Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS21215 and ABIE40_RS21220 overlap by 4 nucleotides ABIE40_RS21220 and ABIE40_RS21225 overlap by 4 nucleotides ABIE40_RS21225 and ABIE40_RS21230 are separated by 84 nucleotides
ABIE40_RS21215: ABIE40_RS21215 - ABC transporter substrate-binding protein, at 357,690 to 358,574
_RS21215
ABIE40_RS21220: ABIE40_RS21220 - amino acid ABC transporter permease, at 358,571 to 359,527
_RS21220
ABIE40_RS21225: ABIE40_RS21225 - amino acid ABC transporter ATP-binding protein, at 359,524 to 360,303
_RS21225
ABIE40_RS21230: ABIE40_RS21230 - M20 aminoacylase family protein, at 360,388 to 361,569
_RS21230
Position (kb) 359
360
361 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 358.582 kb on + strand at 358.582 kb on + strand at 358.583 kb on - strand at 358.583 kb on - strand at 358.583 kb on - strand at 358.700 kb on + strand, within ABIE40_RS21220 at 358.757 kb on + strand, within ABIE40_RS21220 at 358.757 kb on + strand, within ABIE40_RS21220 at 358.790 kb on + strand, within ABIE40_RS21220 at 358.790 kb on + strand, within ABIE40_RS21220 at 358.790 kb on + strand, within ABIE40_RS21220 at 358.790 kb on + strand, within ABIE40_RS21220 at 358.790 kb on + strand, within ABIE40_RS21220 at 358.790 kb on + strand, within ABIE40_RS21220 at 358.790 kb on + strand, within ABIE40_RS21220 at 358.790 kb on + strand, within ABIE40_RS21220 at 358.791 kb on - strand, within ABIE40_RS21220 at 358.791 kb on - strand, within ABIE40_RS21220 at 358.791 kb on - strand, within ABIE40_RS21220 at 358.791 kb on - strand, within ABIE40_RS21220 at 358.791 kb on - strand, within ABIE40_RS21220 at 358.791 kb on - strand, within ABIE40_RS21220 at 358.955 kb on + strand, within ABIE40_RS21220 at 358.955 kb on + strand, within ABIE40_RS21220 at 358.956 kb on - strand, within ABIE40_RS21220 at 358.956 kb on - strand, within ABIE40_RS21220 at 358.956 kb on - strand, within ABIE40_RS21220 at 358.956 kb on - strand, within ABIE40_RS21220 at 358.956 kb on - strand, within ABIE40_RS21220 at 359.092 kb on + strand, within ABIE40_RS21220 at 359.093 kb on + strand, within ABIE40_RS21220 at 359.093 kb on + strand, within ABIE40_RS21220 at 359.093 kb on + strand, within ABIE40_RS21220 at 359.093 kb on + strand, within ABIE40_RS21220 at 359.093 kb on + strand, within ABIE40_RS21220 at 359.093 kb on + strand, within ABIE40_RS21220 at 359.093 kb on + strand, within ABIE40_RS21220 at 359.093 kb on + strand, within ABIE40_RS21220 at 359.093 kb on + strand, within ABIE40_RS21220 at 359.093 kb on + strand, within ABIE40_RS21220 at 359.093 kb on + strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.095 kb on + strand, within ABIE40_RS21220 at 359.096 kb on - strand, within ABIE40_RS21220 at 359.325 kb on - strand, within ABIE40_RS21220 at 359.414 kb on + strand, within ABIE40_RS21220 at 359.414 kb on + strand, within ABIE40_RS21220 at 359.414 kb on + strand, within ABIE40_RS21220 at 359.415 kb on - strand, within ABIE40_RS21220 at 359.427 kb on - strand, within ABIE40_RS21220 at 359.427 kb on - strand, within ABIE40_RS21220 at 359.427 kb on - strand, within ABIE40_RS21220 at 359.427 kb on - strand, within ABIE40_RS21220 at 359.429 kb on + strand, within ABIE40_RS21220 at 359.429 kb on + strand, within ABIE40_RS21220 at 359.429 kb on + strand, within ABIE40_RS21220 at 359.429 kb on + strand, within ABIE40_RS21220 at 359.429 kb on + strand, within ABIE40_RS21220 at 359.430 kb on - strand, within ABIE40_RS21220 at 359.430 kb on - strand, within ABIE40_RS21220 at 359.430 kb on - strand, within ABIE40_RS21220 at 359.430 kb on - strand, within ABIE40_RS21220 at 359.688 kb on + strand, within ABIE40_RS21225 at 359.688 kb on + strand, within ABIE40_RS21225 at 359.689 kb on - strand, within ABIE40_RS21225 at 359.689 kb on - strand, within ABIE40_RS21225 at 359.689 kb on - strand, within ABIE40_RS21225 at 359.689 kb on - strand, within ABIE40_RS21225 at 359.750 kb on - strand, within ABIE40_RS21225 at 359.784 kb on + strand, within ABIE40_RS21225 at 359.785 kb on - strand, within ABIE40_RS21225 at 359.846 kb on - strand, within ABIE40_RS21225 at 359.853 kb on + strand, within ABIE40_RS21225 at 359.977 kb on + strand, within ABIE40_RS21225 at 359.977 kb on + strand, within ABIE40_RS21225 at 359.977 kb on + strand, within ABIE40_RS21225 at 360.051 kb on - strand, within ABIE40_RS21225 at 360.051 kb on - strand, within ABIE40_RS21225 at 360.051 kb on - strand, within ABIE40_RS21225 at 360.051 kb on - strand, within ABIE40_RS21225 at 360.544 kb on + strand, within ABIE40_RS21230 at 360.544 kb on + strand, within ABIE40_RS21230 at 360.544 kb on + strand, within ABIE40_RS21230 at 360.545 kb on - strand, within ABIE40_RS21230 at 360.545 kb on - strand, within ABIE40_RS21230 at 360.545 kb on - strand, within ABIE40_RS21230 at 360.545 kb on - strand, within ABIE40_RS21230 at 360.673 kb on + strand, within ABIE40_RS21230 at 360.674 kb on - strand, within ABIE40_RS21230 at 360.674 kb on - strand, within ABIE40_RS21230 at 360.723 kb on + strand, within ABIE40_RS21230 at 360.723 kb on + strand, within ABIE40_RS21230 at 360.723 kb on + strand, within ABIE40_RS21230 at 360.723 kb on + strand, within ABIE40_RS21230 at 360.723 kb on + strand, within ABIE40_RS21230 at 360.724 kb on - strand, within ABIE40_RS21230 at 360.724 kb on - strand, within ABIE40_RS21230 at 360.724 kb on - strand, within ABIE40_RS21230 at 360.724 kb on - strand, within ABIE40_RS21230 at 360.724 kb on - strand, within ABIE40_RS21230 at 360.724 kb on - strand, within ABIE40_RS21230 at 360.724 kb on - strand, within ABIE40_RS21230 at 360.751 kb on + strand, within ABIE40_RS21230 at 360.752 kb on - strand, within ABIE40_RS21230 at 360.886 kb on + strand, within ABIE40_RS21230 at 360.887 kb on - strand, within ABIE40_RS21230 at 360.887 kb on - strand, within ABIE40_RS21230 at 360.887 kb on - strand, within ABIE40_RS21230 at 360.887 kb on - strand, within ABIE40_RS21230 at 361.282 kb on + strand, within ABIE40_RS21230 at 361.283 kb on - strand, within ABIE40_RS21230 at 361.283 kb on - strand, within ABIE40_RS21230
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 358,582 + -2.4 358,582 + -0.3 358,583 - +1.1 358,583 - +1.5 358,583 - +0.5 358,700 + ABIE40_RS21220 0.13 +1.5 358,757 + ABIE40_RS21220 0.19 -1.4 358,757 + ABIE40_RS21220 0.19 +0.1 358,790 + ABIE40_RS21220 0.23 -2.3 358,790 + ABIE40_RS21220 0.23 +1.8 358,790 + ABIE40_RS21220 0.23 +0.3 358,790 + ABIE40_RS21220 0.23 +0.1 358,790 + ABIE40_RS21220 0.23 +0.6 358,790 + ABIE40_RS21220 0.23 -0.4 358,790 + ABIE40_RS21220 0.23 +2.3 358,790 + ABIE40_RS21220 0.23 +0.3 358,791 - ABIE40_RS21220 0.23 +0.1 358,791 - ABIE40_RS21220 0.23 -0.7 358,791 - ABIE40_RS21220 0.23 -0.2 358,791 - ABIE40_RS21220 0.23 -0.3 358,791 - ABIE40_RS21220 0.23 +0.5 358,791 - ABIE40_RS21220 0.23 +0.6 358,955 + ABIE40_RS21220 0.40 -0.3 358,955 + ABIE40_RS21220 0.40 -2.1 358,956 - ABIE40_RS21220 0.40 +1.7 358,956 - ABIE40_RS21220 0.40 -1.0 358,956 - ABIE40_RS21220 0.40 +0.5 358,956 - ABIE40_RS21220 0.40 +0.4 358,956 - ABIE40_RS21220 0.40 +0.9 359,092 + ABIE40_RS21220 0.54 +1.0 359,093 + ABIE40_RS21220 0.55 -0.5 359,093 + ABIE40_RS21220 0.55 +1.2 359,093 + ABIE40_RS21220 0.55 -0.8 359,093 + ABIE40_RS21220 0.55 -0.5 359,093 + ABIE40_RS21220 0.55 -0.1 359,093 + ABIE40_RS21220 0.55 -0.6 359,093 + ABIE40_RS21220 0.55 +0.2 359,093 + ABIE40_RS21220 0.55 -1.4 359,093 + ABIE40_RS21220 0.55 +0.1 359,093 + ABIE40_RS21220 0.55 -0.4 359,093 + ABIE40_RS21220 0.55 -1.0 359,094 - ABIE40_RS21220 0.55 -0.6 359,094 - ABIE40_RS21220 0.55 -0.3 359,094 - ABIE40_RS21220 0.55 -0.7 359,094 - ABIE40_RS21220 0.55 -0.4 359,094 - ABIE40_RS21220 0.55 +0.8 359,094 - ABIE40_RS21220 0.55 -0.1 359,094 - ABIE40_RS21220 0.55 -2.2 359,094 - ABIE40_RS21220 0.55 +1.0 359,094 - ABIE40_RS21220 0.55 -0.0 359,094 - ABIE40_RS21220 0.55 -1.1 359,094 - ABIE40_RS21220 0.55 -1.5 359,094 - ABIE40_RS21220 0.55 +0.6 359,094 - ABIE40_RS21220 0.55 +0.2 359,094 - ABIE40_RS21220 0.55 -0.1 359,094 - ABIE40_RS21220 0.55 +0.5 359,095 + ABIE40_RS21220 0.55 -0.8 359,096 - ABIE40_RS21220 0.55 -2.7 359,325 - ABIE40_RS21220 0.79 -0.3 359,414 + ABIE40_RS21220 0.88 -0.5 359,414 + ABIE40_RS21220 0.88 +1.6 359,414 + ABIE40_RS21220 0.88 +1.7 359,415 - ABIE40_RS21220 0.88 -0.5 359,427 - ABIE40_RS21220 0.89 -0.5 359,427 - ABIE40_RS21220 0.89 +0.8 359,427 - ABIE40_RS21220 0.89 +1.0 359,427 - ABIE40_RS21220 0.89 +0.3 359,429 + ABIE40_RS21220 0.90 +4.0 359,429 + ABIE40_RS21220 0.90 +1.4 359,429 + ABIE40_RS21220 0.90 -2.2 359,429 + ABIE40_RS21220 0.90 +0.6 359,429 + ABIE40_RS21220 0.90 +0.2 359,430 - ABIE40_RS21220 0.90 -1.0 359,430 - ABIE40_RS21220 0.90 -1.3 359,430 - ABIE40_RS21220 0.90 -1.2 359,430 - ABIE40_RS21220 0.90 +0.9 359,688 + ABIE40_RS21225 0.21 -0.8 359,688 + ABIE40_RS21225 0.21 +0.2 359,689 - ABIE40_RS21225 0.21 -0.6 359,689 - ABIE40_RS21225 0.21 +0.0 359,689 - ABIE40_RS21225 0.21 -2.7 359,689 - ABIE40_RS21225 0.21 -1.5 359,750 - ABIE40_RS21225 0.29 +1.3 359,784 + ABIE40_RS21225 0.33 -2.7 359,785 - ABIE40_RS21225 0.33 -2.1 359,846 - ABIE40_RS21225 0.41 -0.3 359,853 + ABIE40_RS21225 0.42 -0.5 359,977 + ABIE40_RS21225 0.58 -0.5 359,977 + ABIE40_RS21225 0.58 -1.3 359,977 + ABIE40_RS21225 0.58 -0.9 360,051 - ABIE40_RS21225 0.68 +0.3 360,051 - ABIE40_RS21225 0.68 -1.5 360,051 - ABIE40_RS21225 0.68 +1.8 360,051 - ABIE40_RS21225 0.68 -0.7 360,544 + ABIE40_RS21230 0.13 -0.4 360,544 + ABIE40_RS21230 0.13 -1.7 360,544 + ABIE40_RS21230 0.13 +0.1 360,545 - ABIE40_RS21230 0.13 -2.3 360,545 - ABIE40_RS21230 0.13 +1.9 360,545 - ABIE40_RS21230 0.13 +2.3 360,545 - ABIE40_RS21230 0.13 -1.2 360,673 + ABIE40_RS21230 0.24 +0.3 360,674 - ABIE40_RS21230 0.24 -1.0 360,674 - ABIE40_RS21230 0.24 +0.9 360,723 + ABIE40_RS21230 0.28 -0.5 360,723 + ABIE40_RS21230 0.28 +1.9 360,723 + ABIE40_RS21230 0.28 +0.9 360,723 + ABIE40_RS21230 0.28 -0.3 360,723 + ABIE40_RS21230 0.28 -0.1 360,724 - ABIE40_RS21230 0.28 +0.1 360,724 - ABIE40_RS21230 0.28 -1.7 360,724 - ABIE40_RS21230 0.28 +0.7 360,724 - ABIE40_RS21230 0.28 -2.5 360,724 - ABIE40_RS21230 0.28 -1.2 360,724 - ABIE40_RS21230 0.28 +0.5 360,724 - ABIE40_RS21230 0.28 +0.8 360,751 + ABIE40_RS21230 0.31 +1.1 360,752 - ABIE40_RS21230 0.31 -0.0 360,886 + ABIE40_RS21230 0.42 -0.3 360,887 - ABIE40_RS21230 0.42 -0.9 360,887 - ABIE40_RS21230 0.42 +1.2 360,887 - ABIE40_RS21230 0.42 -0.5 360,887 - ABIE40_RS21230 0.42 +1.0 361,282 + ABIE40_RS21230 0.76 -0.7 361,283 - ABIE40_RS21230 0.76 +0.5 361,283 - ABIE40_RS21230 0.76 -0.2
Or see this region's nucleotide sequence