Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0969 and EX28DRAFT_0970 are separated by 162 nucleotides EX28DRAFT_0970 and EX28DRAFT_0971 are separated by 1 nucleotides EX28DRAFT_0971 and EX28DRAFT_0972 overlap by 1 nucleotides EX28DRAFT_0972 and EX28DRAFT_0973 overlap by 14 nucleotides
EX28DRAFT_0969: EX28DRAFT_0969 - TupA-like ATPgrasp, at 970,993 to 971,934
_0969
EX28DRAFT_0970: EX28DRAFT_0970 - ABC-type antimicrobial peptide transport system, ATPase component, at 972,097 to 972,903
_0970
EX28DRAFT_0971: EX28DRAFT_0971 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 972,905 to 973,897
_0971
EX28DRAFT_0972: EX28DRAFT_0972 - ABC-type antimicrobial peptide transport system, permease component, at 973,897 to 974,787
_0972
EX28DRAFT_0973: EX28DRAFT_0973 - ABC-type antimicrobial peptide transport system, permease component, at 974,774 to 975,739
_0973
Position (kb) 972
973
974 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 972.025 kb on - strand at 972.288 kb on - strand, within EX28DRAFT_0970 at 972.498 kb on + strand, within EX28DRAFT_0970 at 972.798 kb on + strand, within EX28DRAFT_0970 at 974.380 kb on - strand, within EX28DRAFT_0972 at 974.690 kb on - strand, within EX28DRAFT_0972 at 974.690 kb on - strand, within EX28DRAFT_0972 at 974.718 kb on - strand at 974.771 kb on - strand at 974.781 kb on - strand at 974.798 kb on - strand at 974.845 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 972,025 - -2.6 972,288 - EX28DRAFT_0970 0.24 -1.0 972,498 + EX28DRAFT_0970 0.50 -1.6 972,798 + EX28DRAFT_0970 0.87 -0.6 974,380 - EX28DRAFT_0972 0.54 -2.4 974,690 - EX28DRAFT_0972 0.89 -1.0 974,690 - EX28DRAFT_0972 0.89 -2.3 974,718 - -0.6 974,771 - +3.0 974,781 - +1.0 974,798 - +0.2 974,845 + -1.8
Or see this region's nucleotide sequence