Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybgD and gltA are separated by 389 nucleotides gltA and sdhC are separated by 708 nucleotides
b0719: ybgD - predicted fimbrial-like adhesin protein (NCBI), at 751,452 to 752,018
ybgD
b0720: gltA - citrate synthase (NCBI), at 752,408 to 753,691
gltA
b0721: sdhC - succinate dehydrogenase cytochrome b556 large membrane subunit (NCBI), at 754,400 to 754,789
sdhC
Position (kb) 752
753
754 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 751.463 kb on - strand at 751.479 kb on - strand at 751.490 kb on - strand at 751.495 kb on - strand at 751.497 kb on - strand at 751.524 kb on - strand, within ybgD at 751.526 kb on - strand, within ybgD at 751.548 kb on - strand, within ybgD at 751.559 kb on - strand, within ybgD at 751.564 kb on - strand, within ybgD at 751.564 kb on - strand, within ybgD at 751.564 kb on - strand, within ybgD at 751.564 kb on - strand, within ybgD at 751.585 kb on - strand, within ybgD at 751.594 kb on + strand, within ybgD at 751.607 kb on - strand, within ybgD at 751.607 kb on - strand, within ybgD at 751.611 kb on - strand, within ybgD at 751.634 kb on + strand, within ybgD at 751.634 kb on + strand, within ybgD at 751.637 kb on - strand, within ybgD at 751.640 kb on - strand, within ybgD at 751.642 kb on - strand, within ybgD at 751.642 kb on - strand, within ybgD at 751.642 kb on - strand, within ybgD at 751.642 kb on - strand, within ybgD at 751.642 kb on - strand, within ybgD at 751.642 kb on - strand, within ybgD at 751.644 kb on + strand, within ybgD at 751.644 kb on + strand, within ybgD at 751.666 kb on - strand, within ybgD at 751.666 kb on - strand, within ybgD at 751.672 kb on - strand, within ybgD at 751.672 kb on - strand, within ybgD at 751.672 kb on - strand, within ybgD at 751.693 kb on - strand, within ybgD at 751.707 kb on - strand, within ybgD at 751.707 kb on - strand, within ybgD at 751.707 kb on - strand, within ybgD at 751.712 kb on + strand, within ybgD at 751.712 kb on + strand, within ybgD at 751.721 kb on - strand, within ybgD at 751.750 kb on - strand, within ybgD at 751.757 kb on + strand, within ybgD at 751.757 kb on + strand, within ybgD at 751.772 kb on + strand, within ybgD at 751.791 kb on + strand, within ybgD at 751.791 kb on + strand, within ybgD at 751.794 kb on + strand, within ybgD at 751.794 kb on + strand, within ybgD at 751.805 kb on + strand, within ybgD at 751.813 kb on + strand, within ybgD at 751.827 kb on + strand, within ybgD at 751.829 kb on + strand, within ybgD at 751.840 kb on + strand, within ybgD at 751.840 kb on + strand, within ybgD at 751.840 kb on + strand, within ybgD at 751.850 kb on + strand, within ybgD at 751.909 kb on + strand, within ybgD at 751.915 kb on + strand, within ybgD at 751.915 kb on + strand, within ybgD at 751.938 kb on + strand, within ybgD at 751.938 kb on + strand, within ybgD at 751.951 kb on + strand, within ybgD at 751.951 kb on + strand, within ybgD at 751.951 kb on + strand, within ybgD at 751.951 kb on + strand, within ybgD at 751.951 kb on + strand, within ybgD at 751.951 kb on + strand, within ybgD at 751.951 kb on + strand, within ybgD at 751.952 kb on + strand, within ybgD at 751.959 kb on - strand, within ybgD at 751.959 kb on - strand, within ybgD at 751.959 kb on - strand, within ybgD at 751.959 kb on - strand, within ybgD at 751.966 kb on + strand at 751.966 kb on + strand at 751.966 kb on + strand at 751.966 kb on + strand at 751.968 kb on + strand at 751.968 kb on + strand at 751.968 kb on + strand at 751.976 kb on + strand at 751.976 kb on - strand at 751.978 kb on + strand at 751.978 kb on + strand at 751.978 kb on + strand at 751.978 kb on + strand at 751.978 kb on + strand at 751.978 kb on + strand at 751.978 kb on + strand at 751.981 kb on - strand at 751.981 kb on - strand at 751.983 kb on + strand at 752.008 kb on + strand at 752.013 kb on + strand at 752.013 kb on + strand at 752.013 kb on + strand at 752.013 kb on + strand at 752.034 kb on + strand at 752.034 kb on + strand at 752.034 kb on + strand at 752.035 kb on + strand at 752.036 kb on + strand at 752.041 kb on + strand at 752.041 kb on + strand at 752.041 kb on + strand at 752.192 kb on - strand at 752.350 kb on - strand at 752.415 kb on - strand at 752.419 kb on - strand at 752.432 kb on - strand at 752.451 kb on + strand at 752.454 kb on - strand at 752.459 kb on - strand at 752.480 kb on - strand at 752.480 kb on - strand at 752.492 kb on - strand at 752.497 kb on - strand at 752.522 kb on - strand at 752.522 kb on - strand at 752.526 kb on + strand at 752.526 kb on - strand at 752.531 kb on - strand at 752.531 kb on - strand at 752.962 kb on + strand, within gltA at 752.972 kb on + strand, within gltA at 752.983 kb on + strand, within gltA at 752.998 kb on + strand, within gltA at 752.998 kb on + strand, within gltA at 753.016 kb on + strand, within gltA at 753.025 kb on - strand, within gltA at 753.030 kb on - strand, within gltA at 753.076 kb on + strand, within gltA at 753.076 kb on + strand, within gltA at 753.076 kb on + strand, within gltA at 753.084 kb on - strand, within gltA at 753.084 kb on - strand, within gltA at 753.093 kb on + strand, within gltA at 753.093 kb on + strand, within gltA at 753.116 kb on - strand, within gltA at 753.276 kb on + strand, within gltA at 753.370 kb on + strand, within gltA at 753.449 kb on - strand, within gltA at 753.567 kb on - strand at 753.621 kb on + strand at 753.621 kb on + strand at 753.688 kb on - strand at 753.813 kb on + strand at 753.846 kb on + strand at 753.944 kb on + strand at 754.017 kb on - strand at 754.126 kb on + strand at 754.174 kb on + strand at 754.209 kb on + strand at 754.305 kb on + strand at 754.305 kb on + strand at 754.385 kb on + strand at 754.477 kb on - strand, within sdhC at 754.507 kb on - strand, within sdhC at 754.512 kb on + strand, within sdhC at 754.550 kb on + strand, within sdhC at 754.636 kb on - strand, within sdhC at 754.663 kb on - strand, within sdhC
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 751,463 - -0.0 751,479 - +0.1 751,490 - +0.3 751,495 - -0.7 751,497 - +0.2 751,524 - ybgD b0719 0.13 -0.3 751,526 - ybgD b0719 0.13 -1.1 751,548 - ybgD b0719 0.17 +3.2 751,559 - ybgD b0719 0.19 -0.5 751,564 - ybgD b0719 0.20 +0.4 751,564 - ybgD b0719 0.20 +1.0 751,564 - ybgD b0719 0.20 +1.6 751,564 - ybgD b0719 0.20 -0.2 751,585 - ybgD b0719 0.23 -0.2 751,594 + ybgD b0719 0.25 +0.1 751,607 - ybgD b0719 0.27 +0.2 751,607 - ybgD b0719 0.27 -0.1 751,611 - ybgD b0719 0.28 +0.2 751,634 + ybgD b0719 0.32 +0.6 751,634 + ybgD b0719 0.32 -0.8 751,637 - ybgD b0719 0.33 +0.4 751,640 - ybgD b0719 0.33 +0.3 751,642 - ybgD b0719 0.34 -1.4 751,642 - ybgD b0719 0.34 +1.1 751,642 - ybgD b0719 0.34 +0.2 751,642 - ybgD b0719 0.34 -0.2 751,642 - ybgD b0719 0.34 +0.6 751,642 - ybgD b0719 0.34 +1.4 751,644 + ybgD b0719 0.34 -0.5 751,644 + ybgD b0719 0.34 +0.1 751,666 - ybgD b0719 0.38 +0.1 751,666 - ybgD b0719 0.38 -0.7 751,672 - ybgD b0719 0.39 +1.3 751,672 - ybgD b0719 0.39 +0.3 751,672 - ybgD b0719 0.39 +0.7 751,693 - ybgD b0719 0.43 +0.1 751,707 - ybgD b0719 0.45 +0.4 751,707 - ybgD b0719 0.45 +0.7 751,707 - ybgD b0719 0.45 +0.4 751,712 + ybgD b0719 0.46 +0.2 751,712 + ybgD b0719 0.46 -0.8 751,721 - ybgD b0719 0.47 -0.3 751,750 - ybgD b0719 0.53 +0.4 751,757 + ybgD b0719 0.54 +0.4 751,757 + ybgD b0719 0.54 -0.4 751,772 + ybgD b0719 0.56 +0.8 751,791 + ybgD b0719 0.60 -0.8 751,791 + ybgD b0719 0.60 -0.1 751,794 + ybgD b0719 0.60 +0.1 751,794 + ybgD b0719 0.60 -0.9 751,805 + ybgD b0719 0.62 -1.3 751,813 + ybgD b0719 0.64 -0.5 751,827 + ybgD b0719 0.66 +0.2 751,829 + ybgD b0719 0.66 +0.2 751,840 + ybgD b0719 0.68 +0.6 751,840 + ybgD b0719 0.68 +0.5 751,840 + ybgD b0719 0.68 -1.8 751,850 + ybgD b0719 0.70 +0.6 751,909 + ybgD b0719 0.81 +0.9 751,915 + ybgD b0719 0.82 -0.4 751,915 + ybgD b0719 0.82 -0.3 751,938 + ybgD b0719 0.86 +0.5 751,938 + ybgD b0719 0.86 +0.6 751,951 + ybgD b0719 0.88 +0.7 751,951 + ybgD b0719 0.88 -0.3 751,951 + ybgD b0719 0.88 +0.5 751,951 + ybgD b0719 0.88 +1.0 751,951 + ybgD b0719 0.88 +0.3 751,951 + ybgD b0719 0.88 -0.5 751,951 + ybgD b0719 0.88 +0.6 751,952 + ybgD b0719 0.88 -0.4 751,959 - ybgD b0719 0.89 +0.9 751,959 - ybgD b0719 0.89 -1.0 751,959 - ybgD b0719 0.89 -0.4 751,959 - ybgD b0719 0.89 -0.0 751,966 + +1.2 751,966 + +0.1 751,966 + -0.0 751,966 + +0.3 751,968 + +0.6 751,968 + +0.8 751,968 + +0.3 751,976 + +0.7 751,976 - +0.3 751,978 + -0.8 751,978 + -0.2 751,978 + +0.4 751,978 + -1.2 751,978 + +0.6 751,978 + +2.2 751,978 + +1.6 751,981 - -0.2 751,981 - -0.7 751,983 + -0.1 752,008 + +0.2 752,013 + +0.5 752,013 + -0.5 752,013 + +0.1 752,013 + +0.2 752,034 + -0.4 752,034 + +0.9 752,034 + +0.6 752,035 + +0.5 752,036 + +0.2 752,041 + -0.2 752,041 + -0.4 752,041 + +0.6 752,192 - -0.6 752,350 - -0.1 752,415 - +0.8 752,419 - -2.2 752,432 - +0.1 752,451 + -2.9 752,454 - -3.5 752,459 - -1.2 752,480 - -2.6 752,480 - -1.7 752,492 - -2.3 752,497 - -0.0 752,522 - -2.0 752,522 - -2.0 752,526 + -0.8 752,526 - -2.8 752,531 - -1.1 752,531 - -1.9 752,962 + gltA b0720 0.43 -2.7 752,972 + gltA b0720 0.44 -2.2 752,983 + gltA b0720 0.45 -3.6 752,998 + gltA b0720 0.46 -1.9 752,998 + gltA b0720 0.46 -0.0 753,016 + gltA b0720 0.47 -3.1 753,025 - gltA b0720 0.48 -2.5 753,030 - gltA b0720 0.48 -1.2 753,076 + gltA b0720 0.52 -1.2 753,076 + gltA b0720 0.52 -1.4 753,076 + gltA b0720 0.52 -2.7 753,084 - gltA b0720 0.53 -2.5 753,084 - gltA b0720 0.53 -1.9 753,093 + gltA b0720 0.53 -1.2 753,093 + gltA b0720 0.53 -1.2 753,116 - gltA b0720 0.55 -3.3 753,276 + gltA b0720 0.68 -3.9 753,370 + gltA b0720 0.75 -1.5 753,449 - gltA b0720 0.81 -1.8 753,567 - -2.7 753,621 + -2.6 753,621 + -2.8 753,688 - -1.2 753,813 + -2.6 753,846 + -2.9 753,944 + +0.9 754,017 - -0.3 754,126 + -0.7 754,174 + -0.4 754,209 + -1.5 754,305 + -0.2 754,305 + -1.4 754,385 + -2.2 754,477 - sdhC b0721 0.20 -3.0 754,507 - sdhC b0721 0.27 -2.3 754,512 + sdhC b0721 0.29 -2.1 754,550 + sdhC b0721 0.38 -2.0 754,636 - sdhC b0721 0.61 -2.4 754,663 - sdhC b0721 0.67 -2.4
Or see this region's nucleotide sequence