Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0719 and EX28DRAFT_0720 are separated by 34 nucleotides EX28DRAFT_0720 and EX28DRAFT_0721 are separated by 106 nucleotides EX28DRAFT_0721 and EX28DRAFT_0722 are separated by 77 nucleotides
EX28DRAFT_0719: EX28DRAFT_0719 - Calcineurin-like phosphoesterase, at 716,310 to 716,954
_0719
EX28DRAFT_0720: EX28DRAFT_0720 - Protein of unknown function (DUF1480), at 716,989 to 717,228
_0720
EX28DRAFT_0721: EX28DRAFT_0721 - NOL1/NOP2/sun family putative RNA methylase, at 717,335 to 718,777
_0721
EX28DRAFT_0722: EX28DRAFT_0722 - Paraquat-inducible protein B, at 718,855 to 721,488
_0722
Position (kb) 717
718
719 Strain fitness (log2 ratio) -2
-1
0
1
2 at 716.365 kb on + strand at 716.414 kb on + strand, within EX28DRAFT_0719 at 716.431 kb on + strand, within EX28DRAFT_0719 at 716.432 kb on - strand, within EX28DRAFT_0719 at 716.477 kb on + strand, within EX28DRAFT_0719 at 716.491 kb on + strand, within EX28DRAFT_0719 at 716.672 kb on + strand, within EX28DRAFT_0719 at 716.804 kb on - strand, within EX28DRAFT_0719 at 716.858 kb on + strand, within EX28DRAFT_0719 at 716.858 kb on + strand, within EX28DRAFT_0719 at 716.886 kb on - strand, within EX28DRAFT_0719 at 716.886 kb on - strand, within EX28DRAFT_0719 at 716.898 kb on + strand at 716.899 kb on - strand at 716.906 kb on + strand at 716.928 kb on + strand at 716.928 kb on + strand at 716.953 kb on - strand at 716.955 kb on + strand at 716.955 kb on + strand at 716.985 kb on + strand at 716.985 kb on + strand at 717.022 kb on - strand, within EX28DRAFT_0720 at 717.029 kb on + strand, within EX28DRAFT_0720 at 717.029 kb on + strand, within EX28DRAFT_0720 at 717.029 kb on + strand, within EX28DRAFT_0720 at 717.067 kb on + strand, within EX28DRAFT_0720 at 717.208 kb on - strand at 717.686 kb on + strand, within EX28DRAFT_0721 at 717.695 kb on - strand, within EX28DRAFT_0721 at 717.781 kb on + strand, within EX28DRAFT_0721 at 718.274 kb on - strand, within EX28DRAFT_0721 at 718.483 kb on + strand, within EX28DRAFT_0721 at 718.486 kb on - strand, within EX28DRAFT_0721 at 718.585 kb on + strand, within EX28DRAFT_0721 at 718.586 kb on - strand, within EX28DRAFT_0721 at 718.700 kb on + strand at 718.814 kb on - strand at 718.819 kb on - strand at 718.857 kb on - strand at 719.077 kb on - strand at 719.077 kb on - strand at 719.336 kb on + strand, within EX28DRAFT_0722 at 719.435 kb on + strand, within EX28DRAFT_0722 at 719.436 kb on - strand, within EX28DRAFT_0722 at 719.436 kb on - strand, within EX28DRAFT_0722 at 719.539 kb on - strand, within EX28DRAFT_0722 at 719.577 kb on + strand, within EX28DRAFT_0722 at 719.578 kb on - strand, within EX28DRAFT_0722 at 719.625 kb on + strand, within EX28DRAFT_0722 at 719.625 kb on + strand, within EX28DRAFT_0722
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 716,365 + +0.3 716,414 + EX28DRAFT_0719 0.16 -0.7 716,431 + EX28DRAFT_0719 0.19 +2.6 716,432 - EX28DRAFT_0719 0.19 +0.5 716,477 + EX28DRAFT_0719 0.26 -0.0 716,491 + EX28DRAFT_0719 0.28 -0.3 716,672 + EX28DRAFT_0719 0.56 -1.0 716,804 - EX28DRAFT_0719 0.77 +1.1 716,858 + EX28DRAFT_0719 0.85 +0.5 716,858 + EX28DRAFT_0719 0.85 -0.5 716,886 - EX28DRAFT_0719 0.89 -2.5 716,886 - EX28DRAFT_0719 0.89 -0.8 716,898 + -0.2 716,899 - -2.7 716,906 + -1.7 716,928 + -1.9 716,928 + +0.5 716,953 - -0.8 716,955 + +0.1 716,955 + -0.0 716,985 + +0.7 716,985 + +0.5 717,022 - EX28DRAFT_0720 0.14 -0.6 717,029 + EX28DRAFT_0720 0.17 -1.2 717,029 + EX28DRAFT_0720 0.17 -0.9 717,029 + EX28DRAFT_0720 0.17 -2.2 717,067 + EX28DRAFT_0720 0.33 +0.2 717,208 - -0.0 717,686 + EX28DRAFT_0721 0.24 -0.8 717,695 - EX28DRAFT_0721 0.25 -1.2 717,781 + EX28DRAFT_0721 0.31 -1.0 718,274 - EX28DRAFT_0721 0.65 -0.8 718,483 + EX28DRAFT_0721 0.80 +0.4 718,486 - EX28DRAFT_0721 0.80 -0.5 718,585 + EX28DRAFT_0721 0.87 -1.4 718,586 - EX28DRAFT_0721 0.87 -1.4 718,700 + -0.9 718,814 - +0.0 718,819 - +0.2 718,857 - +0.2 719,077 - +0.4 719,077 - -0.4 719,336 + EX28DRAFT_0722 0.18 +0.3 719,435 + EX28DRAFT_0722 0.22 +0.6 719,436 - EX28DRAFT_0722 0.22 +1.0 719,436 - EX28DRAFT_0722 0.22 +1.4 719,539 - EX28DRAFT_0722 0.26 -1.8 719,577 + EX28DRAFT_0722 0.27 -2.2 719,578 - EX28DRAFT_0722 0.27 +0.0 719,625 + EX28DRAFT_0722 0.29 -2.2 719,625 + EX28DRAFT_0722 0.29 +0.6
Or see this region's nucleotide sequence