Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0157 and EX28DRAFT_0158 are separated by 115 nucleotides EX28DRAFT_0158 and EX28DRAFT_0159 are separated by 10 nucleotides EX28DRAFT_0159 and EX28DRAFT_0160 are separated by 11 nucleotides EX28DRAFT_0160 and EX28DRAFT_0161 are separated by 50 nucleotides
EX28DRAFT_0157: EX28DRAFT_0157 - Arabinose efflux permease, at 104,190 to 105,404
_0157
EX28DRAFT_0158: EX28DRAFT_0158 - transcriptional regulator, HxlR family, at 105,520 to 105,963
_0158
EX28DRAFT_0159: EX28DRAFT_0159 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 105,974 to 106,717
_0159
EX28DRAFT_0160: EX28DRAFT_0160 - hypothetical protein, at 106,729 to 107,196
_0160
EX28DRAFT_0161: EX28DRAFT_0161 - Cyanate permease, at 107,247 to 108,476
_0161
Position (kb) 105
106
107 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 105.062 kb on + strand, within EX28DRAFT_0157 at 105.150 kb on + strand, within EX28DRAFT_0157 at 105.151 kb on - strand, within EX28DRAFT_0157 at 105.308 kb on - strand at 105.308 kb on - strand at 105.310 kb on + strand at 105.405 kb on - strand at 105.405 kb on - strand at 105.459 kb on + strand at 105.460 kb on - strand at 105.485 kb on + strand at 105.491 kb on + strand at 105.492 kb on - strand at 105.537 kb on - strand at 105.547 kb on + strand at 105.547 kb on + strand at 105.547 kb on + strand at 105.548 kb on - strand at 105.610 kb on - strand, within EX28DRAFT_0158 at 105.722 kb on + strand, within EX28DRAFT_0158 at 105.757 kb on + strand, within EX28DRAFT_0158 at 105.758 kb on - strand, within EX28DRAFT_0158 at 105.758 kb on - strand, within EX28DRAFT_0158 at 105.758 kb on - strand, within EX28DRAFT_0158 at 105.979 kb on + strand at 105.979 kb on + strand at 105.979 kb on + strand at 105.980 kb on - strand at 106.137 kb on + strand, within EX28DRAFT_0159 at 106.289 kb on + strand, within EX28DRAFT_0159 at 106.289 kb on + strand, within EX28DRAFT_0159 at 106.289 kb on + strand, within EX28DRAFT_0159 at 106.289 kb on + strand, within EX28DRAFT_0159 at 106.290 kb on - strand, within EX28DRAFT_0159 at 106.290 kb on - strand, within EX28DRAFT_0159 at 106.310 kb on - strand, within EX28DRAFT_0159 at 106.442 kb on + strand, within EX28DRAFT_0159 at 106.597 kb on + strand, within EX28DRAFT_0159 at 106.651 kb on + strand at 106.701 kb on - strand at 106.816 kb on - strand, within EX28DRAFT_0160 at 106.816 kb on - strand, within EX28DRAFT_0160 at 107.248 kb on + strand at 107.261 kb on + strand at 107.322 kb on + strand at 107.322 kb on + strand at 107.426 kb on + strand, within EX28DRAFT_0161 at 107.506 kb on + strand, within EX28DRAFT_0161 at 107.507 kb on - strand, within EX28DRAFT_0161 at 107.609 kb on + strand, within EX28DRAFT_0161 at 107.609 kb on + strand, within EX28DRAFT_0161 at 107.609 kb on + strand, within EX28DRAFT_0161 at 107.609 kb on + strand, within EX28DRAFT_0161
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 105,062 + EX28DRAFT_0157 0.72 +1.1 105,150 + EX28DRAFT_0157 0.79 +0.3 105,151 - EX28DRAFT_0157 0.79 +0.4 105,308 - -0.2 105,308 - +0.2 105,310 + -0.0 105,405 - +0.6 105,405 - +0.1 105,459 + -1.2 105,460 - +0.1 105,485 + +1.1 105,491 + +0.2 105,492 - +0.9 105,537 - +0.5 105,547 + +0.7 105,547 + -1.2 105,547 + +1.3 105,548 - -3.0 105,610 - EX28DRAFT_0158 0.20 +0.0 105,722 + EX28DRAFT_0158 0.45 -0.7 105,757 + EX28DRAFT_0158 0.53 +0.4 105,758 - EX28DRAFT_0158 0.54 -3.8 105,758 - EX28DRAFT_0158 0.54 -0.2 105,758 - EX28DRAFT_0158 0.54 +0.1 105,979 + -0.3 105,979 + +2.4 105,979 + -0.3 105,980 - +1.1 106,137 + EX28DRAFT_0159 0.22 -0.0 106,289 + EX28DRAFT_0159 0.42 +0.4 106,289 + EX28DRAFT_0159 0.42 -0.1 106,289 + EX28DRAFT_0159 0.42 +0.8 106,289 + EX28DRAFT_0159 0.42 +2.4 106,290 - EX28DRAFT_0159 0.42 -0.3 106,290 - EX28DRAFT_0159 0.42 -0.5 106,310 - EX28DRAFT_0159 0.45 +0.4 106,442 + EX28DRAFT_0159 0.63 +0.3 106,597 + EX28DRAFT_0159 0.84 +0.3 106,651 + +0.3 106,701 - +0.3 106,816 - EX28DRAFT_0160 0.19 +0.2 106,816 - EX28DRAFT_0160 0.19 +3.5 107,248 + -0.5 107,261 + -0.4 107,322 + -0.0 107,322 + -0.4 107,426 + EX28DRAFT_0161 0.15 +0.7 107,506 + EX28DRAFT_0161 0.21 +0.9 107,507 - EX28DRAFT_0161 0.21 +0.3 107,609 + EX28DRAFT_0161 0.29 -0.2 107,609 + EX28DRAFT_0161 0.29 +0.5 107,609 + EX28DRAFT_0161 0.29 -1.6 107,609 + EX28DRAFT_0161 0.29 +1.8
Or see this region's nucleotide sequence