Strain Fitness in Escherichia coli BW25113 around b3673

Experiment: D-Ribose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Ribose (C)
3,850,965	-	ivbL	b3672	0.53	-3.0
3,850,976	+	ivbL	b3672	0.64	-2.4
3,850,976	+	ivbL	b3672	0.64	-1.2
3,850,996	+	ivbL	b3672	0.84	+0.3
3,850,996	+	ivbL	b3672	0.84	-0.7
3,851,001	+	ivbL	b3672	0.89	-3.0
3,851,001	+	ivbL	b3672	0.89	-2.4
3,851,010	+				-2.2
3,851,010	+				-2.1
3,851,369	+				-0.5
3,851,369	+				+0.3
3,851,379	-				+0.4
3,851,379	-				+0.8
3,851,446	-				-0.6
3,851,446	-				-1.2
3,851,464	-				-0.3
3,851,469	-				+0.5
3,851,469	-				-0.6
3,851,469	-				-0.6
3,851,491	+				+0.2
3,851,493	+				+0.5
3,851,499	-				+0.4
3,851,514	-				+0.1
3,851,545	+				-0.6
3,851,545	+				-0.7
3,851,553	+				+0.3
3,851,592	+	tisB	b4618	0.18	+0.0
3,851,605	+	tisB	b4618	0.32	-0.7
3,851,627	-	tisB	b4618	0.57	+1.0
3,851,644	-	tisB	b4618	0.76	-0.0
3,851,709	+				+1.4
3,851,733	+				+0.8
3,851,733	+				+0.5
3,851,772	-				+0.4
3,851,849	-				-0.2
3,851,851	-				+0.8
3,851,977	-				+0.5
3,851,978	+				+0.2
3,851,978	+				-0.5
3,851,986	-				-2.0
3,851,990	+				-0.5
3,851,990	+				+1.1
3,851,997	-				-0.3
3,852,000	-				-0.6
3,852,056	-				+0.4
3,852,091	+	emrD	b3673	0.12	+0.0
3,852,204	+	emrD	b3673	0.22	-0.2
3,852,244	-	emrD	b3673	0.25	-0.4
3,852,265	+	emrD	b3673	0.27	+0.2
3,852,285	+	emrD	b3673	0.29	-0.1
3,852,285	+	emrD	b3673	0.29	-0.3
3,852,287	+	emrD	b3673	0.29	+0.2
3,852,287	+	emrD	b3673	0.29	-1.0
3,852,337	-	emrD	b3673	0.33	+0.5
3,852,341	+	emrD	b3673	0.33	+0.6
3,852,350	-	emrD	b3673	0.34	-0.2
3,852,350	-	emrD	b3673	0.34	+0.3
3,852,406	+	emrD	b3673	0.39	+0.1
3,852,414	+	emrD	b3673	0.40	+0.5
3,852,414	-	emrD	b3673	0.40	-0.0
3,852,535	-	emrD	b3673	0.50	-0.4
3,852,600	-	emrD	b3673	0.55	+0.0
3,852,609	+	emrD	b3673	0.56	-0.2
3,852,609	+	emrD	b3673	0.56	+0.1
3,852,630	+	emrD	b3673	0.58	-0.1
3,852,643	+	emrD	b3673	0.59	-0.2
3,852,646	-	emrD	b3673	0.59	-0.1
3,852,653	+	emrD	b3673	0.60	-0.8
3,852,653	+	emrD	b3673	0.60	-0.5
3,852,661	-	emrD	b3673	0.60	-0.1
3,852,661	-	emrD	b3673	0.60	+0.6
3,852,662	-	emrD	b3673	0.61	+1.0
3,852,662	-	emrD	b3673	0.61	-0.1
3,852,662	-	emrD	b3673	0.61	-1.2
3,852,662	-	emrD	b3673	0.61	-0.1
3,852,662	-	emrD	b3673	0.61	+0.2
3,852,662	-	emrD	b3673	0.61	-0.3
3,852,662	-	emrD	b3673	0.61	-1.5
3,852,662	-	emrD	b3673	0.61	+0.1
3,852,666	+	emrD	b3673	0.61	-0.3
3,852,666	+	emrD	b3673	0.61	+0.0
3,852,666	+	emrD	b3673	0.61	+0.5
3,852,666	+	emrD	b3673	0.61	-0.7
3,852,669	+	emrD	b3673	0.61	+2.3
3,852,675	-	emrD	b3673	0.62	-0.6
3,852,743	+	emrD	b3673	0.67	-1.2
3,852,762	-	emrD	b3673	0.69	-1.8
3,852,762	-	emrD	b3673	0.69	+1.3
3,852,813	-	emrD	b3673	0.73	-0.0
3,852,839	+	emrD	b3673	0.75	+0.5
3,852,839	+	emrD	b3673	0.75	-0.4
3,852,900	-	emrD	b3673	0.81	-0.2
3,852,900	-	emrD	b3673	0.81	+0.6
3,852,966	-	emrD	b3673	0.86	+1.0
3,852,976	-	emrD	b3673	0.87	+0.7
3,852,981	+	emrD	b3673	0.87	+0.3
3,853,003	-	emrD	b3673	0.89	+0.0
3,853,023	-				-0.3
3,853,025	+				+0.1
3,853,035	+				+0.9
3,853,035	+				+0.7
3,853,042	-				+0.6
3,853,043	-				-1.1
3,853,043	-				+0.7
3,853,078	+				+1.9
3,853,078	+				-2.2
3,853,078	+				+0.5
3,853,086	-				-0.3
3,853,114	+				-0.1
3,853,133	+				-0.3
3,853,147	+				-0.1
3,853,147	+				+0.9
3,853,158	-				-0.4
3,853,160	+				-0.4
3,853,160	-				+0.2
3,853,160	-				+0.4
3,853,168	-				+1.1
3,853,178	+				-0.9
3,853,178	+				-1.1
3,853,216	-	yidF	b3674	0.16	-0.7
3,853,216	-	yidF	b3674	0.16	+0.4
3,853,233	+	yidF	b3674	0.19	-0.5
3,853,238	+	yidF	b3674	0.20	+0.2
3,853,257	+	yidF	b3674	0.24	-0.9
3,853,257	+	yidF	b3674	0.24	-1.4
3,853,263	-	yidF	b3674	0.25	-0.7
3,853,265	-	yidF	b3674	0.26	+1.2
3,853,284	-	yidF	b3674	0.30	+0.8
3,853,295	-	yidF	b3674	0.32	-0.2
3,853,295	-	yidF	b3674	0.32	+0.6
3,853,378	+	yidF	b3674	0.48	+0.1
3,853,390	-	yidF	b3674	0.51	+0.7
3,853,390	-	yidF	b3674	0.51	-0.3
3,853,393	+	yidF	b3674	0.51	+0.2
3,853,399	+	yidF	b3674	0.53	+0.7
3,853,399	+	yidF	b3674	0.53	+1.4
3,853,407	-	yidF	b3674	0.54	+0.2
3,853,418	-	yidF	b3674	0.56	+0.9
3,853,419	-	yidF	b3674	0.57	+0.2
3,853,419	-	yidF	b3674	0.57	-0.2
3,853,419	-	yidF	b3674	0.57	-0.6
3,853,419	-	yidF	b3674	0.57	+0.1
3,853,445	+	yidF	b3674	0.62	+0.2
3,853,445	+	yidF	b3674	0.62	-1.3
3,853,445	+	yidF	b3674	0.62	+0.4
3,853,450	+	yidF	b3674	0.63	+0.1
3,853,453	-	yidF	b3674	0.63	-0.2
3,853,453	-	yidF	b3674	0.63	+1.0
3,853,453	-	yidF	b3674	0.63	+0.3
3,853,501	+	yidF	b3674	0.73	-0.1
3,853,501	+	yidF	b3674	0.73	-0.2
3,853,506	+	yidF	b3674	0.74	+0.6
3,853,511	+	yidF	b3674	0.75	+0.3
3,853,511	+	yidF	b3674	0.75	+0.4
3,853,511	+	yidF	b3674	0.75	+0.5
3,853,597	-				-0.1
3,853,597	-				-0.3
3,853,612	+				-0.5
3,853,612	+				+1.2
3,853,666	+				-1.3
3,853,687	+	yidG	b3675	0.15	-1.1
3,853,695	+	yidG	b3675	0.18	-2.1
3,853,697	+	yidG	b3675	0.18	-2.4
3,853,703	-	yidG	b3675	0.20	+0.3
3,853,727	+	yidG	b3675	0.26	-1.1
3,853,727	+	yidG	b3675	0.26	-3.2
3,853,781	-	yidG	b3675	0.41	-2.0
3,853,781	-	yidG	b3675	0.41	-0.6
3,853,796	-	yidG	b3675	0.45	-0.5
3,853,796	-	yidG	b3675	0.45	-0.7
3,853,819	-	yidG	b3675	0.52	+0.9
3,853,869	-	yidG	b3675	0.66	-1.6
3,853,904	+	yidG	b3675	0.75	-1.5
3,853,904	+	yidG	b3675	0.75	-1.3
3,853,914	+	yidG	b3675	0.78	-1.9
3,853,919	+	yidG	b3675	0.79	-1.5
3,853,933	-	yidG	b3675	0.83	-0.1
3,853,933	-	yidG	b3675	0.83	-2.0
3,853,959	-				-0.1
3,853,959	-				-2.8
3,853,993	+				+0.0
3,854,005	-				+0.3
3,854,011	-				-1.5
3,854,011	-				-3.0
3,854,053	-	yidH	b3676	0.20	-0.8
3,854,062	+	yidH	b3676	0.23	-1.1
3,854,062	+	yidH	b3676	0.23	-1.1
3,854,062	+	yidH	b3676	0.23	-2.1
3,854,080	+	yidH	b3676	0.28	-1.8
3,854,080	+	yidH	b3676	0.28	+0.6
3,854,129	-	yidH	b3676	0.42	-0.1