Strain Fitness in Escherichia coli BW25113 around b4031
Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | D-Ribose (C) |
---|---|---|---|---|---|
remove | |||||
4,237,907 | - | yjbT | b4620 | 0.38 | +0.4 |
4,237,911 | + | yjbT | b4620 | 0.40 | -0.2 |
4,237,911 | + | yjbT | b4620 | 0.40 | +0.3 |
4,237,931 | + | yjbT | b4620 | 0.47 | +0.0 |
4,237,931 | + | yjbT | b4620 | 0.47 | -0.1 |
4,237,950 | + | yjbT | b4620 | 0.54 | -0.5 |
4,237,963 | - | yjbT | b4620 | 0.58 | -0.1 |
4,238,017 | + | yjbT | b4620 | 0.78 | -0.4 |
4,238,017 | + | yjbT | b4620 | 0.78 | -0.8 |
4,238,320 | - | -0.3 | |||
4,238,331 | + | +0.4 | |||
4,238,331 | + | +0.2 | |||
4,238,335 | + | +0.4 | |||
4,238,360 | + | +0.7 | |||
4,238,419 | + | yjbA | b4030 | 0.17 | +0.3 |
4,238,419 | + | yjbA | b4030 | 0.17 | +1.0 |
4,238,526 | - | yjbA | b4030 | 0.43 | -1.9 |
4,238,600 | + | yjbA | b4030 | 0.61 | -0.0 |
4,238,631 | + | yjbA | b4030 | 0.69 | -0.4 |
4,238,631 | + | yjbA | b4030 | 0.69 | -0.4 |
4,238,686 | + | yjbA | b4030 | 0.82 | -1.5 |
4,238,686 | + | yjbA | b4030 | 0.82 | +0.9 |
4,238,718 | + | +0.5 | |||
4,238,786 | + | +0.1 | |||
4,238,786 | + | -0.5 | |||
4,238,794 | - | +0.3 | |||
4,238,807 | + | -0.3 | |||
4,239,030 | + | xylE | b4031 | 0.15 | +0.5 |
4,239,105 | + | xylE | b4031 | 0.21 | +0.8 |
4,239,115 | + | xylE | b4031 | 0.21 | +0.8 |
4,239,115 | + | xylE | b4031 | 0.21 | -0.2 |
4,239,139 | + | xylE | b4031 | 0.23 | -0.7 |
4,239,139 | + | xylE | b4031 | 0.23 | +1.7 |
4,239,147 | - | xylE | b4031 | 0.23 | -0.7 |
4,239,157 | - | xylE | b4031 | 0.24 | -0.3 |
4,239,159 | - | xylE | b4031 | 0.24 | -0.3 |
4,239,211 | - | xylE | b4031 | 0.28 | +0.4 |
4,239,211 | - | xylE | b4031 | 0.28 | -0.7 |
4,239,281 | - | xylE | b4031 | 0.32 | -0.2 |
4,239,297 | + | xylE | b4031 | 0.34 | +0.2 |
4,239,297 | + | xylE | b4031 | 0.34 | -0.8 |
4,239,333 | - | xylE | b4031 | 0.36 | +0.4 |
4,239,346 | + | xylE | b4031 | 0.37 | +0.5 |
4,239,346 | + | xylE | b4031 | 0.37 | +0.8 |
4,239,371 | + | xylE | b4031 | 0.39 | +0.5 |
4,239,379 | + | xylE | b4031 | 0.39 | +0.1 |
4,239,382 | + | xylE | b4031 | 0.39 | +1.2 |
4,239,384 | + | xylE | b4031 | 0.39 | +0.2 |
4,239,384 | + | xylE | b4031 | 0.39 | -0.7 |
4,239,384 | + | xylE | b4031 | 0.39 | -2.2 |
4,239,384 | + | xylE | b4031 | 0.39 | -0.0 |
4,239,389 | + | xylE | b4031 | 0.40 | -0.7 |
4,239,392 | - | xylE | b4031 | 0.40 | +0.3 |
4,239,392 | - | xylE | b4031 | 0.40 | +0.3 |
4,239,446 | - | xylE | b4031 | 0.44 | +0.8 |
4,239,446 | - | xylE | b4031 | 0.44 | -1.8 |
4,239,504 | - | xylE | b4031 | 0.48 | -0.5 |
4,239,504 | - | xylE | b4031 | 0.48 | +0.1 |
4,239,506 | + | xylE | b4031 | 0.48 | -0.7 |
4,239,506 | + | xylE | b4031 | 0.48 | +0.1 |
4,239,512 | - | xylE | b4031 | 0.48 | -1.0 |
4,239,513 | + | xylE | b4031 | 0.48 | +0.5 |
4,239,513 | + | xylE | b4031 | 0.48 | -0.9 |
4,239,513 | + | xylE | b4031 | 0.48 | +0.6 |
4,239,560 | + | xylE | b4031 | 0.51 | -0.3 |
4,239,560 | + | xylE | b4031 | 0.51 | -0.5 |
4,239,565 | + | xylE | b4031 | 0.52 | -0.4 |
4,239,569 | - | xylE | b4031 | 0.52 | -1.1 |
4,239,575 | + | xylE | b4031 | 0.52 | -0.3 |
4,239,581 | - | xylE | b4031 | 0.53 | -0.7 |
4,239,583 | - | xylE | b4031 | 0.53 | -0.5 |
4,239,583 | - | xylE | b4031 | 0.53 | +0.1 |
4,239,593 | + | xylE | b4031 | 0.54 | -1.0 |
4,239,593 | + | xylE | b4031 | 0.54 | +0.1 |
4,239,593 | + | xylE | b4031 | 0.54 | -0.1 |
4,239,593 | + | xylE | b4031 | 0.54 | -0.9 |
4,239,597 | + | xylE | b4031 | 0.54 | +0.7 |
4,239,610 | + | xylE | b4031 | 0.55 | +0.1 |
4,239,610 | + | xylE | b4031 | 0.55 | +0.0 |
4,239,619 | - | xylE | b4031 | 0.55 | +0.5 |
4,239,620 | + | xylE | b4031 | 0.55 | -0.9 |
4,239,620 | + | xylE | b4031 | 0.55 | -0.0 |
4,239,620 | + | xylE | b4031 | 0.55 | -0.3 |
4,239,621 | + | xylE | b4031 | 0.55 | +0.1 |
4,239,622 | + | xylE | b4031 | 0.56 | -0.2 |
4,239,622 | + | xylE | b4031 | 0.56 | +0.1 |
4,239,622 | + | xylE | b4031 | 0.56 | -0.0 |
4,239,622 | + | xylE | b4031 | 0.56 | +0.3 |
4,239,622 | + | xylE | b4031 | 0.56 | +0.8 |
4,239,622 | + | xylE | b4031 | 0.56 | +0.7 |
4,239,622 | + | xylE | b4031 | 0.56 | +0.2 |
4,239,622 | + | xylE | b4031 | 0.56 | +0.2 |
4,239,622 | + | xylE | b4031 | 0.56 | -1.3 |
4,239,622 | + | xylE | b4031 | 0.56 | -2.4 |
4,239,622 | + | xylE | b4031 | 0.56 | -0.8 |
4,239,622 | + | xylE | b4031 | 0.56 | +0.9 |
4,239,622 | + | xylE | b4031 | 0.56 | -0.5 |
4,239,622 | + | xylE | b4031 | 0.56 | -0.5 |
4,239,622 | + | xylE | b4031 | 0.56 | -0.3 |
4,239,622 | + | xylE | b4031 | 0.56 | -0.5 |
4,239,622 | + | xylE | b4031 | 0.56 | -0.4 |
4,239,622 | + | xylE | b4031 | 0.56 | -0.9 |
4,239,622 | + | xylE | b4031 | 0.56 | +0.9 |
4,239,622 | + | xylE | b4031 | 0.56 | -0.3 |
4,239,622 | + | xylE | b4031 | 0.56 | -0.2 |
4,239,622 | + | xylE | b4031 | 0.56 | +0.2 |
4,239,622 | + | xylE | b4031 | 0.56 | +0.9 |
4,239,622 | + | xylE | b4031 | 0.56 | +0.6 |
4,239,622 | + | xylE | b4031 | 0.56 | -1.1 |
4,239,622 | + | xylE | b4031 | 0.56 | +0.2 |
4,239,622 | + | xylE | b4031 | 0.56 | +0.1 |
4,239,622 | + | xylE | b4031 | 0.56 | -1.1 |
4,239,622 | + | xylE | b4031 | 0.56 | +0.8 |
4,239,622 | + | xylE | b4031 | 0.56 | -0.4 |
4,239,622 | + | xylE | b4031 | 0.56 | -0.7 |
4,239,622 | + | xylE | b4031 | 0.56 | +0.3 |
4,239,622 | + | xylE | b4031 | 0.56 | -0.2 |
4,239,622 | + | xylE | b4031 | 0.56 | +0.9 |
4,239,622 | + | xylE | b4031 | 0.56 | -0.2 |
4,239,622 | + | xylE | b4031 | 0.56 | +0.1 |
4,239,622 | + | xylE | b4031 | 0.56 | +0.3 |
4,239,622 | + | xylE | b4031 | 0.56 | +0.1 |
4,239,622 | + | xylE | b4031 | 0.56 | +0.1 |
4,239,622 | + | xylE | b4031 | 0.56 | +0.5 |
4,239,622 | + | xylE | b4031 | 0.56 | -0.8 |
4,239,622 | + | xylE | b4031 | 0.56 | -0.3 |
4,239,622 | + | xylE | b4031 | 0.56 | -0.1 |
4,239,622 | + | xylE | b4031 | 0.56 | -1.2 |
4,239,622 | + | xylE | b4031 | 0.56 | -0.6 |
4,239,622 | + | xylE | b4031 | 0.56 | +0.8 |
4,239,622 | + | xylE | b4031 | 0.56 | -0.8 |
4,239,622 | + | xylE | b4031 | 0.56 | +0.4 |
4,239,622 | + | xylE | b4031 | 0.56 | -0.4 |
4,239,622 | + | xylE | b4031 | 0.56 | -0.4 |
4,239,630 | - | xylE | b4031 | 0.56 | +0.8 |
4,239,630 | - | xylE | b4031 | 0.56 | -0.1 |
4,239,630 | - | xylE | b4031 | 0.56 | -0.5 |
4,239,630 | - | xylE | b4031 | 0.56 | -0.1 |
4,239,630 | - | xylE | b4031 | 0.56 | +0.0 |
4,239,630 | - | xylE | b4031 | 0.56 | +1.3 |
4,239,630 | - | xylE | b4031 | 0.56 | -1.0 |
4,239,630 | - | xylE | b4031 | 0.56 | -0.8 |
4,239,630 | - | xylE | b4031 | 0.56 | +0.3 |
4,239,630 | - | xylE | b4031 | 0.56 | -1.4 |
4,239,630 | - | xylE | b4031 | 0.56 | +0.4 |
4,239,630 | - | xylE | b4031 | 0.56 | -1.8 |
4,239,632 | + | xylE | b4031 | 0.56 | -1.2 |
4,239,632 | + | xylE | b4031 | 0.56 | -1.3 |
4,239,632 | + | xylE | b4031 | 0.56 | +0.3 |
4,239,632 | + | xylE | b4031 | 0.56 | -0.5 |
4,239,632 | + | xylE | b4031 | 0.56 | +0.6 |
4,239,632 | + | xylE | b4031 | 0.56 | -0.1 |
4,239,632 | + | xylE | b4031 | 0.56 | -0.2 |
4,239,632 | + | xylE | b4031 | 0.56 | +1.0 |
4,239,632 | + | xylE | b4031 | 0.56 | +1.0 |
4,239,632 | + | xylE | b4031 | 0.56 | -0.7 |
4,239,640 | - | xylE | b4031 | 0.57 | -0.1 |
4,239,642 | + | xylE | b4031 | 0.57 | +0.1 |
4,239,644 | + | xylE | b4031 | 0.57 | -0.1 |
4,239,647 | + | xylE | b4031 | 0.57 | -1.6 |
4,239,647 | + | xylE | b4031 | 0.57 | -0.2 |
4,239,647 | + | xylE | b4031 | 0.57 | -0.7 |
4,239,647 | + | xylE | b4031 | 0.57 | -0.3 |
4,239,652 | + | xylE | b4031 | 0.58 | +0.5 |
4,239,652 | + | xylE | b4031 | 0.58 | -0.0 |
4,239,652 | - | xylE | b4031 | 0.58 | +1.3 |
4,239,652 | - | xylE | b4031 | 0.58 | +0.3 |
4,239,655 | - | xylE | b4031 | 0.58 | +0.3 |
4,239,655 | - | xylE | b4031 | 0.58 | +0.2 |
4,239,655 | - | xylE | b4031 | 0.58 | -2.2 |
4,239,655 | - | xylE | b4031 | 0.58 | -0.1 |
4,239,678 | + | xylE | b4031 | 0.59 | -0.3 |
4,239,678 | + | xylE | b4031 | 0.59 | -1.5 |
4,239,686 | + | xylE | b4031 | 0.60 | -0.3 |
4,239,686 | + | xylE | b4031 | 0.60 | +0.5 |
4,239,686 | + | xylE | b4031 | 0.60 | +0.3 |
4,239,686 | + | xylE | b4031 | 0.60 | -0.2 |
4,239,688 | + | xylE | b4031 | 0.60 | -0.1 |
4,239,713 | - | xylE | b4031 | 0.62 | +0.2 |
4,239,781 | + | xylE | b4031 | 0.66 | +0.9 |
4,239,800 | + | xylE | b4031 | 0.68 | -0.3 |
4,239,801 | + | xylE | b4031 | 0.68 | -0.8 |
4,239,801 | + | xylE | b4031 | 0.68 | -0.8 |
4,239,801 | + | xylE | b4031 | 0.68 | +0.5 |
4,239,801 | + | xylE | b4031 | 0.68 | +2.6 |
4,239,809 | - | xylE | b4031 | 0.68 | -0.6 |
4,239,810 | - | xylE | b4031 | 0.68 | -0.2 |
4,239,813 | + | xylE | b4031 | 0.68 | -0.2 |
4,239,813 | + | xylE | b4031 | 0.68 | -0.3 |
4,239,821 | - | xylE | b4031 | 0.69 | -1.3 |
4,239,823 | + | xylE | b4031 | 0.69 | -1.8 |
4,239,823 | + | xylE | b4031 | 0.69 | +0.1 |
4,239,823 | + | xylE | b4031 | 0.69 | -0.7 |
4,239,823 | + | xylE | b4031 | 0.69 | +0.2 |
4,239,826 | + | xylE | b4031 | 0.69 | -0.8 |
4,239,826 | + | xylE | b4031 | 0.69 | -0.3 |
4,239,826 | + | xylE | b4031 | 0.69 | +0.6 |
4,239,832 | - | xylE | b4031 | 0.70 | -1.1 |
4,239,834 | - | xylE | b4031 | 0.70 | -0.9 |
4,239,835 | + | xylE | b4031 | 0.70 | -1.4 |
4,239,838 | - | xylE | b4031 | 0.70 | -1.1 |
4,239,849 | + | xylE | b4031 | 0.71 | -0.4 |
4,239,854 | + | xylE | b4031 | 0.71 | -0.3 |
4,239,855 | + | xylE | b4031 | 0.71 | -0.0 |
4,239,855 | + | xylE | b4031 | 0.71 | +0.2 |
4,239,855 | + | -0.2 | |||
4,239,855 | + | xylE | b4031 | 0.71 | +0.0 |
4,239,855 | + | xylE | b4031 | 0.71 | -0.5 |
4,239,863 | - | xylE | b4031 | 0.72 | +0.6 |
4,239,863 | - | xylE | b4031 | 0.72 | -2.0 |
4,239,875 | - | xylE | b4031 | 0.73 | -0.0 |
4,239,907 | + | xylE | b4031 | 0.75 | +0.3 |
4,239,907 | - | xylE | b4031 | 0.75 | +0.2 |
4,239,907 | - | xylE | b4031 | 0.75 | +0.1 |
4,239,921 | - | xylE | b4031 | 0.76 | -0.1 |
4,239,921 | - | xylE | b4031 | 0.76 | +0.4 |
4,239,922 | - | xylE | b4031 | 0.76 | -1.1 |
4,239,922 | - | xylE | b4031 | 0.76 | -1.0 |
4,239,922 | - | xylE | b4031 | 0.76 | +1.3 |
4,239,922 | - | xylE | b4031 | 0.76 | +0.3 |
4,239,923 | + | xylE | b4031 | 0.76 | -0.3 |
4,239,930 | - | xylE | b4031 | 0.76 | -0.8 |
4,239,931 | - | xylE | b4031 | 0.76 | -0.1 |
4,239,933 | + | xylE | b4031 | 0.77 | -0.7 |
4,239,933 | - | xylE | b4031 | 0.77 | -0.3 |
4,239,936 | - | xylE | b4031 | 0.77 | +0.2 |
4,239,936 | - | xylE | b4031 | 0.77 | +2.4 |
4,239,936 | - | xylE | b4031 | 0.77 | +0.4 |
4,239,955 | - | xylE | b4031 | 0.78 | -0.9 |
4,239,969 | + | xylE | b4031 | 0.79 | +0.4 |
4,239,969 | + | xylE | b4031 | 0.79 | -1.5 |
4,239,969 | + | xylE | b4031 | 0.79 | +0.0 |
4,239,969 | + | xylE | b4031 | 0.79 | +0.6 |
4,239,969 | + | xylE | b4031 | 0.79 | -0.3 |
4,239,974 | + | xylE | b4031 | 0.79 | -1.3 |
4,239,982 | - | xylE | b4031 | 0.80 | +0.1 |
4,240,014 | - | xylE | b4031 | 0.82 | +0.5 |
4,240,019 | + | xylE | b4031 | 0.82 | -0.7 |
4,240,032 | - | xylE | b4031 | 0.83 | -0.6 |
4,240,042 | + | xylE | b4031 | 0.84 | -0.4 |
4,240,042 | + | xylE | b4031 | 0.84 | +0.1 |
4,240,044 | + | xylE | b4031 | 0.84 | -0.8 |
4,240,052 | - | xylE | b4031 | 0.85 | +0.4 |
4,240,052 | - | xylE | b4031 | 0.85 | +0.3 |
4,240,059 | - | xylE | b4031 | 0.85 | -0.3 |
4,240,063 | + | xylE | b4031 | 0.85 | -2.7 |
4,240,071 | - | xylE | b4031 | 0.86 | -1.3 |
4,240,074 | - | xylE | b4031 | 0.86 | +0.3 |
4,240,082 | + | xylE | b4031 | 0.87 | -0.4 |
4,240,151 | + | -0.8 | |||
4,240,151 | + | -0.2 | |||
4,240,158 | + | -0.9 | |||
4,240,159 | + | +0.9 | |||
4,240,159 | + | +0.2 | |||
4,240,170 | + | +0.1 | |||
4,240,172 | + | -1.2 | |||
4,240,177 | - | -1.2 | |||
4,240,197 | + | +0.1 | |||
4,240,197 | + | -0.3 | |||
4,240,258 | + | -2.4 | |||
4,240,271 | + | +0.1 | |||
4,240,275 | + | -0.7 | |||
4,240,275 | + | +0.5 | |||
4,240,275 | + | +0.8 | |||
4,240,286 | + | -2.0 | |||
4,240,286 | + | -1.3 | |||
4,240,294 | - | +2.0 | |||
4,240,294 | - | +1.6 | |||
4,240,294 | - | +2.8 | |||
4,240,294 | - | +1.3 | |||
4,240,305 | + | -0.1 | |||
4,240,305 | + | +0.1 | |||
4,240,320 | + | +0.6 | |||
4,240,444 | + | +0.1 | |||
4,240,444 | + | +1.2 | |||
4,240,575 | - | +1.2 | |||
4,240,581 | + | -0.1 | |||
4,240,585 | - | +0.3 | |||
4,240,587 | - | -0.1 | |||
4,240,599 | - | -0.5 | |||
4,240,609 | + | +0.2 | |||
4,240,617 | - | -1.2 | |||
4,240,617 | - | +0.6 | |||
4,240,617 | - | +0.3 | |||
4,240,623 | - | +0.2 | |||
4,240,631 | - | +0.3 | |||
4,240,631 | - | -1.5 | |||
4,240,641 | - | +0.4 | |||
4,240,703 | + | +0.1 | |||
4,240,711 | - | -0.4 | |||
4,240,721 | - | -0.1 | |||
4,240,721 | - | -0.5 | |||
4,240,729 | - | +0.9 | |||
4,240,807 | + | malG | b4032 | 0.18 | +0.0 |
4,240,807 | + | malG | b4032 | 0.18 | +0.3 |
4,240,809 | + | malG | b4032 | 0.18 | -0.7 |
4,240,817 | - | malG | b4032 | 0.19 | +3.6 |
4,240,817 | - | malG | b4032 | 0.19 | +3.1 |
4,240,924 | - | +1.8 | |||
4,240,971 | - | malG | b4032 | 0.36 | +0.9 |
4,240,971 | - | malG | b4032 | 0.36 | +0.9 |
4,241,068 | - | malG | b4032 | 0.47 | +0.2 |
4,241,095 | + | malG | b4032 | 0.50 | +0.0 |
4,241,103 | - | malG | b4032 | 0.51 | +1.1 |
4,241,103 | - | malG | b4032 | 0.51 | -0.0 |
4,241,150 | - | malG | b4032 | 0.56 | +1.0 |
4,241,227 | - | malG | b4032 | 0.65 | +0.1 |
4,241,227 | - | malG | b4032 | 0.65 | +0.1 |
Or see this region's nucleotide sequence