandat 1372.267 kb on - strand, within EX28DRAFT_1356at 1372.281 kb on + strand, within EX28DRAFT_1356at 1372.282 kb on - strand, within EX28DRAFT_1356at 1372.838 kb on - strandat 1372.963 kb on + strandat 1372.963 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,369,627 + -2.2
1,369,752 - EX28DRAFT_1354 0.19 -0.2
1,369,752 - EX28DRAFT_1354 0.19 +1.8
1,369,752 - EX28DRAFT_1354 0.19 +0.1
1,369,754 - EX28DRAFT_1354 0.20 +0.0
1,369,782 + EX28DRAFT_1354 0.22 -0.5
1,369,783 - EX28DRAFT_1354 0.22 +0.5
1,369,825 + EX28DRAFT_1354 0.26 +0.4
1,369,826 - EX28DRAFT_1354 0.26 +0.1
1,369,829 + EX28DRAFT_1354 0.27 -0.4
1,369,829 + EX28DRAFT_1354 0.27 +0.2
1,369,829 + EX28DRAFT_1354 0.27 +0.8
1,369,906 + EX28DRAFT_1354 0.34 +0.1
1,369,989 + EX28DRAFT_1354 0.41 +0.0
1,370,133 + EX28DRAFT_1354 0.55 +1.4
1,370,133 + EX28DRAFT_1354 0.55 +0.4
1,370,133 + EX28DRAFT_1354 0.55 +0.9
1,370,417 + EX28DRAFT_1354 0.81 +0.2
1,370,688 - +0.4
1,370,688 - -0.4
1,370,867 - EX28DRAFT_1355 0.18 +0.7
1,370,867 - EX28DRAFT_1355 0.18 -0.7
1,371,011 - EX28DRAFT_1355 0.28 -0.4
1,371,208 - EX28DRAFT_1355 0.43 -1.1
1,371,257 + EX28DRAFT_1355 0.46 -1.0
1,371,258 - EX28DRAFT_1355 0.46 -0.6
1,371,624 + EX28DRAFT_1355 0.73 +0.0
1,371,672 + EX28DRAFT_1355 0.76 -0.9
1,371,672 + EX28DRAFT_1355 0.76 +0.1
1,371,704 - EX28DRAFT_1355 0.79 -3.3
1,371,709 + EX28DRAFT_1355 0.79 -1.2
1,371,765 + EX28DRAFT_1355 0.83 -0.6
1,371,869 - +0.4
1,371,964 + +0.0
1,371,965 - -1.1
1,371,965 - +1.4
1,371,965 - -1.2
1,372,101 + -0.4
1,372,101 + -1.7
1,372,101 + +0.3
1,372,102 - +0.1
1,372,105 + -0.3
1,372,105 + +0.2
1,372,106 - +1.8
1,372,267 - EX28DRAFT_1356 0.29 +0.8
1,372,281 + EX28DRAFT_1356 0.31 +2.7
1,372,282 - EX28DRAFT_1356 0.31 -0.2
1,372,838 - -1.1
1,372,963 + +1.9
1,372,963 + -0.9

Or see this region's nucleotide sequence