Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0104

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0103 and EX28DRAFT_0104 are separated by 125 nucleotidesEX28DRAFT_0104 and EX28DRAFT_0105 overlap by 10 nucleotides EX28DRAFT_0103: EX28DRAFT_0103 - Transcriptional antiterminator, at 43,914 to 45,191 _0103 EX28DRAFT_0104: EX28DRAFT_0104 - ABC-type uncharacterized transport system, periplasmic component, at 45,317 to 45,955 _0104 EX28DRAFT_0105: EX28DRAFT_0105 - ABC-type uncharacterized transport system, permease component, at 45,946 to 46,926 _0105 Position (kb) 45 46Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 44.400 kb on - strand, within EX28DRAFT_0103at 44.400 kb on - strand, within EX28DRAFT_0103at 44.401 kb on + strand, within EX28DRAFT_0103at 44.401 kb on + strand, within EX28DRAFT_0103at 44.401 kb on + strand, within EX28DRAFT_0103at 44.401 kb on + strand, within EX28DRAFT_0103at 44.401 kb on + strand, within EX28DRAFT_0103at 44.402 kb on - strand, within EX28DRAFT_0103at 44.402 kb on - strand, within EX28DRAFT_0103at 44.402 kb on - strand, within EX28DRAFT_0103at 44.402 kb on - strand, within EX28DRAFT_0103at 44.402 kb on - strand, within EX28DRAFT_0103at 44.402 kb on - strand, within EX28DRAFT_0103at 44.546 kb on + strand, within EX28DRAFT_0103at 44.634 kb on - strand, within EX28DRAFT_0103at 44.638 kb on + strand, within EX28DRAFT_0103at 44.719 kb on + strand, within EX28DRAFT_0103at 44.719 kb on + strand, within EX28DRAFT_0103at 44.728 kb on + strand, within EX28DRAFT_0103at 44.737 kb on - strand, within EX28DRAFT_0103at 44.821 kb on + strand, within EX28DRAFT_0103at 44.874 kb on - strand, within EX28DRAFT_0103at 45.040 kb on - strand, within EX28DRAFT_0103at 45.040 kb on - strand, within EX28DRAFT_0103at 45.041 kb on + strand, within EX28DRAFT_0103at 45.042 kb on - strand, within EX28DRAFT_0103at 45.042 kb on - strand, within EX28DRAFT_0103at 45.042 kb on - strand, within EX28DRAFT_0103at 45.042 kb on - strand, within EX28DRAFT_0103at 45.084 kb on + strandat 45.085 kb on - strandat 45.085 kb on - strandat 45.227 kb on - strandat 45.398 kb on - strand, within EX28DRAFT_0104at 45.494 kb on + strand, within EX28DRAFT_0104at 45.494 kb on + strand, within EX28DRAFT_0104at 45.494 kb on + strand, within EX28DRAFT_0104at 45.494 kb on + strand, within EX28DRAFT_0104at 45.494 kb on + strand, within EX28DRAFT_0104at 45.495 kb on - strand, within EX28DRAFT_0104at 45.495 kb on - strand, within EX28DRAFT_0104at 45.745 kb on + strand, within EX28DRAFT_0104at 45.745 kb on + strand, within EX28DRAFT_0104at 45.746 kb on - strand, within EX28DRAFT_0104at 45.749 kb on + strand, within EX28DRAFT_0104at 45.749 kb on + strand, within EX28DRAFT_0104at 45.749 kb on + strand, within EX28DRAFT_0104at 45.749 kb on + strand, within EX28DRAFT_0104at 45.749 kb on + strand, within EX28DRAFT_0104at 45.750 kb on - strand, within EX28DRAFT_0104at 45.750 kb on - strand, within EX28DRAFT_0104at 45.752 kb on + strand, within EX28DRAFT_0104at 45.752 kb on + strand, within EX28DRAFT_0104at 45.752 kb on + strand, within EX28DRAFT_0104at 45.753 kb on - strand, within EX28DRAFT_0104at 45.753 kb on - strand, within EX28DRAFT_0104at 45.753 kb on - strand, within EX28DRAFT_0104at 45.786 kb on + strand, within EX28DRAFT_0104at 45.787 kb on - strand, within EX28DRAFT_0104at 45.787 kb on - strand, within EX28DRAFT_0104at 45.832 kb on + strand, within EX28DRAFT_0104at 45.832 kb on + strand, within EX28DRAFT_0104at 45.833 kb on - strand, within EX28DRAFT_0104at 45.833 kb on - strand, within EX28DRAFT_0104at 45.833 kb on - strand, within EX28DRAFT_0104at 45.833 kb on - strand, within EX28DRAFT_0104at 45.833 kb on - strand, within EX28DRAFT_0104at 45.942 kb on + strandat 45.943 kb on - strandat 46.080 kb on + strand, within EX28DRAFT_0105at 46.081 kb on - strand, within EX28DRAFT_0105at 46.182 kb on + strand, within EX28DRAFT_0105at 46.183 kb on - strand, within EX28DRAFT_0105at 46.183 kb on - strand, within EX28DRAFT_0105at 46.186 kb on + strand, within EX28DRAFT_0105at 46.187 kb on - strand, within EX28DRAFT_0105at 46.284 kb on + strand, within EX28DRAFT_0105at 46.285 kb on - strand, within EX28DRAFT_0105at 46.352 kb on + strand, within EX28DRAFT_0105at 46.353 kb on - strand, within EX28DRAFT_0105at 46.605 kb on + strand, within EX28DRAFT_0105at 46.660 kb on - strand, within EX28DRAFT_0105at 46.660 kb on - strand, within EX28DRAFT_0105at 46.794 kb on + strand, within EX28DRAFT_0105at 46.929 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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44,400 - EX28DRAFT_0103 0.38 -3.0
44,400 - EX28DRAFT_0103 0.38 +0.2
44,401 + EX28DRAFT_0103 0.38 -2.2
44,401 + EX28DRAFT_0103 0.38 +0.1
44,401 + EX28DRAFT_0103 0.38 -2.3
44,401 + EX28DRAFT_0103 0.38 +0.6
44,401 + EX28DRAFT_0103 0.38 +0.1
44,402 - EX28DRAFT_0103 0.38 -0.1
44,402 - EX28DRAFT_0103 0.38 +0.2
44,402 - EX28DRAFT_0103 0.38 -2.1
44,402 - EX28DRAFT_0103 0.38 -0.1
44,402 - EX28DRAFT_0103 0.38 -0.9
44,402 - EX28DRAFT_0103 0.38 +0.4
44,546 + EX28DRAFT_0103 0.49 -1.2
44,634 - EX28DRAFT_0103 0.56 +0.6
44,638 + EX28DRAFT_0103 0.57 -0.8
44,719 + EX28DRAFT_0103 0.63 -0.1
44,719 + EX28DRAFT_0103 0.63 +1.0
44,728 + EX28DRAFT_0103 0.64 -0.1
44,737 - EX28DRAFT_0103 0.64 +1.4
44,821 + EX28DRAFT_0103 0.71 -1.3
44,874 - EX28DRAFT_0103 0.75 -0.4
45,040 - EX28DRAFT_0103 0.88 -0.4
45,040 - EX28DRAFT_0103 0.88 -0.1
45,041 + EX28DRAFT_0103 0.88 +0.3
45,042 - EX28DRAFT_0103 0.88 +0.7
45,042 - EX28DRAFT_0103 0.88 +0.4
45,042 - EX28DRAFT_0103 0.88 +0.8
45,042 - EX28DRAFT_0103 0.88 -0.7
45,084 + -0.4
45,085 - +0.5
45,085 - +0.3
45,227 - +0.9
45,398 - EX28DRAFT_0104 0.13 +0.3
45,494 + EX28DRAFT_0104 0.28 +0.4
45,494 + EX28DRAFT_0104 0.28 +0.1
45,494 + EX28DRAFT_0104 0.28 -0.3
45,494 + EX28DRAFT_0104 0.28 +0.2
45,494 + EX28DRAFT_0104 0.28 -0.7
45,495 - EX28DRAFT_0104 0.28 -0.5
45,495 - EX28DRAFT_0104 0.28 +0.6
45,745 + EX28DRAFT_0104 0.67 -1.6
45,745 + EX28DRAFT_0104 0.67 -0.3
45,746 - EX28DRAFT_0104 0.67 -0.3
45,749 + EX28DRAFT_0104 0.68 +1.0
45,749 + EX28DRAFT_0104 0.68 -0.2
45,749 + EX28DRAFT_0104 0.68 +0.8
45,749 + EX28DRAFT_0104 0.68 +0.5
45,749 + EX28DRAFT_0104 0.68 -3.4
45,750 - EX28DRAFT_0104 0.68 +1.3
45,750 - EX28DRAFT_0104 0.68 +0.0
45,752 + EX28DRAFT_0104 0.68 +0.6
45,752 + EX28DRAFT_0104 0.68 +0.6
45,752 + EX28DRAFT_0104 0.68 +2.4
45,753 - EX28DRAFT_0104 0.68 +1.6
45,753 - EX28DRAFT_0104 0.68 +0.3
45,753 - EX28DRAFT_0104 0.68 +0.1
45,786 + EX28DRAFT_0104 0.73 +0.1
45,787 - EX28DRAFT_0104 0.74 +0.2
45,787 - EX28DRAFT_0104 0.74 +0.7
45,832 + EX28DRAFT_0104 0.81 +1.1
45,832 + EX28DRAFT_0104 0.81 -0.8
45,833 - EX28DRAFT_0104 0.81 +0.8
45,833 - EX28DRAFT_0104 0.81 -0.6
45,833 - EX28DRAFT_0104 0.81 -0.8
45,833 - EX28DRAFT_0104 0.81 -2.4
45,833 - EX28DRAFT_0104 0.81 -0.5
45,942 + -0.4
45,943 - -2.2
46,080 + EX28DRAFT_0105 0.14 -0.9
46,081 - EX28DRAFT_0105 0.14 -0.5
46,182 + EX28DRAFT_0105 0.24 +0.3
46,183 - EX28DRAFT_0105 0.24 -2.7
46,183 - EX28DRAFT_0105 0.24 +0.1
46,186 + EX28DRAFT_0105 0.24 -0.2
46,187 - EX28DRAFT_0105 0.25 -0.5
46,284 + EX28DRAFT_0105 0.34 -0.0
46,285 - EX28DRAFT_0105 0.35 +0.8
46,352 + EX28DRAFT_0105 0.41 -1.2
46,353 - EX28DRAFT_0105 0.41 -1.0
46,605 + EX28DRAFT_0105 0.67 +0.3
46,660 - EX28DRAFT_0105 0.73 -1.0
46,660 - EX28DRAFT_0105 0.73 +2.4
46,794 + EX28DRAFT_0105 0.86 -0.2
46,929 + -0.2

Or see this region's nucleotide sequence