Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0415 and EX28DRAFT_0416 are separated by 59 nucleotides EX28DRAFT_0416 and EX28DRAFT_0417 are separated by 41 nucleotides EX28DRAFT_0417 and EX28DRAFT_0418 are separated by 301 nucleotides
EX28DRAFT_0415: EX28DRAFT_0415 - GMP synthase - Glutamine amidotransferase domain, at 392,700 to 393,416
_0415
EX28DRAFT_0416: EX28DRAFT_0416 - AraC-type DNA-binding domain-containing proteins, at 393,476 to 394,273
_0416
EX28DRAFT_0417: EX28DRAFT_0417 - tRNA-dihydrouridine synthase, at 394,315 to 395,247
_0417
EX28DRAFT_0418: EX28DRAFT_0418 - Carbohydrate-selective porin, at 395,549 to 396,895
_0418
Position (kb) 394
395
396 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 393.328 kb on + strand, within EX28DRAFT_0415 at 393.335 kb on + strand, within EX28DRAFT_0415 at 393.336 kb on - strand, within EX28DRAFT_0415 at 393.338 kb on + strand, within EX28DRAFT_0415 at 393.434 kb on - strand at 393.439 kb on + strand at 393.440 kb on - strand at 393.453 kb on + strand at 393.453 kb on + strand at 393.454 kb on - strand at 393.454 kb on - strand at 393.541 kb on + strand at 393.541 kb on + strand at 393.541 kb on + strand at 393.542 kb on - strand at 393.542 kb on - strand at 393.542 kb on - strand at 393.542 kb on - strand at 393.542 kb on - strand at 393.542 kb on - strand at 393.545 kb on + strand at 393.547 kb on + strand at 393.652 kb on - strand, within EX28DRAFT_0416 at 393.652 kb on - strand, within EX28DRAFT_0416 at 393.699 kb on - strand, within EX28DRAFT_0416 at 393.931 kb on - strand, within EX28DRAFT_0416 at 393.954 kb on + strand, within EX28DRAFT_0416 at 394.078 kb on + strand, within EX28DRAFT_0416 at 394.271 kb on + strand at 394.285 kb on + strand at 394.285 kb on + strand at 394.285 kb on + strand at 394.308 kb on + strand at 394.315 kb on - strand at 394.390 kb on + strand at 394.472 kb on + strand, within EX28DRAFT_0417 at 394.473 kb on - strand, within EX28DRAFT_0417 at 394.840 kb on + strand, within EX28DRAFT_0417 at 394.858 kb on - strand, within EX28DRAFT_0417 at 395.024 kb on + strand, within EX28DRAFT_0417 at 395.029 kb on + strand, within EX28DRAFT_0417 at 395.029 kb on + strand, within EX28DRAFT_0417 at 395.116 kb on + strand, within EX28DRAFT_0417 at 395.117 kb on - strand, within EX28DRAFT_0417 at 395.555 kb on + strand at 395.682 kb on + strand at 395.686 kb on + strand, within EX28DRAFT_0418 at 395.711 kb on - strand, within EX28DRAFT_0418 at 395.714 kb on + strand, within EX28DRAFT_0418 at 395.714 kb on + strand, within EX28DRAFT_0418 at 395.714 kb on + strand, within EX28DRAFT_0418 at 395.765 kb on - strand, within EX28DRAFT_0418
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 393,328 + EX28DRAFT_0415 0.88 -0.2 393,335 + EX28DRAFT_0415 0.89 +0.2 393,336 - EX28DRAFT_0415 0.89 -0.2 393,338 + EX28DRAFT_0415 0.89 -0.9 393,434 - +0.3 393,439 + -0.0 393,440 - -1.5 393,453 + +0.4 393,453 + +0.2 393,454 - -0.1 393,454 - -0.1 393,541 + -0.0 393,541 + -0.6 393,541 + +0.6 393,542 - +0.5 393,542 - +0.6 393,542 - +0.9 393,542 - -1.1 393,542 - +0.1 393,542 - +0.4 393,545 + -0.2 393,547 + +0.1 393,652 - EX28DRAFT_0416 0.22 +1.2 393,652 - EX28DRAFT_0416 0.22 +0.1 393,699 - EX28DRAFT_0416 0.28 +0.3 393,931 - EX28DRAFT_0416 0.57 +0.4 393,954 + EX28DRAFT_0416 0.60 +0.7 394,078 + EX28DRAFT_0416 0.75 -0.6 394,271 + -0.4 394,285 + +1.4 394,285 + -0.0 394,285 + -0.1 394,308 + +0.6 394,315 - +1.0 394,390 + -0.5 394,472 + EX28DRAFT_0417 0.17 +0.3 394,473 - EX28DRAFT_0417 0.17 -0.5 394,840 + EX28DRAFT_0417 0.56 -0.0 394,858 - EX28DRAFT_0417 0.58 +3.6 395,024 + EX28DRAFT_0417 0.76 -2.9 395,029 + EX28DRAFT_0417 0.77 -1.1 395,029 + EX28DRAFT_0417 0.77 -0.2 395,116 + EX28DRAFT_0417 0.86 -1.0 395,117 - EX28DRAFT_0417 0.86 +0.2 395,555 + -1.8 395,682 + +0.1 395,686 + EX28DRAFT_0418 0.10 +0.8 395,711 - EX28DRAFT_0418 0.12 +0.4 395,714 + EX28DRAFT_0418 0.12 +0.2 395,714 + EX28DRAFT_0418 0.12 -0.3 395,714 + EX28DRAFT_0418 0.12 +2.2 395,765 - EX28DRAFT_0418 0.16 -0.4
Or see this region's nucleotide sequence