Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0267 and EX28DRAFT_0268 are separated by 44 nucleotides EX28DRAFT_0268 and EX28DRAFT_0269 are separated by 372 nucleotides EX28DRAFT_0269 and EX28DRAFT_0270 are separated by 276 nucleotides
EX28DRAFT_0267: EX28DRAFT_0267 - Surface lipoprotein, at 228,242 to 228,994
_0267
EX28DRAFT_0268: EX28DRAFT_0268 - Long-chain fatty acid transport protein, at 229,039 to 230,361
_0268
EX28DRAFT_0269: EX28DRAFT_0269 - conserved hypothetical protein, at 230,734 to 231,018
_0269
EX28DRAFT_0270: EX28DRAFT_0270 - fatty oxidation complex, beta subunit FadI, at 231,295 to 232,605
_0270
Position (kb) 229
230
231 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 228.131 kb on + strand at 228.132 kb on - strand at 228.132 kb on - strand at 228.153 kb on + strand at 228.222 kb on + strand at 228.237 kb on + strand at 228.237 kb on + strand at 228.238 kb on - strand at 228.241 kb on + strand at 228.241 kb on + strand at 228.242 kb on - strand at 228.356 kb on + strand, within EX28DRAFT_0267 at 228.356 kb on + strand, within EX28DRAFT_0267 at 228.356 kb on + strand, within EX28DRAFT_0267 at 228.368 kb on + strand, within EX28DRAFT_0267 at 228.386 kb on + strand, within EX28DRAFT_0267 at 228.387 kb on - strand, within EX28DRAFT_0267 at 228.387 kb on - strand, within EX28DRAFT_0267 at 228.451 kb on - strand, within EX28DRAFT_0267 at 228.455 kb on - strand, within EX28DRAFT_0267 at 228.498 kb on - strand, within EX28DRAFT_0267 at 228.580 kb on + strand, within EX28DRAFT_0267 at 228.688 kb on - strand, within EX28DRAFT_0267 at 228.696 kb on - strand, within EX28DRAFT_0267 at 228.700 kb on + strand, within EX28DRAFT_0267 at 228.871 kb on + strand, within EX28DRAFT_0267 at 228.871 kb on + strand, within EX28DRAFT_0267 at 228.871 kb on + strand, within EX28DRAFT_0267 at 228.876 kb on + strand, within EX28DRAFT_0267 at 228.876 kb on + strand, within EX28DRAFT_0267 at 228.876 kb on + strand, within EX28DRAFT_0267 at 228.877 kb on - strand, within EX28DRAFT_0267 at 228.887 kb on + strand, within EX28DRAFT_0267 at 228.973 kb on - strand at 229.041 kb on - strand at 229.049 kb on + strand at 229.068 kb on - strand at 229.080 kb on + strand at 229.101 kb on - strand at 229.101 kb on - strand at 229.137 kb on + strand at 229.137 kb on + strand at 229.137 kb on + strand at 229.137 kb on + strand at 229.137 kb on + strand at 229.138 kb on + strand at 229.138 kb on - strand at 229.138 kb on - strand at 229.138 kb on - strand at 229.138 kb on - strand at 229.139 kb on + strand at 229.139 kb on + strand at 229.139 kb on + strand at 229.139 kb on + strand at 229.140 kb on - strand at 229.140 kb on - strand at 229.140 kb on - strand at 229.140 kb on - strand at 229.158 kb on + strand at 229.159 kb on - strand at 229.159 kb on - strand at 229.181 kb on + strand, within EX28DRAFT_0268 at 229.230 kb on + strand, within EX28DRAFT_0268 at 229.303 kb on - strand, within EX28DRAFT_0268 at 229.304 kb on + strand, within EX28DRAFT_0268 at 229.304 kb on + strand, within EX28DRAFT_0268 at 229.305 kb on - strand, within EX28DRAFT_0268 at 229.307 kb on + strand, within EX28DRAFT_0268 at 229.307 kb on + strand, within EX28DRAFT_0268 at 229.308 kb on - strand, within EX28DRAFT_0268 at 229.420 kb on - strand, within EX28DRAFT_0268 at 229.422 kb on - strand, within EX28DRAFT_0268 at 229.422 kb on - strand, within EX28DRAFT_0268 at 229.434 kb on - strand, within EX28DRAFT_0268 at 229.464 kb on + strand, within EX28DRAFT_0268 at 229.464 kb on + strand, within EX28DRAFT_0268 at 229.465 kb on - strand, within EX28DRAFT_0268 at 229.467 kb on - strand, within EX28DRAFT_0268 at 229.493 kb on - strand, within EX28DRAFT_0268 at 229.569 kb on + strand, within EX28DRAFT_0268 at 229.570 kb on - strand, within EX28DRAFT_0268 at 229.571 kb on + strand, within EX28DRAFT_0268 at 229.572 kb on - strand, within EX28DRAFT_0268 at 229.572 kb on - strand, within EX28DRAFT_0268 at 229.572 kb on - strand, within EX28DRAFT_0268 at 229.636 kb on - strand, within EX28DRAFT_0268 at 229.667 kb on + strand, within EX28DRAFT_0268 at 229.834 kb on - strand, within EX28DRAFT_0268 at 229.834 kb on - strand, within EX28DRAFT_0268 at 229.838 kb on + strand, within EX28DRAFT_0268 at 229.839 kb on - strand, within EX28DRAFT_0268 at 229.983 kb on - strand, within EX28DRAFT_0268 at 229.983 kb on - strand, within EX28DRAFT_0268 at 229.983 kb on - strand, within EX28DRAFT_0268 at 229.983 kb on - strand, within EX28DRAFT_0268 at 229.986 kb on + strand, within EX28DRAFT_0268 at 230.116 kb on - strand, within EX28DRAFT_0268 at 230.401 kb on + strand at 230.405 kb on + strand at 230.406 kb on - strand at 230.440 kb on + strand at 230.440 kb on + strand at 230.471 kb on + strand at 230.473 kb on + strand at 230.628 kb on + strand at 230.734 kb on - strand at 230.775 kb on + strand, within EX28DRAFT_0269 at 230.776 kb on - strand, within EX28DRAFT_0269 at 230.821 kb on + strand, within EX28DRAFT_0269 at 230.821 kb on + strand, within EX28DRAFT_0269 at 231.074 kb on - strand at 231.077 kb on - strand at 231.090 kb on + strand at 231.112 kb on - strand at 231.243 kb on - strand at 231.295 kb on - strand at 231.295 kb on - strand at 231.295 kb on - strand at 231.315 kb on + strand at 231.345 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 228,131 + +0.2 228,132 - -0.0 228,132 - -0.6 228,153 + -0.1 228,222 + +1.0 228,237 + +2.6 228,237 + +0.2 228,238 - +0.3 228,241 + +0.0 228,241 + +0.4 228,242 - -1.6 228,356 + EX28DRAFT_0267 0.15 +0.2 228,356 + EX28DRAFT_0267 0.15 +0.0 228,356 + EX28DRAFT_0267 0.15 -0.3 228,368 + EX28DRAFT_0267 0.17 -1.4 228,386 + EX28DRAFT_0267 0.19 -0.3 228,387 - EX28DRAFT_0267 0.19 +0.3 228,387 - EX28DRAFT_0267 0.19 -0.0 228,451 - EX28DRAFT_0267 0.28 +0.1 228,455 - EX28DRAFT_0267 0.28 +0.9 228,498 - EX28DRAFT_0267 0.34 -0.8 228,580 + EX28DRAFT_0267 0.45 +0.8 228,688 - EX28DRAFT_0267 0.59 -0.1 228,696 - EX28DRAFT_0267 0.60 -0.0 228,700 + EX28DRAFT_0267 0.61 +0.2 228,871 + EX28DRAFT_0267 0.84 -0.1 228,871 + EX28DRAFT_0267 0.84 +0.6 228,871 + EX28DRAFT_0267 0.84 -0.8 228,876 + EX28DRAFT_0267 0.84 -0.2 228,876 + EX28DRAFT_0267 0.84 +2.0 228,876 + EX28DRAFT_0267 0.84 -0.6 228,877 - EX28DRAFT_0267 0.84 +0.1 228,887 + EX28DRAFT_0267 0.86 -1.0 228,973 - +1.5 229,041 - +0.3 229,049 + -2.6 229,068 - +0.7 229,080 + -0.3 229,101 - -0.1 229,101 - -0.5 229,137 + -0.3 229,137 + +2.3 229,137 + -0.2 229,137 + -0.4 229,137 + +0.7 229,138 + -0.8 229,138 - +1.2 229,138 - -0.5 229,138 - -1.1 229,138 - -0.4 229,139 + +3.6 229,139 + +5.5 229,139 + -1.6 229,139 + -0.5 229,140 - +0.9 229,140 - +0.4 229,140 - +2.7 229,140 - -0.1 229,158 + +0.2 229,159 - +0.8 229,159 - -1.0 229,181 + EX28DRAFT_0268 0.11 -0.4 229,230 + EX28DRAFT_0268 0.14 +0.8 229,303 - EX28DRAFT_0268 0.20 +0.0 229,304 + EX28DRAFT_0268 0.20 +2.3 229,304 + EX28DRAFT_0268 0.20 -1.2 229,305 - EX28DRAFT_0268 0.20 +0.1 229,307 + EX28DRAFT_0268 0.20 +0.7 229,307 + EX28DRAFT_0268 0.20 -0.2 229,308 - EX28DRAFT_0268 0.20 -0.1 229,420 - EX28DRAFT_0268 0.29 +1.1 229,422 - EX28DRAFT_0268 0.29 +1.2 229,422 - EX28DRAFT_0268 0.29 -0.3 229,434 - EX28DRAFT_0268 0.30 +0.2 229,464 + EX28DRAFT_0268 0.32 +0.5 229,464 + EX28DRAFT_0268 0.32 +0.4 229,465 - EX28DRAFT_0268 0.32 +1.2 229,467 - EX28DRAFT_0268 0.32 +0.1 229,493 - EX28DRAFT_0268 0.34 +1.4 229,569 + EX28DRAFT_0268 0.40 +0.3 229,570 - EX28DRAFT_0268 0.40 +0.5 229,571 + EX28DRAFT_0268 0.40 -0.8 229,572 - EX28DRAFT_0268 0.40 +0.3 229,572 - EX28DRAFT_0268 0.40 +0.2 229,572 - EX28DRAFT_0268 0.40 -0.2 229,636 - EX28DRAFT_0268 0.45 +0.2 229,667 + EX28DRAFT_0268 0.47 -1.0 229,834 - EX28DRAFT_0268 0.60 -2.0 229,834 - EX28DRAFT_0268 0.60 -0.6 229,838 + EX28DRAFT_0268 0.60 +0.9 229,839 - EX28DRAFT_0268 0.60 -1.2 229,983 - EX28DRAFT_0268 0.71 +0.5 229,983 - EX28DRAFT_0268 0.71 +0.8 229,983 - EX28DRAFT_0268 0.71 -0.0 229,983 - EX28DRAFT_0268 0.71 +1.0 229,986 + EX28DRAFT_0268 0.72 -1.4 230,116 - EX28DRAFT_0268 0.81 +0.5 230,401 + -1.3 230,405 + +0.5 230,406 - -0.7 230,440 + -0.4 230,440 + +0.1 230,471 + +0.2 230,473 + -0.5 230,628 + +1.6 230,734 - -1.0 230,775 + EX28DRAFT_0269 0.14 +0.5 230,776 - EX28DRAFT_0269 0.15 +0.6 230,821 + EX28DRAFT_0269 0.31 -0.3 230,821 + EX28DRAFT_0269 0.31 -0.1 231,074 - -0.4 231,077 - +0.4 231,090 + +3.2 231,112 - +1.3 231,243 - +1.0 231,295 - +0.3 231,295 - -0.7 231,295 - -1.7 231,315 + +0.6 231,345 - +0.2
Or see this region's nucleotide sequence