Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0613 and EX28DRAFT_0614 overlap by 1 nucleotides EX28DRAFT_0614 and EX28DRAFT_0615 overlap by 8 nucleotides EX28DRAFT_0615 and EX28DRAFT_0616 overlap by 8 nucleotides
EX28DRAFT_0613: EX28DRAFT_0613 - flagellar protein export ATPase FliI, at 610,695 to 612,065
_0613
EX28DRAFT_0614: EX28DRAFT_0614 - Flagellar biosynthesis/type III secretory pathway protein, at 612,065 to 612,772
_0614
EX28DRAFT_0615: EX28DRAFT_0615 - flagellar motor switch protein FliG, at 612,765 to 613,763
_0615
EX28DRAFT_0616: EX28DRAFT_0616 - flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF), at 613,756 to 615,432
_0616
Position (kb) 612
613
614 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 611.771 kb on + strand, within EX28DRAFT_0613 at 612.004 kb on - strand at 612.170 kb on + strand, within EX28DRAFT_0614 at 612.171 kb on - strand, within EX28DRAFT_0614 at 612.584 kb on - strand, within EX28DRAFT_0614 at 612.585 kb on + strand, within EX28DRAFT_0614 at 612.585 kb on + strand, within EX28DRAFT_0614 at 612.586 kb on - strand, within EX28DRAFT_0614 at 612.766 kb on + strand at 612.767 kb on - strand at 612.772 kb on + strand at 612.772 kb on + strand at 612.772 kb on + strand at 612.772 kb on + strand at 612.772 kb on + strand at 612.772 kb on + strand at 612.772 kb on + strand at 612.772 kb on + strand at 612.772 kb on + strand at 612.772 kb on + strand at 612.772 kb on + strand at 612.772 kb on + strand at 612.772 kb on + strand at 612.772 kb on + strand at 612.772 kb on + strand at 612.772 kb on + strand at 612.772 kb on + strand at 612.772 kb on + strand at 612.772 kb on + strand at 612.773 kb on - strand at 612.773 kb on - strand at 612.773 kb on - strand at 612.773 kb on - strand at 612.773 kb on - strand at 612.773 kb on - strand at 612.773 kb on - strand at 612.773 kb on - strand at 612.773 kb on - strand at 612.773 kb on - strand at 612.773 kb on - strand at 612.773 kb on - strand at 612.773 kb on - strand at 612.773 kb on - strand at 612.773 kb on - strand at 612.773 kb on - strand at 612.773 kb on - strand at 612.773 kb on - strand at 613.424 kb on + strand, within EX28DRAFT_0615 at 613.534 kb on + strand, within EX28DRAFT_0615 at 613.754 kb on + strand at 613.754 kb on + strand at 613.755 kb on - strand at 613.755 kb on - strand at 613.755 kb on - strand at 613.757 kb on + strand at 613.757 kb on + strand at 613.757 kb on + strand at 613.758 kb on - strand at 613.758 kb on - strand at 613.815 kb on + strand at 614.261 kb on + strand, within EX28DRAFT_0616 at 614.261 kb on + strand, within EX28DRAFT_0616 at 614.261 kb on + strand, within EX28DRAFT_0616 at 614.261 kb on + strand, within EX28DRAFT_0616 at 614.262 kb on - strand, within EX28DRAFT_0616 at 614.313 kb on + strand, within EX28DRAFT_0616 at 614.313 kb on + strand, within EX28DRAFT_0616 at 614.313 kb on + strand, within EX28DRAFT_0616 at 614.314 kb on - strand, within EX28DRAFT_0616 at 614.342 kb on + strand, within EX28DRAFT_0616 at 614.342 kb on + strand, within EX28DRAFT_0616 at 614.343 kb on - strand, within EX28DRAFT_0616 at 614.343 kb on - strand, within EX28DRAFT_0616 at 614.358 kb on + strand, within EX28DRAFT_0616 at 614.481 kb on + strand, within EX28DRAFT_0616 at 614.589 kb on - strand, within EX28DRAFT_0616 at 614.610 kb on + strand, within EX28DRAFT_0616 at 614.723 kb on + strand, within EX28DRAFT_0616 at 614.724 kb on - strand, within EX28DRAFT_0616 at 614.724 kb on - strand, within EX28DRAFT_0616
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 611,771 + EX28DRAFT_0613 0.78 -0.3 612,004 - +0.7 612,170 + EX28DRAFT_0614 0.15 +0.4 612,171 - EX28DRAFT_0614 0.15 +0.6 612,584 - EX28DRAFT_0614 0.73 +0.9 612,585 + EX28DRAFT_0614 0.73 +0.2 612,585 + EX28DRAFT_0614 0.73 +0.2 612,586 - EX28DRAFT_0614 0.74 -0.6 612,766 + +0.1 612,767 - +0.5 612,772 + -0.4 612,772 + -0.0 612,772 + +1.4 612,772 + +0.5 612,772 + +0.1 612,772 + +0.6 612,772 + +0.7 612,772 + +0.9 612,772 + +0.4 612,772 + -0.3 612,772 + +0.0 612,772 + +0.0 612,772 + -0.8 612,772 + -1.2 612,772 + +0.3 612,772 + -0.1 612,772 + -0.3 612,772 + -0.8 612,772 + +0.8 612,773 - +0.9 612,773 - +0.1 612,773 - -0.2 612,773 - -0.3 612,773 - +0.7 612,773 - -0.7 612,773 - +0.4 612,773 - +0.6 612,773 - +0.5 612,773 - +0.1 612,773 - +0.2 612,773 - +0.2 612,773 - +0.5 612,773 - -0.5 612,773 - +0.5 612,773 - +0.8 612,773 - +0.7 612,773 - -0.3 613,424 + EX28DRAFT_0615 0.66 -0.5 613,534 + EX28DRAFT_0615 0.77 -3.6 613,754 + -0.7 613,754 + +0.1 613,755 - +0.4 613,755 - +0.3 613,755 - -0.1 613,757 + -0.6 613,757 + +0.4 613,757 + -0.3 613,758 - +0.6 613,758 - +4.3 613,815 + +0.2 614,261 + EX28DRAFT_0616 0.30 -2.1 614,261 + EX28DRAFT_0616 0.30 -0.2 614,261 + EX28DRAFT_0616 0.30 +0.8 614,261 + EX28DRAFT_0616 0.30 +0.6 614,262 - EX28DRAFT_0616 0.30 +0.5 614,313 + EX28DRAFT_0616 0.33 -0.5 614,313 + EX28DRAFT_0616 0.33 +0.3 614,313 + EX28DRAFT_0616 0.33 -0.3 614,314 - EX28DRAFT_0616 0.33 +0.3 614,342 + EX28DRAFT_0616 0.35 +2.8 614,342 + EX28DRAFT_0616 0.35 +0.6 614,343 - EX28DRAFT_0616 0.35 -1.6 614,343 - EX28DRAFT_0616 0.35 -1.2 614,358 + EX28DRAFT_0616 0.36 -0.3 614,481 + EX28DRAFT_0616 0.43 -0.2 614,589 - EX28DRAFT_0616 0.50 -0.3 614,610 + EX28DRAFT_0616 0.51 -0.9 614,723 + EX28DRAFT_0616 0.58 -0.6 614,724 - EX28DRAFT_0616 0.58 +0.3 614,724 - EX28DRAFT_0616 0.58 +1.6
Or see this region's nucleotide sequence