Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS25815

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
1,343,566	+		ABIE40_RS25810	0.34	+0.5
1,343,746	-		ABIE40_RS25810	0.47	+0.8
1,343,765	+		ABIE40_RS25810	0.48	+1.4
1,343,765	+		ABIE40_RS25810	0.48	-1.5
1,343,765	+		ABIE40_RS25810	0.48	-1.2
1,343,766	-		ABIE40_RS25810	0.48	-1.1
1,343,766	-		ABIE40_RS25810	0.48	-0.3
1,343,766	-		ABIE40_RS25810	0.48	-0.4
1,343,823	+		ABIE40_RS25810	0.52	+0.9
1,343,823	+		ABIE40_RS25810	0.52	+0.8
1,343,823	+		ABIE40_RS25810	0.52	+0.6
1,343,823	+		ABIE40_RS25810	0.52	+0.7
1,343,824	-		ABIE40_RS25810	0.52	+0.4
1,343,824	-		ABIE40_RS25810	0.52	-0.2
1,343,824	-		ABIE40_RS25810	0.52	-0.4
1,343,824	-		ABIE40_RS25810	0.52	+1.2
1,343,824	-		ABIE40_RS25810	0.52	+0.7
1,343,826	-		ABIE40_RS25810	0.52	+1.5
1,343,826	-		ABIE40_RS25810	0.52	+0.5
1,343,846	+		ABIE40_RS25810	0.54	+0.9
1,343,846	+		ABIE40_RS25810	0.54	-2.0
1,344,027	+		ABIE40_RS25810	0.67	+0.0
1,344,028	-		ABIE40_RS25810	0.67	+0.7
1,344,209	-		ABIE40_RS25810	0.80	-0.1
1,344,211	+		ABIE40_RS25810	0.80	-2.2
1,344,211	+		ABIE40_RS25810	0.80	+0.6
1,344,211	+		ABIE40_RS25810	0.80	+0.6
1,344,211	+		ABIE40_RS25810	0.80	+1.1
1,344,211	+		ABIE40_RS25810	0.80	+0.3
1,344,212	-		ABIE40_RS25810	0.80	+0.9
1,344,212	-		ABIE40_RS25810	0.80	-0.2
1,344,268	-		ABIE40_RS25810	0.84	+0.2
1,344,268	-		ABIE40_RS25810	0.84	+0.2
1,344,268	-		ABIE40_RS25810	0.84	-1.1
1,344,268	-		ABIE40_RS25810	0.84	+2.6
1,344,399	+				+1.1
1,344,399	+				-0.1
1,344,411	+				+0.3
1,344,411	+				+0.5
1,344,411	+				+0.1
1,344,411	+				-1.1
1,344,411	+				+1.3
1,344,412	-				-2.8
1,344,412	-				-0.1
1,344,412	-				-1.0
1,344,412	-				-1.9
1,344,412	-				-1.5
1,344,560	+		ABIE40_RS25815	0.10	-0.5
1,344,560	+		ABIE40_RS25815	0.10	+0.2
1,344,561	-		ABIE40_RS25815	0.10	-0.0
1,344,622	+		ABIE40_RS25815	0.21	-0.9
1,344,623	-		ABIE40_RS25815	0.21	-1.4
1,344,623	-		ABIE40_RS25815	0.21	+0.2
1,344,685	+		ABIE40_RS25815	0.32	-0.5
1,344,686	-		ABIE40_RS25815	0.32	+0.1
1,344,700	+		ABIE40_RS25815	0.35	+0.0
1,344,700	+		ABIE40_RS25815	0.35	-1.5
1,344,700	+		ABIE40_RS25815	0.35	-0.3
1,344,776	+		ABIE40_RS25815	0.48	-0.2
1,344,776	+		ABIE40_RS25815	0.48	-0.1
1,344,776	+		ABIE40_RS25815	0.48	+0.2
1,344,776	+		ABIE40_RS25815	0.48	+3.0
1,344,776	+		ABIE40_RS25815	0.48	-0.3
1,344,776	+		ABIE40_RS25815	0.48	-0.8
1,344,777	-		ABIE40_RS25815	0.48	-0.6
1,344,777	-		ABIE40_RS25815	0.48	+1.0
1,344,777	-		ABIE40_RS25815	0.48	+1.5
1,344,778	+		ABIE40_RS25815	0.48	+0.2
1,344,778	+		ABIE40_RS25815	0.48	-0.3
1,344,778	+		ABIE40_RS25815	0.48	+0.0
1,344,778	+		ABIE40_RS25815	0.48	-1.7
1,344,778	+		ABIE40_RS25815	0.48	-2.0
1,344,778	+		ABIE40_RS25815	0.48	-0.3
1,344,779	-		ABIE40_RS25815	0.49	+0.8
1,344,779	-		ABIE40_RS25815	0.49	+0.8
1,344,779	-		ABIE40_RS25815	0.49	-0.4
1,344,779	-		ABIE40_RS25815	0.49	+2.5
1,344,779	-		ABIE40_RS25815	0.49	+1.1
1,344,779	-		ABIE40_RS25815	0.49	+2.3
1,344,779	-		ABIE40_RS25815	0.49	+0.3
1,344,779	-		ABIE40_RS25815	0.49	+0.2
1,344,784	+		ABIE40_RS25815	0.49	-2.8
1,344,784	+		ABIE40_RS25815	0.49	-0.8
1,344,784	+		ABIE40_RS25815	0.49	+0.6
1,344,784	+		ABIE40_RS25815	0.49	-0.2
1,344,784	+		ABIE40_RS25815	0.49	-0.1
1,344,784	+		ABIE40_RS25815	0.49	-1.2
1,344,784	+		ABIE40_RS25815	0.49	-2.0
1,344,785	-		ABIE40_RS25815	0.50	+0.8
1,344,785	-		ABIE40_RS25815	0.50	-0.8
1,344,785	-		ABIE40_RS25815	0.50	+0.3
1,344,785	-		ABIE40_RS25815	0.50	+0.8
1,344,785	-		ABIE40_RS25815	0.50	-0.8
1,344,785	-		ABIE40_RS25815	0.50	-0.6
1,344,785	-		ABIE40_RS25815	0.50	+3.6
1,344,889	+		ABIE40_RS25815	0.68	-0.1
1,344,889	+		ABIE40_RS25815	0.68	-0.2
1,344,890	-		ABIE40_RS25815	0.68	+0.5
1,344,907	+		ABIE40_RS25815	0.71	-0.4
1,344,907	+		ABIE40_RS25815	0.71	+5.0
1,344,907	+		ABIE40_RS25815	0.71	+1.6
1,344,907	+		ABIE40_RS25815	0.71	+0.1
1,344,907	+		ABIE40_RS25815	0.71	+1.6
1,344,908	-		ABIE40_RS25815	0.71	-1.2
1,344,908	-		ABIE40_RS25815	0.71	-0.7
1,344,908	-		ABIE40_RS25815	0.71	+2.6
1,344,996	-		ABIE40_RS25815	0.86	-1.8
1,344,996	-		ABIE40_RS25815	0.86	+1.5
1,345,056	-				-2.9
1,345,525	+		ABIE40_RS25820	0.40	+0.3
1,345,525	+		ABIE40_RS25820	0.40	-0.5
1,345,526	-		ABIE40_RS25820	0.40	+0.1
1,345,626	-		ABIE40_RS25820	0.50	-0.9
1,345,626	-		ABIE40_RS25820	0.50	-1.6
1,345,675	+		ABIE40_RS25820	0.55	+0.4
1,345,675	+		ABIE40_RS25820	0.55	+1.0
1,345,675	+		ABIE40_RS25820	0.55	+0.5
1,345,676	-		ABIE40_RS25820	0.55	+0.0
1,345,676	-		ABIE40_RS25820	0.55	-1.4
1,345,676	-		ABIE40_RS25820	0.55	-1.6
1,345,678	+		ABIE40_RS25820	0.55	-0.8
1,345,678	+		ABIE40_RS25820	0.55	-3.6
1,345,678	+		ABIE40_RS25820	0.55	+0.2
1,345,679	-		ABIE40_RS25820	0.56	-0.8
1,345,679	-		ABIE40_RS25820	0.56	+0.2
1,345,679	-		ABIE40_RS25820	0.56	-0.4
1,345,679	-		ABIE40_RS25820	0.56	-0.8
1,345,717	+		ABIE40_RS25820	0.59	+0.9
1,345,755	-		ABIE40_RS25820	0.63	-1.3
1,345,787	+		ABIE40_RS25820	0.67	+0.3
1,345,787	+		ABIE40_RS25820	0.67	-1.9
1,345,787	+		ABIE40_RS25820	0.67	+0.7
1,345,787	+		ABIE40_RS25820	0.67	-1.0
1,345,788	-		ABIE40_RS25820	0.67	-1.0
1,345,788	-		ABIE40_RS25820	0.67	-1.2
1,345,788	-		ABIE40_RS25820	0.67	+1.1
1,345,788	-		ABIE40_RS25820	0.67	-0.8
1,345,789	+		ABIE40_RS25820	0.67	+1.5
1,345,789	+		ABIE40_RS25820	0.67	-0.7
1,345,790	-		ABIE40_RS25820	0.67	-0.7
1,345,790	-		ABIE40_RS25820	0.67	-0.4
1,345,790	-		ABIE40_RS25820	0.67	+0.8
1,345,798	+		ABIE40_RS25820	0.68	+1.4
1,345,799	-		ABIE40_RS25820	0.68	-0.3
1,345,799	-		ABIE40_RS25820	0.68	-0.4
1,345,799	-		ABIE40_RS25820	0.68	-0.4
1,345,819	+		ABIE40_RS25820	0.70	+0.2
1,345,888	-		ABIE40_RS25820	0.77	+0.2
1,345,936	+		ABIE40_RS25820	0.82	+1.4
1,346,011	+		ABIE40_RS25820	0.90	-1.6
1,346,012	-		ABIE40_RS25820	0.90	+0.2