Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0319

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0317 and EX28DRAFT_0318 are separated by 81 nucleotidesEX28DRAFT_0318 and EX28DRAFT_0319 are separated by 94 nucleotidesEX28DRAFT_0319 and EX28DRAFT_0320 are separated by 937 nucleotides EX28DRAFT_0317: EX28DRAFT_0317 - Di- and tricarboxylate transporters, at 276,288 to 278,120 _0317 EX28DRAFT_0318: EX28DRAFT_0318 - Predicted hydrolases of HD superfamily, at 278,202 to 278,801 _0318 EX28DRAFT_0319: EX28DRAFT_0319 - Aspartate/tyrosine/aromatic aminotransferase, at 278,896 to 280,110 _0319 EX28DRAFT_0320: EX28DRAFT_0320 - Transcriptional regulator, at 281,048 to 281,986 _0320 Position (kb) 278 279 280 281Strain fitness (log2 ratio) -2 -1 0 1 2 3at 278.203 kb on + strandat 278.239 kb on - strandat 278.268 kb on - strand, within EX28DRAFT_0318at 278.273 kb on - strand, within EX28DRAFT_0318at 278.522 kb on + strand, within EX28DRAFT_0318at 278.522 kb on + strand, within EX28DRAFT_0318at 278.523 kb on - strand, within EX28DRAFT_0318at 278.523 kb on - strand, within EX28DRAFT_0318at 278.524 kb on + strand, within EX28DRAFT_0318at 278.603 kb on - strand, within EX28DRAFT_0318at 278.802 kb on - strandat 278.802 kb on - strandat 278.806 kb on + strandat 278.891 kb on + strandat 278.891 kb on + strandat 279.078 kb on + strand, within EX28DRAFT_0319at 279.111 kb on + strand, within EX28DRAFT_0319at 279.112 kb on - strand, within EX28DRAFT_0319at 279.112 kb on - strand, within EX28DRAFT_0319at 279.112 kb on - strand, within EX28DRAFT_0319at 279.112 kb on - strand, within EX28DRAFT_0319at 279.112 kb on - strand, within EX28DRAFT_0319at 279.112 kb on - strand, within EX28DRAFT_0319at 279.112 kb on - strand, within EX28DRAFT_0319at 279.112 kb on - strand, within EX28DRAFT_0319at 279.113 kb on + strand, within EX28DRAFT_0319at 279.113 kb on + strand, within EX28DRAFT_0319at 279.114 kb on - strand, within EX28DRAFT_0319at 279.191 kb on + strand, within EX28DRAFT_0319at 279.192 kb on - strand, within EX28DRAFT_0319at 279.283 kb on + strand, within EX28DRAFT_0319at 279.319 kb on - strand, within EX28DRAFT_0319at 279.320 kb on + strand, within EX28DRAFT_0319at 279.352 kb on + strand, within EX28DRAFT_0319at 279.505 kb on + strand, within EX28DRAFT_0319at 279.506 kb on - strand, within EX28DRAFT_0319at 279.506 kb on - strand, within EX28DRAFT_0319at 279.506 kb on - strand, within EX28DRAFT_0319at 279.506 kb on - strand, within EX28DRAFT_0319at 279.506 kb on - strand, within EX28DRAFT_0319at 279.815 kb on + strand, within EX28DRAFT_0319at 279.816 kb on - strand, within EX28DRAFT_0319at 279.816 kb on - strand, within EX28DRAFT_0319at 279.816 kb on - strand, within EX28DRAFT_0319at 279.816 kb on - strand, within EX28DRAFT_0319at 279.819 kb on + strand, within EX28DRAFT_0319at 279.908 kb on + strand, within EX28DRAFT_0319at 280.012 kb on - strandat 280.068 kb on - strandat 280.081 kb on + strandat 280.133 kb on + strandat 280.169 kb on - strandat 280.444 kb on - strandat 280.479 kb on + strandat 280.524 kb on - strandat 280.534 kb on + strandat 280.549 kb on + strandat 280.604 kb on + strandat 280.612 kb on + strandat 280.612 kb on + strandat 280.613 kb on - strandat 280.620 kb on - strandat 280.622 kb on - strandat 280.622 kb on - strandat 280.767 kb on + strandat 280.807 kb on + strandat 280.815 kb on + strandat 280.846 kb on - strandat 280.908 kb on + strandat 280.908 kb on + strandat 280.908 kb on + strandat 280.910 kb on + strandat 280.910 kb on + strandat 280.923 kb on + strandat 280.923 kb on + strandat 280.923 kb on + strandat 280.924 kb on - strandat 280.927 kb on + strandat 280.928 kb on - strandat 280.986 kb on + strandat 280.987 kb on - strandat 281.043 kb on + strandat 281.043 kb on + strandat 281.044 kb on - strandat 281.047 kb on + strandat 281.048 kb on - strandat 281.048 kb on - strandat 281.048 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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278,203 + +0.4
278,239 - +1.3
278,268 - EX28DRAFT_0318 0.11 -0.5
278,273 - EX28DRAFT_0318 0.12 +0.3
278,522 + EX28DRAFT_0318 0.53 -0.2
278,522 + EX28DRAFT_0318 0.53 -0.7
278,523 - EX28DRAFT_0318 0.54 -0.3
278,523 - EX28DRAFT_0318 0.54 +0.2
278,524 + EX28DRAFT_0318 0.54 -0.9
278,603 - EX28DRAFT_0318 0.67 -0.3
278,802 - -0.3
278,802 - -2.2
278,806 + -0.0
278,891 + -0.4
278,891 + +0.4
279,078 + EX28DRAFT_0319 0.15 -1.0
279,111 + EX28DRAFT_0319 0.18 -0.4
279,112 - EX28DRAFT_0319 0.18 -0.2
279,112 - EX28DRAFT_0319 0.18 +1.3
279,112 - EX28DRAFT_0319 0.18 +0.7
279,112 - EX28DRAFT_0319 0.18 +0.2
279,112 - EX28DRAFT_0319 0.18 +0.5
279,112 - EX28DRAFT_0319 0.18 +1.2
279,112 - EX28DRAFT_0319 0.18 +0.5
279,112 - EX28DRAFT_0319 0.18 -0.5
279,113 + EX28DRAFT_0319 0.18 +0.2
279,113 + EX28DRAFT_0319 0.18 -0.5
279,114 - EX28DRAFT_0319 0.18 -1.1
279,191 + EX28DRAFT_0319 0.24 -1.1
279,192 - EX28DRAFT_0319 0.24 -0.1
279,283 + EX28DRAFT_0319 0.32 +0.1
279,319 - EX28DRAFT_0319 0.35 -0.2
279,320 + EX28DRAFT_0319 0.35 -0.3
279,352 + EX28DRAFT_0319 0.38 +0.7
279,505 + EX28DRAFT_0319 0.50 -0.7
279,506 - EX28DRAFT_0319 0.50 -1.4
279,506 - EX28DRAFT_0319 0.50 -1.0
279,506 - EX28DRAFT_0319 0.50 +0.2
279,506 - EX28DRAFT_0319 0.50 -0.3
279,506 - EX28DRAFT_0319 0.50 +0.5
279,815 + EX28DRAFT_0319 0.76 -1.0
279,816 - EX28DRAFT_0319 0.76 -0.1
279,816 - EX28DRAFT_0319 0.76 -0.2
279,816 - EX28DRAFT_0319 0.76 -0.3
279,816 - EX28DRAFT_0319 0.76 +0.6
279,819 + EX28DRAFT_0319 0.76 -0.7
279,908 + EX28DRAFT_0319 0.83 -0.7
280,012 - -1.6
280,068 - +2.0
280,081 + +0.1
280,133 + -0.4
280,169 - +0.7
280,444 - +1.2
280,479 + -1.4
280,524 - -0.5
280,534 + +0.7
280,549 + +0.4
280,604 + +0.5
280,612 + +1.2
280,612 + +0.5
280,613 - +1.0
280,620 - +0.4
280,622 - +0.3
280,622 - +0.9
280,767 + -0.0
280,807 + +1.0
280,815 + +0.8
280,846 - +0.1
280,908 + -0.1
280,908 + +1.1
280,908 + +0.3
280,910 + +0.9
280,910 + +1.1
280,923 + +0.4
280,923 + +2.3
280,923 + +3.1
280,924 - +0.5
280,927 + +0.7
280,928 - -0.8
280,986 + +1.1
280,987 - -1.0
281,043 + -0.3
281,043 + +0.9
281,044 - +0.9
281,047 + +0.1
281,048 - -2.4
281,048 - +1.3
281,048 - -0.8

Or see this region's nucleotide sequence